RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 XKR9Q5GH70 373 aa11.65□□□□□ -0.55
LIMS1-207ENST00000422797 EFHC2Q5JST6 749 aa11.65□□□□□ -0.55
LIMS1-207ENST00000422797 ABRAQ8N0Z2 381 aa11.65□□□□□ -0.55
LIMS1-207ENST00000422797 SPICE1Q8N0Z3 855 aa11.65□□□□□ -0.55
LIMS1-207ENST00000422797 ARHGAP24Q8N264 748 aa11.65□□□□□ -0.55
LIMS1-207ENST00000422797 ATP11CQ8NB49 1132 aa11.65□□□□□ -0.55
LIMS1-207ENST00000422797 TTC13Q8NBP0 860 aa11.65□□□□□ -0.55
LIMS1-207ENST00000422797 C10orf82Q8WW14 230 aa11.65□□□□□ -0.55
LIMS1-207ENST00000422797 POMGNT1Q8WZA1 660 aa11.65□□□□□ -0.55
LIMS1-207ENST00000422797 SAAL1Q96ER3 474 aa11.65□□□□□ -0.55
LIMS1-207ENST00000422797 MMADHCQ9H3L0 296 aaPredicted RBP11.65□□□□□ -0.55
LIMS1-207ENST00000422797 ZFATQ9P243 1243 aa11.65□□□□□ -0.55
LIMS1-207ENST00000422797 ANKFY1Q9P2R3 1169 aa11.65□□□□□ -0.55
LIMS1-207ENST00000422797 STOML1Q9UBI4 398 aa11.65□□□□□ -0.55
LIMS1-207ENST00000422797 CCPG1Q9ULG6 757 aa11.65□□□□□ -0.55
LIMS1-207ENST00000422797 CNTN6Q9UQ52 1028 aa11.65□□□□□ -0.55
LIMS1-207ENST00000422797 CHKBQ9Y259 395 aa11.65□□□□□ -0.55
LIMS1-207ENST00000422797 R3HDM2Q9Y2K5 976 aaKnown RBP11.65□□□□□ -0.55
LIMS1-207ENST00000422797 ZNF646O15015 1829 aaPredicted RBP11.64□□□□□ -0.55
LIMS1-207ENST00000422797 GOLGA8IPA6NC78 632 aa11.64□□□□□ -0.55
LIMS1-207ENST00000422797 A6NHS1 94 aa11.64□□□□□ -0.55
LIMS1-207ENST00000422797 GOLGA8JA6NMD2 632 aa11.64□□□□□ -0.55
LIMS1-207ENST00000422797 TISP43B9A030 160 aa11.64□□□□□ -0.55
LIMS1-207ENST00000422797 DDX39AO00148 427 aaKnown RBP11.64□□□□□ -0.55
LIMS1-207ENST00000422797 ATP5BP06576 529 aaKnown RBP11.64□□□□□ -0.55
LIMS1-207ENST00000422797 CETPP11597 493 aa11.64□□□□□ -0.55
LIMS1-207ENST00000422797 CA4P22748 312 aa11.64□□□□□ -0.55
LIMS1-207ENST00000422797 PAX7P23759 505 aa11.64□□□□□ -0.55
LIMS1-207ENST00000422797 MARK3P27448 753 aa11.64□□□□□ -0.55
LIMS1-207ENST00000422797 PTGER2P43116 358 aa11.64□□□□□ -0.55
LIMS1-207ENST00000422797 VCPP55072 806 aaKnown RBP11.64□□□□□ -0.55
LIMS1-207ENST00000422797 GEMIN4P57678 1058 aaKnown RBP11.64□□□□□ -0.55
LIMS1-207ENST00000422797 NOMO3P69849 1222 aa11.64□□□□□ -0.55
LIMS1-207ENST00000422797 TRIP13Q15645 432 aaPredicted RBP11.64□□□□□ -0.55
LIMS1-207ENST00000422797 SEPT7Q16181 437 aaKnown RBP11.64□□□□□ -0.55
LIMS1-207ENST00000422797 TMEM63BQ5T3F8 832 aa11.64□□□□□ -0.55
LIMS1-207ENST00000422797 WDR78Q5VTH9 848 aa11.64□□□□□ -0.55
LIMS1-207ENST00000422797 FKBP1CQ5VVH2 108 aa11.64□□□□□ -0.55
LIMS1-207ENST00000422797 FAM91A1Q658Y4 838 aa11.64□□□□□ -0.55
LIMS1-207ENST00000422797 CDCA2Q69YH5 1023 aaPredicted RBP11.64□□□□□ -0.55
LIMS1-207ENST00000422797 MIS18BP1Q6P0N0 1132 aa11.64□□□□□ -0.55
LIMS1-207ENST00000422797 MAEAQ7L5Y9 396 aa11.64□□□□□ -0.55
LIMS1-207ENST00000422797 CPNE8Q86YQ8 564 aa11.64□□□□□ -0.55
LIMS1-207ENST00000422797 CCDC125Q86Z20 511 aa11.64□□□□□ -0.55
LIMS1-207ENST00000422797 CEP120Q8N960 986 aa11.64□□□□□ -0.55
LIMS1-207ENST00000422797 SUPT20HQ8NEM7 779 aa11.64□□□□□ -0.55
LIMS1-207ENST00000422797 FEZF2Q8TBJ5 459 aa11.64□□□□□ -0.55
LIMS1-207ENST00000422797 ASAP3Q8TDY4 903 aa11.64□□□□□ -0.55
LIMS1-207ENST00000422797 FAM151AQ8WW52 585 aa11.64□□□□□ -0.55
LIMS1-207ENST00000422797 PRCCQ92733 491 aaPredicted RBP11.64□□□□□ -0.55
LIMS1-207ENST00000422797 ATP6V0A1Q93050 837 aa11.64□□□□□ -0.55
LIMS1-207ENST00000422797 SPDL1Q96EA4 605 aa11.64□□□□□ -0.55
LIMS1-207ENST00000422797 C9orf72Q96LT7 481 aa11.64□□□□□ -0.55
LIMS1-207ENST00000422797 PAIP2Q9BPZ3 127 aaKnown RBP11.64□□□□□ -0.55
LIMS1-207ENST00000422797 VPS11Q9H270 941 aa11.64□□□□□ -0.55
LIMS1-207ENST00000422797 SPATS2LQ9NUQ6 558 aaKnown RBP11.64□□□□□ -0.55
LIMS1-207ENST00000422797 CHORDC1Q9UHD1 332 aaPredicted RBP11.64□□□□□ -0.55
LIMS1-207ENST00000422797 TBK1Q9UHD2 729 aa11.64□□□□□ -0.55
LIMS1-207ENST00000422797 GGT7Q9UJ14 662 aa11.64□□□□□ -0.55
LIMS1-207ENST00000422797 MAFGO15525 162 aa11.63□□□□□ -0.55
LIMS1-207ENST00000422797 TYROBPO43914 113 aa11.63□□□□□ -0.55
LIMS1-207ENST00000422797 CCDC22O60826 627 aa11.63□□□□□ -0.55
LIMS1-207ENST00000422797 DNAJC6O75061 913 aa11.63□□□□□ -0.55
LIMS1-207ENST00000422797 PEX11AO75192 247 aa11.63□□□□□ -0.55
LIMS1-207ENST00000422797 TGDSO95455 350 aa11.63□□□□□ -0.55
LIMS1-207ENST00000422797 LDHAP00338 332 aaKnown RBP11.63□□□□□ -0.55
LIMS1-207ENST00000422797 TPBGLP0DKB5 382 aa11.63□□□□□ -0.55
LIMS1-207ENST00000422797 AP3M2P53677 418 aa11.63□□□□□ -0.55
LIMS1-207ENST00000422797 ARL4CP56559 192 aa11.63□□□□□ -0.55
LIMS1-207ENST00000422797 UBXN2AP68543 259 aa11.63□□□□□ -0.55
LIMS1-207ENST00000422797 DNAJC3Q13217 504 aa11.63□□□□□ -0.55
LIMS1-207ENST00000422797 MAMLD1Q13495 774 aa11.63□□□□□ -0.55
LIMS1-207ENST00000422797 NBPF20Q3BBV1 942 aa11.63□□□□□ -0.55
LIMS1-207ENST00000422797 ZACNQ401N2 412 aa11.63□□□□□ -0.55
LIMS1-207ENST00000422797 STYK1Q6J9G0 422 aa11.63□□□□□ -0.55
LIMS1-207ENST00000422797 CYP4F22Q6NT55 531 aa11.63□□□□□ -0.55
LIMS1-207ENST00000422797 FAM47EQ6ZV65 393 aa11.63□□□□□ -0.55
LIMS1-207ENST00000422797 POLNQ7Z5Q5 900 aa11.63□□□□□ -0.55
LIMS1-207ENST00000422797 ANKLE1Q8NAG6 615 aa11.63□□□□□ -0.55
LIMS1-207ENST00000422797 FAM13CQ8NE31 585 aa11.63□□□□□ -0.55
LIMS1-207ENST00000422797 MICAL1Q8TDZ2 1067 aa11.63□□□□□ -0.55
LIMS1-207ENST00000422797 APBB2Q92870 758 aa11.63□□□□□ -0.55
LIMS1-207ENST00000422797 UTP4Q969X6 686 aaKnown RBP11.63□□□□□ -0.55
LIMS1-207ENST00000422797 NUDCD1Q96RS6 583 aa11.63□□□□□ -0.55
LIMS1-207ENST00000422797 FNBP1Q96RU3 617 aa11.63□□□□□ -0.55
LIMS1-207ENST00000422797 ZNF518BQ9C0D4 1074 aa11.63□□□□□ -0.55
LIMS1-207ENST00000422797 MAF1Q9H063 256 aa11.63□□□□□ -0.55
LIMS1-207ENST00000422797 VCXQ9H320 206 aa11.63□□□□□ -0.55
LIMS1-207ENST00000422797 VPS37BQ9H9H4 285 aa11.63□□□□□ -0.55
LIMS1-207ENST00000422797 DBNDD1Q9H9R9 158 aa11.63□□□□□ -0.55
LIMS1-207ENST00000422797 MLXIPLQ9NP71 852 aa11.63□□□□□ -0.55
LIMS1-207ENST00000422797 CYLDQ9NQC7 956 aa11.63□□□□□ -0.55
LIMS1-207ENST00000422797 GINM1Q9NU53 330 aa11.63□□□□□ -0.55
LIMS1-207ENST00000422797 ZFP69BQ9UJL9 534 aa11.63□□□□□ -0.55
LIMS1-207ENST00000422797 USP21Q9UK80 565 aa11.63□□□□□ -0.55
LIMS1-207ENST00000422797 ZNF148Q9UQR1 794 aa11.63□□□□□ -0.55
LIMS1-207ENST00000422797 CCDC189A1A4V9 331 aa11.62□□□□□ -0.55
LIMS1-207ENST00000422797 HNRNPDLO14979 420 aaKnown RBP11.62□□□□□ -0.55
LIMS1-207ENST00000422797 TLR3O15455 904 aaKnown RBP11.62□□□□□ -0.55
LIMS1-207ENST00000422797 SPAG6O75602 509 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms