RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 USP49Q70CQ1 688 aa12.51□□□□□ -0.41
SQSTM1-203ENST00000422245 DYMQ7RTS9 669 aa12.51□□□□□ -0.41
SQSTM1-203ENST00000422245 ZNF720Q7Z2F6 126 aa12.51□□□□□ -0.41
SQSTM1-203ENST00000422245 HS6ST3Q8IZP7 471 aa12.51□□□□□ -0.41
SQSTM1-203ENST00000422245 ADSSL1Q8N142 457 aa12.51□□□□□ -0.41
SQSTM1-203ENST00000422245 SHKBP1Q8TBC3 707 aa12.51□□□□□ -0.41
SQSTM1-203ENST00000422245 IRF7Q92985 503 aa12.51□□□□□ -0.41
SQSTM1-203ENST00000422245 SENP8Q96LD8 212 aa12.51□□□□□ -0.41
SQSTM1-203ENST00000422245 TRMT61BQ9BVS5 477 aaKnown RBP12.51□□□□□ -0.41
SQSTM1-203ENST00000422245 PLA2G2FQ9BZM2 168 aa12.51□□□□□ -0.41
SQSTM1-203ENST00000422245 GPR88Q9GZN0 384 aa12.51□□□□□ -0.41
SQSTM1-203ENST00000422245 SLITRK6Q9H5Y7 841 aa12.51□□□□□ -0.41
SQSTM1-203ENST00000422245 BRD9Q9H8M2 597 aa12.51□□□□□ -0.41
SQSTM1-203ENST00000422245 TRPV4Q9HBA0 871 aa12.51□□□□□ -0.41
SQSTM1-203ENST00000422245 SPATA6Q9NWH7 488 aaPredicted RBP12.51□□□□□ -0.41
SQSTM1-203ENST00000422245 HSFX1Q9UBD0 423 aa12.51□□□□□ -0.41
SQSTM1-203ENST00000422245 ASB3Q9Y575 518 aa12.51□□□□□ -0.41
SQSTM1-203ENST00000422245 CACNA1IQ9P0X4 2223 aa12.51□□□□□ -0.41
SQSTM1-203ENST00000422245 DMDP11532 3685 aa12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 TISP43B9A030 160 aa12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 SPTLC1O15269 473 aa12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 LAMTOR5O43504 91 aa12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 LRRN2O75325 713 aa12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 MOSPD3O75425 235 aa12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 IL18RAPO95256 599 aa12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 FGF19O95750 216 aa12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 LMNAP02545 664 aaKnown RBP12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 CYP11A1P05108 521 aa12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 PSMC3P17980 439 aa12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 TARSP26639 723 aaKnown RBP12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 RPS9P46781 194 aaKnown RBP12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 ALDH1A3P47895 512 aa12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 TAF6P49848 677 aa12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 DUSP4Q13115 394 aa12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 ALCAMQ13740 583 aa12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 GRM2Q14416 872 aa12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 TEAD2Q15562 447 aa12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 ZNF528Q3MIS6 628 aa12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 L1TD1Q5T7N2 865 aaKnown RBP12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 CENPPQ6IPU0 288 aa12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 SV2BQ7L1I2 683 aa12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 METTL23Q86XA0 190 aa12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 NT5DC4Q86YG4 428 aa12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 TMC8Q8IU68 726 aa12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 OR10T2Q8NGX3 314 aa12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 ZSCAN18Q8TBC5 510 aaPredicted RBP12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 KCNG4Q8TDN1 519 aa12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 POMGNT1Q8WZA1 660 aa12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 E2F7Q96AV8 911 aa12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 CLDN23Q96B33 292 aa12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 BORCS6Q96GS4 357 aa12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 ZNF560Q96MR9 790 aa12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 CLIC6Q96NY7 704 aa12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 ACCSQ96QU6 501 aa12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 STRA6Q9BX79 667 aa12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 DNAJC25Q9H1X3 360 aa12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 CRISPLD1Q9H336 500 aa12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 MRPL44Q9H9J2 332 aaKnown RBP12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 TRPV5Q9NQA5 729 aa12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 OLFML3Q9NRN5 406 aa12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 HEBP1Q9NRV9 189 aa12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 FBXO4Q9UKT5 387 aa12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 R4GN57 208 aa12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 COL4A3Q01955 1670 aa12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 COL4A2P08572 1712 aa12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 EP300Q09472 2414 aaPredicted RBP12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 CFAP54Q96N23 3096 aa12.5□□□□□ -0.41
SQSTM1-203ENST00000422245 F5P12259 2224 aa12.49□□□□□ -0.41
SQSTM1-203ENST00000422245 TCHHQ07283 1943 aa12.49□□□□□ -0.41
SQSTM1-203ENST00000422245 MYMKA6NI61 221 aa12.49□□□□□ -0.41
SQSTM1-203ENST00000422245 MAN2B1O00754 1011 aa12.49□□□□□ -0.41
SQSTM1-203ENST00000422245 NRG2O14511 850 aaPredicted RBP12.49□□□□□ -0.41
SQSTM1-203ENST00000422245 ADSSP30520 456 aa12.49□□□□□ -0.41
SQSTM1-203ENST00000422245 PNPLA4P41247 253 aa12.49□□□□□ -0.41
SQSTM1-203ENST00000422245 STAT6P42226 847 aa12.49□□□□□ -0.41
SQSTM1-203ENST00000422245 CEBPZQ03701 1054 aaKnown RBP12.49□□□□□ -0.41
SQSTM1-203ENST00000422245 SMARCB1Q12824 385 aa12.49□□□□□ -0.41
SQSTM1-203ENST00000422245 SV2CQ496J9 727 aa12.49□□□□□ -0.41
SQSTM1-203ENST00000422245 FAM173BQ6P4H8 233 aa12.49□□□□□ -0.41
SQSTM1-203ENST00000422245 VITQ6UXI7 678 aa12.49□□□□□ -0.41
SQSTM1-203ENST00000422245 ITIH5Q86UX2 942 aa12.49□□□□□ -0.41
SQSTM1-203ENST00000422245 ATAD1Q8NBU5 361 aa12.49□□□□□ -0.41
SQSTM1-203ENST00000422245 C2orf15Q8WU43 125 aaKnown RBP12.49□□□□□ -0.41
SQSTM1-203ENST00000422245 PSMG2Q969U7 264 aa12.49□□□□□ -0.41
SQSTM1-203ENST00000422245 DNAJC19Q96DA6 116 aa12.49□□□□□ -0.41
SQSTM1-203ENST00000422245 ZSWIM3Q96MP5 696 aa12.49□□□□□ -0.41
SQSTM1-203ENST00000422245 PYM1Q9BRP8 204 aaKnown RBP12.49□□□□□ -0.41
SQSTM1-203ENST00000422245 IER2Q9BTL4 223 aa12.49□□□□□ -0.41
SQSTM1-203ENST00000422245 LRRC3Q9BY71 257 aa12.49□□□□□ -0.41
SQSTM1-203ENST00000422245 ZCWPW1Q9H0M4 648 aa12.49□□□□□ -0.41
SQSTM1-203ENST00000422245 ZSCAN16Q9H4T2 348 aaPredicted RBP12.49□□□□□ -0.41
SQSTM1-203ENST00000422245 DPP3Q9NY33 737 aa12.49□□□□□ -0.41
SQSTM1-203ENST00000422245 MTMR6Q9Y217 621 aa12.49□□□□□ -0.41
SQSTM1-203ENST00000422245 MTF2Q9Y483 593 aaPredicted RBP12.49□□□□□ -0.41
SQSTM1-203ENST00000422245 ZNF292O60281 2723 aa12.49□□□□□ -0.41
SQSTM1-203ENST00000422245 SCN1AP35498 2009 aa12.49□□□□□ -0.41
SQSTM1-203ENST00000422245 VPS13AQ96RL7 3174 aa12.49□□□□□ -0.41
SQSTM1-203ENST00000422245 OTOGLQ3ZCN5 2332 aa12.48□□□□□ -0.41
SQSTM1-203ENST00000422245 A0A1W2PRU2 124 aa12.48□□□□□ -0.41
SQSTM1-203ENST00000422245 FRMD3A2A2Y4 597 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms