RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 MRPL58Q14197 206 aaKnown RBP24.58■■□□□ 1.53
CCDC28B-203ENST00000461819 CCDC183Q5T5S1 534 aa24.58■■□□□ 1.53
CCDC28B-203ENST00000461819 TDRD10Q5VZ19 366 aaKnown RBP24.58■■□□□ 1.53
CCDC28B-203ENST00000461819 FOXR2Q6PJQ5 311 aa24.58■■□□□ 1.53
CCDC28B-203ENST00000461819 CEP63Q96MT8 703 aa24.58■■□□□ 1.53
CCDC28B-203ENST00000461819 DUSP9Q99956 384 aaKnown RBP24.58■■□□□ 1.53
CCDC28B-203ENST00000461819 MMRN2Q9H8L6 949 aa24.58■■□□□ 1.53
CCDC28B-203ENST00000461819 DACH1Q9UI36 760 aa24.58■■□□□ 1.53
CCDC28B-203ENST00000461819 FBXL5Q9UKA1 691 aa24.58■■□□□ 1.53
CCDC28B-203ENST00000461819 SNX9Q9Y5X1 595 aa24.58■■□□□ 1.53
CCDC28B-203ENST00000461819 HUS1O60921 280 aa24.57■■□□□ 1.52
CCDC28B-203ENST00000461819 SPATA31D3P0C874 917 aa24.57■■□□□ 1.52
CCDC28B-203ENST00000461819 NLRP12P59046 1061 aa24.57■■□□□ 1.52
CCDC28B-203ENST00000461819 DPCR1Q3MIW9 517 aa24.57■■□□□ 1.52
CCDC28B-203ENST00000461819 RSPO2Q6UXX9 243 aaPredicted RBP24.57■■□□□ 1.52
CCDC28B-203ENST00000461819 SPATA31D4Q6ZUB0 917 aa24.57■■□□□ 1.52
CCDC28B-203ENST00000461819 BORCS6Q96GS4 357 aa24.57■■□□□ 1.52
CCDC28B-203ENST00000461819 MSLNLQ96KJ4 702 aa24.57■■□□□ 1.52
CCDC28B-203ENST00000461819 RWDD2AQ9UIY3 292 aa24.57■■□□□ 1.52
CCDC28B-203ENST00000461819 OAZ2O95190 189 aa24.56■■□□□ 1.52
CCDC28B-203ENST00000461819 CST3P01034 146 aaPredicted RBP24.56■■□□□ 1.52
CCDC28B-203ENST00000461819 C4BPAP04003 597 aaKnown RBP24.56■■□□□ 1.52
CCDC28B-203ENST00000461819 CYP11A1P05108 521 aa24.56■■□□□ 1.52
CCDC28B-203ENST00000461819 CPB1P15086 417 aa24.56■■□□□ 1.52
CCDC28B-203ENST00000461819 HOXB8P17481 243 aaPredicted RBP24.56■■□□□ 1.52
CCDC28B-203ENST00000461819 KCNQ1P51787 676 aa24.56■■□□□ 1.52
CCDC28B-203ENST00000461819 RAB33AQ14088 237 aa24.56■■□□□ 1.52
CCDC28B-203ENST00000461819 CCDC40Q4G0X9 1142 aa24.56■■□□□ 1.52
CCDC28B-203ENST00000461819 DCAF17Q5H9S7 520 aaPredicted RBP24.56■■□□□ 1.52
CCDC28B-203ENST00000461819 C1orf220Q5T0J3 134 aa24.56■■□□□ 1.52
CCDC28B-203ENST00000461819 TCERG1LQ5VWI1 586 aa24.56■■□□□ 1.52
CCDC28B-203ENST00000461819 WSCD1Q658N2 575 aa24.56■■□□□ 1.52
CCDC28B-203ENST00000461819 SLC8B1Q6J4K2 584 aa24.56■■□□□ 1.52
CCDC28B-203ENST00000461819 ASB2Q96Q27 587 aa24.56■■□□□ 1.52
CCDC28B-203ENST00000461819 APOL5Q9BWW9 433 aa24.56■■□□□ 1.52
CCDC28B-203ENST00000461819 OXCT2Q9BYC2 517 aaPredicted RBP24.56■■□□□ 1.52
CCDC28B-203ENST00000461819 GDAP2Q9NXN4 497 aa24.56■■□□□ 1.52
CCDC28B-203ENST00000461819 ARMCX3Q9UH62 379 aaPredicted RBP24.56■■□□□ 1.52
CCDC28B-203ENST00000461819 STX10O60499 249 aa24.55■■□□□ 1.52
CCDC28B-203ENST00000461819 C1RP00736 705 aa24.55■■□□□ 1.52
CCDC28B-203ENST00000461819 PTMSP20962 102 aa24.55■■□□□ 1.52
CCDC28B-203ENST00000461819 PIK3CAP42336 1068 aa24.55■■□□□ 1.52
CCDC28B-203ENST00000461819 GCLMP48507 274 aa24.55■■□□□ 1.52
CCDC28B-203ENST00000461819 MYL6P60660 151 aa24.55■■□□□ 1.52
CCDC28B-203ENST00000461819 ROR1Q01973 937 aa24.55■■□□□ 1.52
CCDC28B-203ENST00000461819 NCOA4Q13772 614 aa24.55■■□□□ 1.52
CCDC28B-203ENST00000461819 ZACNQ401N2 412 aa24.55■■□□□ 1.52
CCDC28B-203ENST00000461819 PTCRAQ6ISU1 281 aaPredicted RBP24.55■■□□□ 1.52
CCDC28B-203ENST00000461819 RBM43Q6ZSC3 357 aaKnown RBP24.55■■□□□ 1.52
CCDC28B-203ENST00000461819 SV2AQ7L0J3 742 aa24.55■■□□□ 1.52
CCDC28B-203ENST00000461819 SMRP1Q8NCR6 262 aa24.55■■□□□ 1.52
CCDC28B-203ENST00000461819 KREMEN2Q8NCW0 462 aa24.55■■□□□ 1.52
CCDC28B-203ENST00000461819 SYAP1Q96A49 352 aaPredicted RBP24.55■■□□□ 1.52
CCDC28B-203ENST00000461819 PLEKHA4Q9H4M7 779 aa24.55■■□□□ 1.52
CCDC28B-203ENST00000461819 SFXN1Q9H9B4 322 aa24.55■■□□□ 1.52
CCDC28B-203ENST00000461819 TCF20Q9UGU0 1960 aaKnown RBP24.54■■□□□ 1.52
CCDC28B-203ENST00000461819 OR6C75A6NL08 312 aa24.54■■□□□ 1.52
CCDC28B-203ENST00000461819 TBC1D4O60343 1298 aa24.54■■□□□ 1.52
CCDC28B-203ENST00000461819 ATICP31939 592 aa24.54■■□□□ 1.52
CCDC28B-203ENST00000461819 TNNC1P63316 161 aa24.54■■□□□ 1.52
CCDC28B-203ENST00000461819 SMAD4Q13485 552 aaKnown RBP24.54■■□□□ 1.52
CCDC28B-203ENST00000461819 ZNF699Q32M78 642 aa24.54■■□□□ 1.52
CCDC28B-203ENST00000461819 PUS10Q3MIT2 529 aaKnown RBP24.54■■□□□ 1.52
CCDC28B-203ENST00000461819 RARS2Q5T160 578 aaKnown RBP24.54■■□□□ 1.52
CCDC28B-203ENST00000461819 LIN9Q5TKA1 542 aa24.54■■□□□ 1.52
CCDC28B-203ENST00000461819 LILRA6Q6PI73 481 aa24.54■■□□□ 1.52
CCDC28B-203ENST00000461819 SYCE2Q6PIF2 218 aa24.54■■□□□ 1.52
CCDC28B-203ENST00000461819 FILIP1Q7Z7B0 1213 aa24.54■■□□□ 1.52
CCDC28B-203ENST00000461819 THEM5Q8N1Q8 247 aa24.54■■□□□ 1.52
CCDC28B-203ENST00000461819 TOP6BLQ8N6T0 577 aa24.54■■□□□ 1.52
CCDC28B-203ENST00000461819 C12orf76Q8N812 135 aaPredicted RBP24.54■■□□□ 1.52
CCDC28B-203ENST00000461819 GADD45GIP1Q8TAE8 222 aaPredicted RBP24.54■■□□□ 1.52
CCDC28B-203ENST00000461819 METTL14Q9HCE5 456 aaKnown RBP24.54■■□□□ 1.52
CCDC28B-203ENST00000461819 FBXW11Q9UKB1 542 aa24.54■■□□□ 1.52
CCDC28B-203ENST00000461819 L1RE1Q9UN81 338 aa24.54■■□□□ 1.52
CCDC28B-203ENST00000461819 FAM50BQ9Y247 325 aa24.54■■□□□ 1.52
CCDC28B-203ENST00000461819 C2orf16Q68DN1 1984 aa24.54■■□□□ 1.52
CCDC28B-203ENST00000461819 WDR27A2RRH5 827 aa24.53■■□□□ 1.52
CCDC28B-203ENST00000461819 FGFR1OPO95684 399 aaKnown RBP24.53■■□□□ 1.52
CCDC28B-203ENST00000461819 GTF2H1P32780 548 aa24.53■■□□□ 1.52
CCDC28B-203ENST00000461819 PPP3CAQ08209 521 aa24.53■■□□□ 1.52
CCDC28B-203ENST00000461819 SASS6Q6UVJ0 657 aa24.53■■□□□ 1.52
CCDC28B-203ENST00000461819 ADGRF2Q8IZF7 708 aa24.53■■□□□ 1.52
CCDC28B-203ENST00000461819 TMEM86AQ8N2M4 240 aa24.53■■□□□ 1.52
CCDC28B-203ENST00000461819 PDCL2Q8N4E4 241 aa24.53■■□□□ 1.52
CCDC28B-203ENST00000461819 HDAC7Q8WUI4 952 aa24.53■■□□□ 1.52
CCDC28B-203ENST00000461819 MMS19Q96T76 1030 aa24.53■■□□□ 1.52
CCDC28B-203ENST00000461819 SRRTQ9BXP5 876 aaKnown RBP24.53■■□□□ 1.52
CCDC28B-203ENST00000461819 TMEM8AQ9HCN3 771 aa24.53■■□□□ 1.52
CCDC28B-203ENST00000461819 VNN1O95497 513 aa24.52■■□□□ 1.52
CCDC28B-203ENST00000461819 STAU1O95793 577 aaKnown RBP24.52■■□□□ 1.52
CCDC28B-203ENST00000461819 MXI1P50539 228 aa24.52■■□□□ 1.52
CCDC28B-203ENST00000461819 TPD52L1Q16890 204 aaPredicted RBP24.52■■□□□ 1.52
CCDC28B-203ENST00000461819 WDR72Q3MJ13 1102 aa24.52■■□□□ 1.52
CCDC28B-203ENST00000461819 CES5AQ6NT32 575 aa24.52■■□□□ 1.52
CCDC28B-203ENST00000461819 CAVIN1Q6NZI2 390 aaKnown RBP24.52■■□□□ 1.52
CCDC28B-203ENST00000461819 TMC5Q6UXY8 1006 aa24.52■■□□□ 1.52
CCDC28B-203ENST00000461819 C15orf39Q6ZRI6 1047 aa24.52■■□□□ 1.52
CCDC28B-203ENST00000461819 FRMD5Q7Z6J6 570 aa24.52■■□□□ 1.52
CCDC28B-203ENST00000461819 ZNF461Q8TAF7 563 aa24.52■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms