RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 DPP7Q9UHL4 492 aa3.02□□□□□ -1.93
VPS13A-208ENST00000423463 HACL1Q9UJ83 578 aa3.02□□□□□ -1.93
VPS13A-208ENST00000423463 DDX19BQ9UMR2 479 aa3.02□□□□□ -1.93
VPS13A-208ENST00000423463 VWA7Q9Y334 891 aa3.02□□□□□ -1.93
VPS13A-208ENST00000423463 ZNF541Q9H0D2 1346 aa3.02□□□□□ -1.93
VPS13A-208ENST00000423463 MED23Q9ULK4 1368 aa3.02□□□□□ -1.93
VPS13A-208ENST00000423463 GOLGA8AA7E2F4 631 aa3.02□□□□□ -1.93
VPS13A-208ENST00000423463 YDJCA8MPS7 323 aa3.02□□□□□ -1.93
VPS13A-208ENST00000423463 GOLGA8BA8MQT2 603 aa3.02□□□□□ -1.93
VPS13A-208ENST00000423463 PLIN1O60240 522 aa3.02□□□□□ -1.93
VPS13A-208ENST00000423463 TAF5LO75529 589 aa3.02□□□□□ -1.93
VPS13A-208ENST00000423463 PDE8BO95263 885 aa3.02□□□□□ -1.93
VPS13A-208ENST00000423463 IFIT1P09914 478 aaKnown RBP3.02□□□□□ -1.93
VPS13A-208ENST00000423463 CPEP16870 476 aa3.02□□□□□ -1.93
VPS13A-208ENST00000423463 CDK11BP21127 795 aaKnown RBP3.02□□□□□ -1.93
VPS13A-208ENST00000423463 RPS12P25398 132 aaKnown RBP3.02□□□□□ -1.93
VPS13A-208ENST00000423463 MSX2P35548 267 aaPredicted RBP3.02□□□□□ -1.93
VPS13A-208ENST00000423463 IL15P40933 162 aaPredicted RBP3.02□□□□□ -1.93
VPS13A-208ENST00000423463 MMP14P50281 582 aa3.02□□□□□ -1.93
VPS13A-208ENST00000423463 ADCY7P51828 1080 aa3.02□□□□□ -1.93
VPS13A-208ENST00000423463 EFEMP1Q12805 493 aa3.02□□□□□ -1.93
VPS13A-208ENST00000423463 FSCN1Q16658 493 aaKnown RBP3.02□□□□□ -1.93
VPS13A-208ENST00000423463 LRRC24Q50LG9 513 aa3.02□□□□□ -1.93
VPS13A-208ENST00000423463 METTL24Q5JXM2 366 aa3.02□□□□□ -1.93
VPS13A-208ENST00000423463 ATG9AQ7Z3C6 839 aa3.02□□□□□ -1.93
VPS13A-208ENST00000423463 PNMA8AQ86V59 439 aaPredicted RBP3.02□□□□□ -1.93
VPS13A-208ENST00000423463 SPATS2Q86XZ4 545 aaKnown RBP3.02□□□□□ -1.93
VPS13A-208ENST00000423463 RPAP2Q8IXW5 612 aaPredicted RBP3.02□□□□□ -1.93
VPS13A-208ENST00000423463 PRPF38AQ8NAV1 312 aaKnown RBP3.02□□□□□ -1.93
VPS13A-208ENST00000423463 AGBL3Q8NEM8 1001 aa3.02□□□□□ -1.93
VPS13A-208ENST00000423463 DNERQ8NFT8 737 aa3.02□□□□□ -1.93
VPS13A-208ENST00000423463 Q8TCH9 128 aa3.02□□□□□ -1.93
VPS13A-208ENST00000423463 SSH3Q8TE77 659 aa3.02□□□□□ -1.93
VPS13A-208ENST00000423463 SLC2A13Q96QE2 648 aa3.02□□□□□ -1.93
VPS13A-208ENST00000423463 DBNDD1Q9H9R9 158 aa3.02□□□□□ -1.93
VPS13A-208ENST00000423463 CD248Q9HCU0 757 aa3.02□□□□□ -1.93
VPS13A-208ENST00000423463 CD209Q9NNX6 404 aa3.02□□□□□ -1.93
VPS13A-208ENST00000423463 LAMB2P55268 1798 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 ZNF623O75123 536 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 KATNA1O75449 491 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 RAD17O75943 681 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 STC2O76061 302 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 LY86O95711 162 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 GAAP10253 952 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 IL1R1P14778 569 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 FGFR2P21802 821 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 ENPP1P22413 925 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 HIBADHP31937 336 aaKnown RBP3.01□□□□□ -1.93
VPS13A-208ENST00000423463 GMPSP49915 693 aaPredicted RBP3.01□□□□□ -1.93
VPS13A-208ENST00000423463 ADAM8P78325 824 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 SRSF2Q01130 221 aaKnown RBP3.01□□□□□ -1.93
VPS13A-208ENST00000423463 FSTL1Q12841 308 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 FOXL1Q12952 345 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 G3BP1Q13283 466 aaKnown RBP eCLIP3.01□□□□□ -1.93
VPS13A-208ENST00000423463 GRM7Q14831 915 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 CPEB4Q17RY0 729 aaKnown RBP eCLIP3.01□□□□□ -1.93
VPS13A-208ENST00000423463 STRIP1Q5VSL9 837 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 ZNF804AQ7Z570 1209 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 SLC41A1Q8IVJ1 513 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 CNTD1Q8N815 330 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 VGLL2Q8N8G2 317 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 PLA2G15Q8NCC3 412 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 KLHDC4Q8TBB5 520 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 GFM2Q969S9 779 aaKnown RBP3.01□□□□□ -1.93
VPS13A-208ENST00000423463 UIMC1Q96RL1 719 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 CCDC8Q9H0W5 538 aaPredicted RBP3.01□□□□□ -1.93
VPS13A-208ENST00000423463 DEF6Q9H4E7 631 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 TAF1DQ9H5J8 278 aaPredicted RBP3.01□□□□□ -1.93
VPS13A-208ENST00000423463 ZBTB40Q9NUA8 1239 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 DDX56Q9NY93 547 aaKnown RBP3.01□□□□□ -1.93
VPS13A-208ENST00000423463 GPRC5DQ9NZD1 345 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 SBF1O95248 1867 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 UBE2QL1A1L167 161 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 ALG1L2C9J202 215 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 PSMD14O00487 310 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 PRAMEF4O60810 478 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 HMMRO75330 724 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 SEC24DO94855 1032 aaPredicted RBP3.01□□□□□ -1.93
VPS13A-208ENST00000423463 SLC5A1P13866 664 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 EPHX2P34913 555 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 EPS15P42566 896 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 C1QTNF8P60827 252 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 FKBP1AP62942 108 aaKnown RBP3.01□□□□□ -1.93
VPS13A-208ENST00000423463 PUM3Q15397 648 aaKnown RBP3.01□□□□□ -1.93
VPS13A-208ENST00000423463 UGT8Q16880 541 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 CAVIN4Q5BKX8 364 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 TTLL5Q6EMB2 1281 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 USP50Q70EL3 339 aaPredicted RBP3.01□□□□□ -1.93
VPS13A-208ENST00000423463 OR14C36Q8NHC7 312 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 TDRD7Q8NHU6 1098 aaKnown RBP3.01□□□□□ -1.93
VPS13A-208ENST00000423463 STAG1Q8WVM7 1258 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 LMBR1Q8WVP7 490 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 LPIN2Q92539 896 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 SLC7A6OSQ96CW6 309 aaPredicted RBP3.01□□□□□ -1.93
VPS13A-208ENST00000423463 MTMR8Q96EF0 704 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 FAM84BQ96KN1 310 aaPredicted RBP3.01□□□□□ -1.93
VPS13A-208ENST00000423463 ADOQ96SZ5 270 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 IL23AQ9NPF7 189 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 TLR9Q9NR96 1032 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 ADARB2Q9NS39 739 aaKnown RBP3.01□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms