RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 TCEAL5Q5H9L2 206 aa13.37□□□□□ -0.27
USP40-205ENST00000430158 CBWD3Q5JTY5 395 aa13.37□□□□□ -0.27
USP40-205ENST00000430158 CBWD5Q5RIA9 395 aa13.37□□□□□ -0.27
USP40-205ENST00000430158 PLPP4Q5VZY2 271 aa13.37□□□□□ -0.27
USP40-205ENST00000430158 PRSS55Q6UWB4 352 aaPredicted RBP13.37□□□□□ -0.27
USP40-205ENST00000430158 VN1R2Q8NFZ6 395 aa13.37□□□□□ -0.27
USP40-205ENST00000430158 TAS1R2Q8TE23 839 aa13.37□□□□□ -0.27
USP40-205ENST00000430158 SLC22A17Q8WUG5 538 aa13.37□□□□□ -0.27
USP40-205ENST00000430158 RIN2Q8WYP3 895 aaPredicted RBP13.37□□□□□ -0.27
USP40-205ENST00000430158 HPDLQ96IR7 371 aa13.37□□□□□ -0.27
USP40-205ENST00000430158 CNOT6LQ96LI5 555 aaKnown RBP13.37□□□□□ -0.27
USP40-205ENST00000430158 KLHL5Q96PQ7 755 aa13.37□□□□□ -0.27
USP40-205ENST00000430158 BPIFA3Q9BQP9 254 aa13.37□□□□□ -0.27
USP40-205ENST00000430158 RTP3Q9BQQ7 232 aa13.37□□□□□ -0.27
USP40-205ENST00000430158 CLSTN3Q9BQT9 956 aa13.37□□□□□ -0.27
USP40-205ENST00000430158 NSUN3Q9H649 340 aaKnown RBP13.37□□□□□ -0.27
USP40-205ENST00000430158 FNIP2Q9P278 1114 aa13.37□□□□□ -0.27
USP40-205ENST00000430158 MTRRQ9UBK8 725 aa13.37□□□□□ -0.27
USP40-205ENST00000430158 STXBP5LQ9Y2K9 1186 aa13.37□□□□□ -0.27
USP40-205ENST00000430158 NFE2L3Q9Y4A8 694 aa13.37□□□□□ -0.27
USP40-205ENST00000430158 NUB1Q9Y5A7 615 aa13.37□□□□□ -0.27
USP40-205ENST00000430158 BACE2Q9Y5Z0 518 aa13.37□□□□□ -0.27
USP40-205ENST00000430158 TEX28O15482 410 aa13.36□□□□□ -0.27
USP40-205ENST00000430158 FGFR1OPO95684 399 aaKnown RBP13.36□□□□□ -0.27
USP40-205ENST00000430158 ASS1P00966 412 aaKnown RBP13.36□□□□□ -0.27
USP40-205ENST00000430158 HLA-DRAP01903 254 aa13.36□□□□□ -0.27
USP40-205ENST00000430158 CCDC192P0DO97 292 aa13.36□□□□□ -0.27
USP40-205ENST00000430158 HOXB3P14651 431 aaPredicted RBP13.36□□□□□ -0.27
USP40-205ENST00000430158 ATICP31939 592 aa13.36□□□□□ -0.27
USP40-205ENST00000430158 NCOA4Q13772 614 aa13.36□□□□□ -0.27
USP40-205ENST00000430158 DUSP6Q16828 381 aa13.36□□□□□ -0.27
USP40-205ENST00000430158 SOWAHAQ2M3V2 549 aa13.36□□□□□ -0.27
USP40-205ENST00000430158 CTC1Q2NKJ3 1217 aa13.36□□□□□ -0.27
USP40-205ENST00000430158 VARS2Q5ST30 1063 aaKnown RBP13.36□□□□□ -0.27
USP40-205ENST00000430158 KRT39Q6A163 491 aa13.36□□□□□ -0.27
USP40-205ENST00000430158 USP37Q86T82 979 aa13.36□□□□□ -0.27
USP40-205ENST00000430158 DHX40Q8IX18 779 aaKnown RBP13.36□□□□□ -0.27
USP40-205ENST00000430158 LMO3Q8TAP4 145 aa13.36□□□□□ -0.27
USP40-205ENST00000430158 ELMO3Q96BJ8 720 aa13.36□□□□□ -0.27
USP40-205ENST00000430158 ZNF560Q96MR9 790 aa13.36□□□□□ -0.27
USP40-205ENST00000430158 APOBEC3GQ9HC16 384 aaKnown RBP13.36□□□□□ -0.27
USP40-205ENST00000430158 ENTPD7Q9NQZ7 604 aa13.36□□□□□ -0.27
USP40-205ENST00000430158 MRPL17Q9NRX2 175 aaKnown RBP13.36□□□□□ -0.27
USP40-205ENST00000430158 L1RE1Q9UN81 338 aa13.36□□□□□ -0.27
USP40-205ENST00000430158 TIMM13Q9Y5L4 95 aaPredicted RBP13.36□□□□□ -0.27
USP40-205ENST00000430158 C2CD2LO14523 706 aa13.35□□□□□ -0.27
USP40-205ENST00000430158 CYB561D2O14569 222 aa13.35□□□□□ -0.27
USP40-205ENST00000430158 GABRDO14764 452 aa13.35□□□□□ -0.27
USP40-205ENST00000430158 PER2O15055 1255 aa13.35□□□□□ -0.27
USP40-205ENST00000430158 CSPG5O95196 566 aa13.35□□□□□ -0.27
USP40-205ENST00000430158 GLP2RO95838 553 aa13.35□□□□□ -0.27
USP40-205ENST00000430158 C1RP00736 705 aa13.35□□□□□ -0.27
USP40-205ENST00000430158 URODP06132 367 aa13.35□□□□□ -0.27
USP40-205ENST00000430158 KRT19P08727 400 aa13.35□□□□□ -0.27
USP40-205ENST00000430158 RPL17P18621 184 aaKnown RBP13.35□□□□□ -0.27
USP40-205ENST00000430158 FMO5P49326 533 aa13.35□□□□□ -0.27
USP40-205ENST00000430158 SV2CQ496J9 727 aa13.35□□□□□ -0.27
USP40-205ENST00000430158 CCDC40Q4G0X9 1142 aa13.35□□□□□ -0.27
USP40-205ENST00000430158 MIIPQ5JXC2 388 aa13.35□□□□□ -0.27
USP40-205ENST00000430158 WSCD1Q658N2 575 aa13.35□□□□□ -0.27
USP40-205ENST00000430158 SLC8B1Q6J4K2 584 aa13.35□□□□□ -0.27
USP40-205ENST00000430158 LILRA6Q6PI73 481 aa13.35□□□□□ -0.27
USP40-205ENST00000430158 APTXQ7Z2E3 356 aaKnown RBP13.35□□□□□ -0.27
USP40-205ENST00000430158 OSTM1Q86WC4 334 aa13.35□□□□□ -0.27
USP40-205ENST00000430158 PDCL2Q8N4E4 241 aa13.35□□□□□ -0.27
USP40-205ENST00000430158 MICAL1Q8TDZ2 1067 aa13.35□□□□□ -0.27
USP40-205ENST00000430158 KBTBD7Q8WVZ9 684 aa13.35□□□□□ -0.27
USP40-205ENST00000430158 FANCLQ9NW38 375 aa13.35□□□□□ -0.27
USP40-205ENST00000430158 NME7Q9Y5B8 376 aa13.35□□□□□ -0.27
USP40-205ENST00000430158 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.34□□□□□ -0.27
USP40-205ENST00000430158 STX10O60499 249 aa13.34□□□□□ -0.27
USP40-205ENST00000430158 PAPLNO95428 1278 aa13.34□□□□□ -0.27
USP40-205ENST00000430158 VNN2O95498 520 aa13.34□□□□□ -0.27
USP40-205ENST00000430158 FAM163BP0C2L3 166 aa13.34□□□□□ -0.27
USP40-205ENST00000430158 LTBRP36941 435 aa13.34□□□□□ -0.27
USP40-205ENST00000430158 NRIP1P48552 1158 aa13.34□□□□□ -0.27
USP40-205ENST00000430158 MXI1P50539 228 aa13.34□□□□□ -0.27
USP40-205ENST00000430158 RBM10P98175 930 aaKnown RBP13.34□□□□□ -0.27
USP40-205ENST00000430158 MYL5Q02045 173 aa13.34□□□□□ -0.27
USP40-205ENST00000430158 KCNH2Q12809 1159 aa13.34□□□□□ -0.27
USP40-205ENST00000430158 MYO1EQ12965 1108 aa13.34□□□□□ -0.27
USP40-205ENST00000430158 ADAM15Q13444 863 aa13.34□□□□□ -0.27
USP40-205ENST00000430158 BIRC3Q13489 604 aa13.34□□□□□ -0.27
USP40-205ENST00000430158 PSMD5Q16401 504 aa13.34□□□□□ -0.27
USP40-205ENST00000430158 SGSM1Q2NKQ1 1148 aa13.34□□□□□ -0.27
USP40-205ENST00000430158 DCAF17Q5H9S7 520 aaPredicted RBP13.34□□□□□ -0.27
USP40-205ENST00000430158 SPOPLQ6IQ16 392 aa13.34□□□□□ -0.27
USP40-205ENST00000430158 DPY19L2P1Q6NXN4 242 aa13.34□□□□□ -0.27
USP40-205ENST00000430158 DSTYKQ6XUX3 929 aa13.34□□□□□ -0.27
USP40-205ENST00000430158 TMEM184AQ6ZMB5 413 aa13.34□□□□□ -0.27
USP40-205ENST00000430158 ANKS3Q6ZW76 656 aa13.34□□□□□ -0.27
USP40-205ENST00000430158 DPH6Q7L8W6 267 aa13.34□□□□□ -0.27
USP40-205ENST00000430158 CEP57Q86XR8 500 aa13.34□□□□□ -0.27
USP40-205ENST00000430158 TOP6BLQ8N6T0 577 aa13.34□□□□□ -0.27
USP40-205ENST00000430158 EFHBQ8N7U6 833 aa13.34□□□□□ -0.27
USP40-205ENST00000430158 FBXL13Q8NEE6 735 aa13.34□□□□□ -0.27
USP40-205ENST00000430158 APPL2Q8NEU8 664 aa13.34□□□□□ -0.27
USP40-205ENST00000430158 TAF4BQ92750 862 aa13.34□□□□□ -0.27
USP40-205ENST00000430158 CDCA3Q99618 268 aaPredicted RBP13.34□□□□□ -0.27
USP40-205ENST00000430158 PI4K2AQ9BTU6 479 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms