RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 PSMC1P62191 440 aaKnown RBP7.15□□□□□ -1.26
CCDC88A-206ENST00000430086 HABP2Q14520 560 aaPredicted RBP7.15□□□□□ -1.26
CCDC88A-206ENST00000430086 KHDC1LQ5JSQ8 128 aa7.15□□□□□ -1.26
CCDC88A-206ENST00000430086 CHST15Q7LFX5 561 aaPredicted RBP7.15□□□□□ -1.26
CCDC88A-206ENST00000430086 NACC2Q96BF6 587 aa7.15□□□□□ -1.26
CCDC88A-206ENST00000430086 B3GNT5Q9BYG0 378 aa7.15□□□□□ -1.26
CCDC88A-206ENST00000430086 RSAD1Q9HA92 442 aa7.15□□□□□ -1.26
CCDC88A-206ENST00000430086 PRDM11Q9NQV5 511 aa7.15□□□□□ -1.26
CCDC88A-206ENST00000430086 OBP2AQ9NY56 170 aa7.15□□□□□ -1.26
CCDC88A-206ENST00000430086 CTTNBP2NLQ9P2B4 639 aa7.15□□□□□ -1.26
CCDC88A-206ENST00000430086 PCDHA6Q9UN73 950 aa7.15□□□□□ -1.26
CCDC88A-206ENST00000430086 HS3ST3A1Q9Y663 406 aa7.15□□□□□ -1.26
CCDC88A-206ENST00000430086 CCDC195A0A1B0GUA6 201 aa7.14□□□□□ -1.27
CCDC88A-206ENST00000430086 A0A1W2PS29 197 aa7.14□□□□□ -1.27
CCDC88A-206ENST00000430086 ERN1O75460 977 aaKnown RBP7.14□□□□□ -1.27
CCDC88A-206ENST00000430086 SPDEFO95238 335 aa7.14□□□□□ -1.27
CCDC88A-206ENST00000430086 GNAI2P04899 355 aa7.14□□□□□ -1.27
CCDC88A-206ENST00000430086 MYBP10242 640 aa7.14□□□□□ -1.27
CCDC88A-206ENST00000430086 ZNF135P52742 658 aaPredicted RBP7.14□□□□□ -1.27
CCDC88A-206ENST00000430086 SOX8P57073 446 aa7.14□□□□□ -1.27
CCDC88A-206ENST00000430086 PTPAQ15257 358 aa7.14□□□□□ -1.27
CCDC88A-206ENST00000430086 SRGAP1Q7Z6B7 1085 aa7.14□□□□□ -1.27
CCDC88A-206ENST00000430086 ULK2Q8IYT8 1036 aa7.14□□□□□ -1.27
CCDC88A-206ENST00000430086 AMER2Q8N7J2 671 aa7.14□□□□□ -1.27
CCDC88A-206ENST00000430086 RNF31Q96EP0 1072 aa7.14□□□□□ -1.27
CCDC88A-206ENST00000430086 MRGPRX1Q96LB2 322 aa7.14□□□□□ -1.27
CCDC88A-206ENST00000430086 C8orf48Q96LL4 319 aa7.14□□□□□ -1.27
CCDC88A-206ENST00000430086 CNPPD1Q9BV87 410 aa7.14□□□□□ -1.27
CCDC88A-206ENST00000430086 FAM204AQ9H8W3 233 aa7.14□□□□□ -1.27
CCDC88A-206ENST00000430086 CNNM1Q9NRU3 951 aa7.14□□□□□ -1.27
CCDC88A-206ENST00000430086 DDX20Q9UHI6 824 aaKnown RBP7.14□□□□□ -1.27
CCDC88A-206ENST00000430086 L1RE1Q9UN81 338 aa7.14□□□□□ -1.27
CCDC88A-206ENST00000430086 PIPSLA2A3N6 862 aa7.13□□□□□ -1.27
CCDC88A-206ENST00000430086 CAPN8A6NHC0 703 aa7.13□□□□□ -1.27
CCDC88A-206ENST00000430086 UNC119BA6NIH7 251 aa7.13□□□□□ -1.27
CCDC88A-206ENST00000430086 E7ENX8 843 aa7.13□□□□□ -1.27
CCDC88A-206ENST00000430086 ZFPL1O95159 310 aa7.13□□□□□ -1.27
CCDC88A-206ENST00000430086 HRGP04196 525 aa7.13□□□□□ -1.27
CCDC88A-206ENST00000430086 HDCP19113 662 aa7.13□□□□□ -1.27
CCDC88A-206ENST00000430086 GDF5P43026 501 aa7.13□□□□□ -1.27
CCDC88A-206ENST00000430086 VAV2P52735 878 aa7.13□□□□□ -1.27
CCDC88A-206ENST00000430086 TAP2Q03519 686 aa7.13□□□□□ -1.27
CCDC88A-206ENST00000430086 EXOSC9Q06265 439 aaKnown RBP7.13□□□□□ -1.27
CCDC88A-206ENST00000430086 SCAPQ12770 1279 aa7.13□□□□□ -1.27
CCDC88A-206ENST00000430086 TP53BP2Q13625 1128 aa7.13□□□□□ -1.27
CCDC88A-206ENST00000430086 GRM3Q14832 879 aa7.13□□□□□ -1.27
CCDC88A-206ENST00000430086 CRB2Q5IJ48 1285 aa7.13□□□□□ -1.27
CCDC88A-206ENST00000430086 SP5Q6BEB4 398 aaPredicted RBP7.13□□□□□ -1.27
CCDC88A-206ENST00000430086 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP7.13□□□□□ -1.27
CCDC88A-206ENST00000430086 MAEAQ7L5Y9 396 aa7.13□□□□□ -1.27
CCDC88A-206ENST00000430086 TMPRSS9Q7Z410 1059 aa7.13□□□□□ -1.27
CCDC88A-206ENST00000430086 CLNKQ7Z7G1 428 aa7.13□□□□□ -1.27
CCDC88A-206ENST00000430086 USP37Q86T82 979 aa7.13□□□□□ -1.27
CCDC88A-206ENST00000430086 LARP4BQ92615 738 aaKnown RBP7.13□□□□□ -1.27
CCDC88A-206ENST00000430086 SMOQ99835 787 aa7.13□□□□□ -1.27
CCDC88A-206ENST00000430086 TINAGL1Q9GZM7 467 aaPredicted RBP7.13□□□□□ -1.27
CCDC88A-206ENST00000430086 SERHL2Q9H4I8 314 aa7.13□□□□□ -1.27
CCDC88A-206ENST00000430086 PIH1D1Q9NWS0 290 aaKnown RBP7.13□□□□□ -1.27
CCDC88A-206ENST00000430086 ETAA1Q9NY74 926 aa7.13□□□□□ -1.27
CCDC88A-206ENST00000430086 ANKFY1Q9P2R3 1169 aa7.13□□□□□ -1.27
CCDC88A-206ENST00000430086 AGAP1Q9UPQ3 857 aa7.13□□□□□ -1.27
CCDC88A-206ENST00000430086 PRAMEF33A0A0G2JMD5 474 aa7.12□□□□□ -1.27
CCDC88A-206ENST00000430086 A6NNZ2 444 aa7.12□□□□□ -1.27
CCDC88A-206ENST00000430086 CYR61O00622 381 aa7.12□□□□□ -1.27
CCDC88A-206ENST00000430086 PRAMEF10O60809 474 aa7.12□□□□□ -1.27
CCDC88A-206ENST00000430086 SUN1O94901 812 aa7.12□□□□□ -1.27
CCDC88A-206ENST00000430086 EGR2P11161 476 aaPredicted RBP7.12□□□□□ -1.27
CCDC88A-206ENST00000430086 ABHD17BQ5VST6 288 aa7.12□□□□□ -1.27
CCDC88A-206ENST00000430086 TAPT1Q6NXT6 567 aa7.12□□□□□ -1.27
CCDC88A-206ENST00000430086 PPP1R32Q7Z5V6 425 aa7.12□□□□□ -1.27
CCDC88A-206ENST00000430086 COLGALT2Q8IYK4 626 aa7.12□□□□□ -1.27
CCDC88A-206ENST00000430086 POC1BQ8TC44 478 aa7.12□□□□□ -1.27
CCDC88A-206ENST00000430086 LRIG1Q96JA1 1093 aa7.12□□□□□ -1.27
CCDC88A-206ENST00000430086 TRIB1Q96RU8 372 aa7.12□□□□□ -1.27
CCDC88A-206ENST00000430086 KRTAP4-11Q9BYQ6 195 aa7.12□□□□□ -1.27
CCDC88A-206ENST00000430086 UNKLQ9H9P5 680 aaKnown RBP7.12□□□□□ -1.27
CCDC88A-206ENST00000430086 ZMAT3Q9HA38 289 aaKnown RBP7.12□□□□□ -1.27
CCDC88A-206ENST00000430086 ATP6V0A4Q9HBG4 840 aa7.12□□□□□ -1.27
CCDC88A-206ENST00000430086 STAP2Q9UGK3 403 aa7.12□□□□□ -1.27
CCDC88A-206ENST00000430086 MED16Q9Y2X0 877 aa7.12□□□□□ -1.27
CCDC88A-206ENST00000430086 POLRMTO00411 1230 aaKnown RBP7.11□□□□□ -1.27
CCDC88A-206ENST00000430086 PHGDHO43175 533 aaKnown RBP7.11□□□□□ -1.27
CCDC88A-206ENST00000430086 ZBED1O96006 694 aa7.11□□□□□ -1.27
CCDC88A-206ENST00000430086 ZEB1P37275 1124 aaPredicted RBP7.11□□□□□ -1.27
CCDC88A-206ENST00000430086 ANXA11P50995 505 aaKnown RBP7.11□□□□□ -1.27
CCDC88A-206ENST00000430086 USP14P54578 494 aa7.11□□□□□ -1.27
CCDC88A-206ENST00000430086 BLOC1S1P78537 153 aa7.11□□□□□ -1.27
CCDC88A-206ENST00000430086 TAP1Q03518 808 aa7.11□□□□□ -1.27
CCDC88A-206ENST00000430086 DYRK1AQ13627 763 aa7.11□□□□□ -1.27
CCDC88A-206ENST00000430086 GEN1Q17RS7 908 aa7.11□□□□□ -1.27
CCDC88A-206ENST00000430086 CYB5RLQ6IPT4 315 aa7.11□□□□□ -1.27
CCDC88A-206ENST00000430086 SWSAP1Q6NVH7 229 aa7.11□□□□□ -1.27
CCDC88A-206ENST00000430086 GPR149Q86SP6 731 aa7.11□□□□□ -1.27
CCDC88A-206ENST00000430086 CELF5Q8N6W0 485 aaKnown RBP7.11□□□□□ -1.27
CCDC88A-206ENST00000430086 NT5C1BQ96P26 610 aa7.11□□□□□ -1.27
CCDC88A-206ENST00000430086 PRRX2Q99811 253 aa7.11□□□□□ -1.27
CCDC88A-206ENST00000430086 WDR11Q9BZH6 1224 aa7.11□□□□□ -1.27
CCDC88A-206ENST00000430086 CPA4Q9UI42 421 aa7.11□□□□□ -1.27
CCDC88A-206ENST00000430086 FRMPD2Q68DX3 1309 aaPredicted RBP7.1□□□□□ -1.27
CCDC88A-206ENST00000430086 A0A1W2PPL8 197 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms