RNA–Protein interactions for RNA: ENST00000453441.1

COL28A1-205, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 2

Gene COL28A1, Length 700 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-205ENST00000453441 TRIM49BA6NDI0 452 aa9.39□□□□□ -0.91
COL28A1-205ENST00000453441 J3QL48 77 aa9.39□□□□□ -0.91
COL28A1-205ENST00000453441 PIRO00625 290 aa9.39□□□□□ -0.91
COL28A1-205ENST00000453441 SYN3O14994 580 aa9.39□□□□□ -0.91
COL28A1-205ENST00000453441 B4GALT3O60512 393 aa9.39□□□□□ -0.91
COL28A1-205ENST00000453441 N4BP1O75113 896 aaKnown RBP9.39□□□□□ -0.91
COL28A1-205ENST00000453441 STAU1O95793 577 aaKnown RBP9.39□□□□□ -0.91
COL28A1-205ENST00000453441 EFEMP2O95967 443 aa9.39□□□□□ -0.91
COL28A1-205ENST00000453441 C1RP00736 705 aa9.39□□□□□ -0.91
COL28A1-205ENST00000453441 SOD2P04179 222 aa9.39□□□□□ -0.91
COL28A1-205ENST00000453441 ITGB1P05556 798 aa9.39□□□□□ -0.91
COL28A1-205ENST00000453441 DLATP10515 647 aaKnown RBP9.39□□□□□ -0.91
COL28A1-205ENST00000453441 CASP4P49662 377 aa9.39□□□□□ -0.91
COL28A1-205ENST00000453441 TAF6P49848 677 aa9.39□□□□□ -0.91
COL28A1-205ENST00000453441 SMCPP49901 116 aaPredicted RBP9.39□□□□□ -0.91
COL28A1-205ENST00000453441 CLCNKBP51801 687 aa9.39□□□□□ -0.91
COL28A1-205ENST00000453441 PMS1P54277 932 aaKnown RBP9.39□□□□□ -0.91
COL28A1-205ENST00000453441 TYRO3Q06418 890 aa9.39□□□□□ -0.91
COL28A1-205ENST00000453441 SOX4Q06945 474 aaPredicted RBP9.39□□□□□ -0.91
COL28A1-205ENST00000453441 MYO1EQ12965 1108 aa9.39□□□□□ -0.91
COL28A1-205ENST00000453441 SMC1AQ14683 1233 aaKnown RBP9.39□□□□□ -0.91
COL28A1-205ENST00000453441 USP41Q3LFD5 358 aa9.39□□□□□ -0.91
COL28A1-205ENST00000453441 SV2CQ496J9 727 aa9.39□□□□□ -0.91
COL28A1-205ENST00000453441 CCDC40Q4G0X9 1142 aa9.39□□□□□ -0.91
COL28A1-205ENST00000453441 C9orf57Q5W0N0 161 aa9.39□□□□□ -0.91
COL28A1-205ENST00000453441 FUT10Q6P4F1 479 aa9.39□□□□□ -0.91
COL28A1-205ENST00000453441 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.39□□□□□ -0.91
COL28A1-205ENST00000453441 EFCAB13Q8IY85 973 aa9.39□□□□□ -0.91
COL28A1-205ENST00000453441 RNF168Q8IYW5 571 aaPredicted RBP9.39□□□□□ -0.91
COL28A1-205ENST00000453441 DEFB123Q8N688 67 aa9.39□□□□□ -0.91
COL28A1-205ENST00000453441 ZSWIM2Q8NEG5 633 aa9.39□□□□□ -0.91
COL28A1-205ENST00000453441 FAM174AQ8TBP5 190 aa9.39□□□□□ -0.91
COL28A1-205ENST00000453441 SPATA18Q8TC71 538 aa9.39□□□□□ -0.91
COL28A1-205ENST00000453441 ENOX1Q8TC92 643 aaKnown RBP9.39□□□□□ -0.91
COL28A1-205ENST00000453441 SPPL3Q8TCT6 385 aa9.39□□□□□ -0.91
COL28A1-205ENST00000453441 TAF4BQ92750 862 aa9.39□□□□□ -0.91
COL28A1-205ENST00000453441 C18orf25Q96B23 403 aaPredicted RBP9.39□□□□□ -0.91
COL28A1-205ENST00000453441 MRPL38Q96DV4 380 aaKnown RBP9.39□□□□□ -0.91
COL28A1-205ENST00000453441 DUSP9Q99956 384 aaKnown RBP9.39□□□□□ -0.91
COL28A1-205ENST00000453441 BPIFA3Q9BQP9 254 aa9.39□□□□□ -0.91
COL28A1-205ENST00000453441 TLR9Q9NR96 1032 aa9.39□□□□□ -0.91
COL28A1-205ENST00000453441 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP9.39□□□□□ -0.91
COL28A1-205ENST00000453441 MARCH5Q9NX47 278 aa9.39□□□□□ -0.91
COL28A1-205ENST00000453441 TUBGCP4Q9UGJ1 667 aa9.39□□□□□ -0.91
COL28A1-205ENST00000453441 MTUS1Q9ULD2 1270 aa9.39□□□□□ -0.91
COL28A1-205ENST00000453441 PRG3Q9Y2Y8 225 aaPredicted RBP9.39□□□□□ -0.91
COL28A1-205ENST00000453441 NUB1Q9Y5A7 615 aa9.39□□□□□ -0.91
COL28A1-205ENST00000453441 IRAK3Q9Y616 596 aa9.39□□□□□ -0.91
COL28A1-205ENST00000453441 COL4A4P53420 1690 aaPredicted RBP9.39□□□□□ -0.91
COL28A1-205ENST00000453441 CHD9Q3L8U1 2897 aa9.38□□□□□ -0.91
COL28A1-205ENST00000453441 LRRIQ3A6PVS8 624 aaPredicted RBP9.38□□□□□ -0.91
COL28A1-205ENST00000453441 PMM2O15305 246 aa9.38□□□□□ -0.91
COL28A1-205ENST00000453441 NCK2O43639 380 aa9.38□□□□□ -0.91
COL28A1-205ENST00000453441 KIF4AO95239 1232 aa9.38□□□□□ -0.91
COL28A1-205ENST00000453441 URODP06132 367 aa9.38□□□□□ -0.91
COL28A1-205ENST00000453441 FAM163BP0C2L3 166 aa9.38□□□□□ -0.91
COL28A1-205ENST00000453441 CTSAP10619 480 aa9.38□□□□□ -0.91
COL28A1-205ENST00000453441 ATICP31939 592 aa9.38□□□□□ -0.91
COL28A1-205ENST00000453441 GLUD2P49448 558 aa9.38□□□□□ -0.91
COL28A1-205ENST00000453441 AARSP49588 968 aaKnown RBP eCLIP9.38□□□□□ -0.91
COL28A1-205ENST00000453441 SPAG1Q07617 926 aa9.38□□□□□ -0.91
COL28A1-205ENST00000453441 CETN1Q12798 172 aa9.38□□□□□ -0.91
COL28A1-205ENST00000453441 TRPC3Q13507 836 aa9.38□□□□□ -0.91
COL28A1-205ENST00000453441 GRIN2CQ14957 1233 aa9.38□□□□□ -0.91
COL28A1-205ENST00000453441 ZACNQ401N2 412 aa9.38□□□□□ -0.91
COL28A1-205ENST00000453441 TRAPPC11Q7Z392 1133 aa9.38□□□□□ -0.91
COL28A1-205ENST00000453441 C1orf127Q8N9H9 656 aa9.38□□□□□ -0.91
COL28A1-205ENST00000453441 CCDC150Q8NCX0 1101 aa9.38□□□□□ -0.91
COL28A1-205ENST00000453441 APPL2Q8NEU8 664 aa9.38□□□□□ -0.91
COL28A1-205ENST00000453441 POF1BQ8WVV4 589 aa9.38□□□□□ -0.91
COL28A1-205ENST00000453441 BORCS6Q96GS4 357 aa9.38□□□□□ -0.91
COL28A1-205ENST00000453441 FAXDC2Q96IV6 333 aa9.38□□□□□ -0.91
COL28A1-205ENST00000453441 SUSD3Q96L08 255 aa9.38□□□□□ -0.91
COL28A1-205ENST00000453441 CDCA3Q99618 268 aaPredicted RBP9.38□□□□□ -0.91
COL28A1-205ENST00000453441 SRRTQ9BXP5 876 aaKnown RBP9.38□□□□□ -0.91
COL28A1-205ENST00000453441 IMPG2Q9BZV3 1241 aa9.38□□□□□ -0.91
COL28A1-205ENST00000453441 MTMR12Q9C0I1 747 aa9.38□□□□□ -0.91
COL28A1-205ENST00000453441 CXCL16Q9H2A7 254 aa9.38□□□□□ -0.91
COL28A1-205ENST00000453441 PRDM12Q9H4Q4 367 aa9.38□□□□□ -0.91
COL28A1-205ENST00000453441 TMEM8AQ9HCN3 771 aa9.38□□□□□ -0.91
COL28A1-205ENST00000453441 MAGEC2Q9UBF1 373 aaPredicted RBP9.38□□□□□ -0.91
COL28A1-205ENST00000453441 DSEQ9UL01 958 aa9.38□□□□□ -0.91
COL28A1-205ENST00000453441 PLXNA4Q9HCM2 1894 aa9.38□□□□□ -0.91
COL28A1-205ENST00000453441 SMTNL1A8MU46 457 aa9.37□□□□□ -0.91
COL28A1-205ENST00000453441 NT5C1B-RDH14C9J2C7 533 aa9.37□□□□□ -0.91
COL28A1-205ENST00000453441 H7C4K7 107 aa9.37□□□□□ -0.91
COL28A1-205ENST00000453441 M0QZQ0 153 aa9.37□□□□□ -0.91
COL28A1-205ENST00000453441 FSCN2O14926 492 aa9.37□□□□□ -0.91
COL28A1-205ENST00000453441 GRM6O15303 877 aa9.37□□□□□ -0.91
COL28A1-205ENST00000453441 P4HA2O15460 535 aa9.37□□□□□ -0.91
COL28A1-205ENST00000453441 PHACTR2O75167 634 aa9.37□□□□□ -0.91
COL28A1-205ENST00000453441 ITGB3P05106 788 aa9.37□□□□□ -0.91
COL28A1-205ENST00000453441 ODC1P11926 461 aa9.37□□□□□ -0.91
COL28A1-205ENST00000453441 TYMPP19971 482 aa9.37□□□□□ -0.91
COL28A1-205ENST00000453441 FGFR3P22607 806 aa9.37□□□□□ -0.91
COL28A1-205ENST00000453441 EEF1GP26641 437 aaKnown RBP9.37□□□□□ -0.91
COL28A1-205ENST00000453441 POLR2BP30876 1174 aaKnown RBP9.37□□□□□ -0.91
COL28A1-205ENST00000453441 PBX3P40426 434 aa9.37□□□□□ -0.91
COL28A1-205ENST00000453441 MXI1P50539 228 aa9.37□□□□□ -0.91
COL28A1-205ENST00000453441 STX17P56962 302 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms