RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 ARMT1Q9H993 441 aa5.06□□□□□ -1.6
USP40-209ENST00000452724 SLAMF7Q9NQ25 335 aa5.06□□□□□ -1.6
USP40-209ENST00000452724 SLC45A2Q9UMX9 530 aa5.06□□□□□ -1.6
USP40-209ENST00000452724 USP15Q9Y4E8 981 aaPredicted RBP5.06□□□□□ -1.6
USP40-209ENST00000452724 PCDHA1Q9Y5I3 950 aa5.06□□□□□ -1.6
USP40-209ENST00000452724 FRMPD2Q68DX3 1309 aaPredicted RBP5.05□□□□□ -1.6
USP40-209ENST00000452724 FAM227AF5H4B4 570 aa5.05□□□□□ -1.6
USP40-209ENST00000452724 KIF3BO15066 747 aa5.05□□□□□ -1.6
USP40-209ENST00000452724 ZNF185O15231 689 aa5.05□□□□□ -1.6
USP40-209ENST00000452724 AGFG2O95081 481 aa5.05□□□□□ -1.6
USP40-209ENST00000452724 GJB1P08034 283 aa5.05□□□□□ -1.6
USP40-209ENST00000452724 GNAI3P08754 354 aa5.05□□□□□ -1.6
USP40-209ENST00000452724 CKBP12277 381 aa5.05□□□□□ -1.6
USP40-209ENST00000452724 AGFG1P52594 562 aaKnown RBP5.05□□□□□ -1.6
USP40-209ENST00000452724 GNAI1P63096 354 aa5.05□□□□□ -1.6
USP40-209ENST00000452724 PDCD4Q53EL6 469 aaKnown RBP5.05□□□□□ -1.6
USP40-209ENST00000452724 TSHZ3Q63HK5 1081 aa5.05□□□□□ -1.6
USP40-209ENST00000452724 NPNTQ6UXI9 565 aa5.05□□□□□ -1.6
USP40-209ENST00000452724 PPP1R3BQ86XI6 285 aa5.05□□□□□ -1.6
USP40-209ENST00000452724 DGKHQ86XP1 1220 aa5.05□□□□□ -1.6
USP40-209ENST00000452724 KIAA0319LQ8IZA0 1049 aa5.05□□□□□ -1.6
USP40-209ENST00000452724 BEND2Q8NDZ0 799 aa5.05□□□□□ -1.6
USP40-209ENST00000452724 BRIX1Q8TDN6 353 aaKnown RBP5.05□□□□□ -1.6
USP40-209ENST00000452724 NUP133Q8WUM0 1156 aa5.05□□□□□ -1.6
USP40-209ENST00000452724 TNPO1Q92973 898 aaKnown RBP5.05□□□□□ -1.6
USP40-209ENST00000452724 BRD9Q9H8M2 597 aa5.05□□□□□ -1.6
USP40-209ENST00000452724 KLHL11Q9NVR0 708 aa5.05□□□□□ -1.6
USP40-209ENST00000452724 RLIMQ9NVW2 624 aa5.05□□□□□ -1.6
USP40-209ENST00000452724 RNF181Q9P0P0 153 aa5.05□□□□□ -1.6
USP40-209ENST00000452724 CFAP97Q9P2B7 532 aa5.05□□□□□ -1.6
USP40-209ENST00000452724 COL4A3Q01955 1670 aa5.05□□□□□ -1.6
USP40-209ENST00000452724 PIPSLA2A3N6 862 aa5.04□□□□□ -1.6
USP40-209ENST00000452724 A6NNZ2 444 aa5.04□□□□□ -1.6
USP40-209ENST00000452724 MATN4O95460 622 aa5.04□□□□□ -1.6
USP40-209ENST00000452724 AHSGP02765 367 aa5.04□□□□□ -1.6
USP40-209ENST00000452724 ANXA1P04083 346 aa5.04□□□□□ -1.6
USP40-209ENST00000452724 TGM1P22735 817 aa5.04□□□□□ -1.6
USP40-209ENST00000452724 NOMO3P69849 1222 aa5.04□□□□□ -1.6
USP40-209ENST00000452724 SLFN5Q08AF3 891 aa5.04□□□□□ -1.6
USP40-209ENST00000452724 FGL2Q14314 439 aa5.04□□□□□ -1.6
USP40-209ENST00000452724 LLGL1Q15334 1064 aa5.04□□□□□ -1.6
USP40-209ENST00000452724 NOMO2Q5JPE7 1267 aa5.04□□□□□ -1.6
USP40-209ENST00000452724 CHST15Q7LFX5 561 aaPredicted RBP5.04□□□□□ -1.6
USP40-209ENST00000452724 PDSS2Q86YH6 399 aa5.04□□□□□ -1.6
USP40-209ENST00000452724 TEX101Q9BY14 249 aa5.04□□□□□ -1.6
USP40-209ENST00000452724 RNPEPQ9H4A4 650 aa5.04□□□□□ -1.6
USP40-209ENST00000452724 SARS2Q9NP81 518 aaKnown RBP5.04□□□□□ -1.6
USP40-209ENST00000452724 GEMIN8Q9NWZ8 242 aaKnown RBP5.04□□□□□ -1.6
USP40-209ENST00000452724 STAP2Q9UGK3 403 aa5.04□□□□□ -1.6
USP40-209ENST00000452724 CPA4Q9UI42 421 aa5.04□□□□□ -1.6
USP40-209ENST00000452724 ZDHHC8Q9ULC8 765 aa5.04□□□□□ -1.6
USP40-209ENST00000452724 A0A1B0GTW7 788 aa5.03□□□□□ -1.6
USP40-209ENST00000452724 CAPN8A6NHC0 703 aa5.03□□□□□ -1.6
USP40-209ENST00000452724 PRSS29PA6NIE9 313 aa5.03□□□□□ -1.6
USP40-209ENST00000452724 FOSP01100 380 aaPredicted RBP5.03□□□□□ -1.6
USP40-209ENST00000452724 RARBP10826 455 aa5.03□□□□□ -1.6
USP40-209ENST00000452724 FCER1AP12319 257 aa5.03□□□□□ -1.6
USP40-209ENST00000452724 PHKA1P46020 1223 aa5.03□□□□□ -1.6
USP40-209ENST00000452724 PSMC1P62191 440 aaKnown RBP5.03□□□□□ -1.6
USP40-209ENST00000452724 GPSM2P81274 684 aa5.03□□□□□ -1.6
USP40-209ENST00000452724 RESTQ13127 1097 aa5.03□□□□□ -1.6
USP40-209ENST00000452724 KIF22Q14807 665 aa5.03□□□□□ -1.6
USP40-209ENST00000452724 KHDC1LQ5JSQ8 128 aa5.03□□□□□ -1.6
USP40-209ENST00000452724 CCDC181Q5TID7 509 aa5.03□□□□□ -1.6
USP40-209ENST00000452724 OLFML1Q6UWY5 402 aa5.03□□□□□ -1.6
USP40-209ENST00000452724 SRGAP1Q7Z6B7 1085 aa5.03□□□□□ -1.6
USP40-209ENST00000452724 PRIMA1Q86XR5 153 aa5.03□□□□□ -1.6
USP40-209ENST00000452724 TMIEQ8NEW7 156 aa5.03□□□□□ -1.6
USP40-209ENST00000452724 SLC9A6Q92581 669 aa5.03□□□□□ -1.6
USP40-209ENST00000452724 SCAMP4Q969E2 229 aa5.03□□□□□ -1.6
USP40-209ENST00000452724 TIFAQ96CG3 184 aa5.03□□□□□ -1.6
USP40-209ENST00000452724 MARS2Q96GW9 593 aaKnown RBP5.03□□□□□ -1.6
USP40-209ENST00000452724 KLHL32Q96NJ5 620 aa5.03□□□□□ -1.6
USP40-209ENST00000452724 NT5C1BQ96P26 610 aa5.03□□□□□ -1.6
USP40-209ENST00000452724 ZSWIM1Q9BR11 485 aa5.03□□□□□ -1.6
USP40-209ENST00000452724 CNNM1Q9NRU3 951 aa5.03□□□□□ -1.6
USP40-209ENST00000452724 PTGFRNQ9P2B2 879 aa5.03□□□□□ -1.6
USP40-209ENST00000452724 DKK2Q9UBU2 259 aa5.03□□□□□ -1.6
USP40-209ENST00000452724 PCDHA6Q9UN73 950 aa5.03□□□□□ -1.6
USP40-209ENST00000452724 L1RE1Q9UN81 338 aa5.03□□□□□ -1.6
USP40-209ENST00000452724 NOX1Q9Y5S8 564 aa5.03□□□□□ -1.6
USP40-209ENST00000452724 UNC119BA6NIH7 251 aa5.02□□□□□ -1.61
USP40-209ENST00000452724 ZNF785A8K8V0 405 aa5.02□□□□□ -1.61
USP40-209ENST00000452724 TPP1O14773 563 aa5.02□□□□□ -1.61
USP40-209ENST00000452724 CDKL5O76039 1030 aa5.02□□□□□ -1.61
USP40-209ENST00000452724 ZBED1O96006 694 aa5.02□□□□□ -1.61
USP40-209ENST00000452724 HRGP04196 525 aa5.02□□□□□ -1.61
USP40-209ENST00000452724 FGFR4P22455 802 aa5.02□□□□□ -1.61
USP40-209ENST00000452724 OCA2Q04671 838 aa5.02□□□□□ -1.61
USP40-209ENST00000452724 EXOSC9Q06265 439 aaKnown RBP5.02□□□□□ -1.61
USP40-209ENST00000452724 GALEQ14376 348 aa5.02□□□□□ -1.61
USP40-209ENST00000452724 EMC10Q5UCC4 262 aa5.02□□□□□ -1.61
USP40-209ENST00000452724 CCDC149Q6ZUS6 474 aa5.02□□□□□ -1.61
USP40-209ENST00000452724 MAEAQ7L5Y9 396 aa5.02□□□□□ -1.61
USP40-209ENST00000452724 MAPKAPK5Q8IW41 473 aa5.02□□□□□ -1.61
USP40-209ENST00000452724 CELF5Q8N6W0 485 aaKnown RBP5.02□□□□□ -1.61
USP40-209ENST00000452724 FAM156AQ8NDB6 213 aa5.02□□□□□ -1.61
USP40-209ENST00000452724 SLC17A8Q8NDX2 589 aa5.02□□□□□ -1.61
USP40-209ENST00000452724 PNKPQ96T60 521 aa5.02□□□□□ -1.61
USP40-209ENST00000452724 TLR10Q9BXR5 811 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms