RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 REXO4Q9GZR2 422 aaKnown RBP5.65□□□□□ -1.5
VPS54-204ENST00000416400 KCNH6Q9H252 994 aa5.65□□□□□ -1.5
VPS54-204ENST00000416400 VPS11Q9H270 941 aa5.65□□□□□ -1.5
VPS54-204ENST00000416400 PARPBPQ9NWS1 579 aa5.65□□□□□ -1.5
VPS54-204ENST00000416400 AFF4Q9UHB7 1163 aaKnown RBP5.65□□□□□ -1.5
VPS54-204ENST00000416400 SLC23A1Q9UHI7 598 aa5.65□□□□□ -1.5
VPS54-204ENST00000416400 LRCH1Q9Y2L9 728 aa5.65□□□□□ -1.5
VPS54-204ENST00000416400 IL18RAPO95256 599 aa5.64□□□□□ -1.51
VPS54-204ENST00000416400 PARP1P09874 1014 aaKnown RBP5.64□□□□□ -1.51
VPS54-204ENST00000416400 SBK3P0C264 359 aa5.64□□□□□ -1.51
VPS54-204ENST00000416400 TSHRP16473 764 aa5.64□□□□□ -1.51
VPS54-204ENST00000416400 HDCP19113 662 aa5.64□□□□□ -1.51
VPS54-204ENST00000416400 ABCB4P21439 1286 aa5.64□□□□□ -1.51
VPS54-204ENST00000416400 SCNN1GP51170 649 aa5.64□□□□□ -1.51
VPS54-204ENST00000416400 USP39Q53GS9 565 aaKnown RBP5.64□□□□□ -1.51
VPS54-204ENST00000416400 FAM209BQ5JX69 171 aa5.64□□□□□ -1.51
VPS54-204ENST00000416400 ANKS6Q68DC2 871 aa5.64□□□□□ -1.51
VPS54-204ENST00000416400 ZNF529Q6P280 563 aa5.64□□□□□ -1.51
VPS54-204ENST00000416400 DRICH1Q6PGQ1 229 aaPredicted RBP5.64□□□□□ -1.51
VPS54-204ENST00000416400 ZNF783Q6ZMS7 281 aa5.64□□□□□ -1.51
VPS54-204ENST00000416400 Q6ZRM9 215 aa5.64□□□□□ -1.51
VPS54-204ENST00000416400 IL17RDQ8NFM7 739 aa5.64□□□□□ -1.51
VPS54-204ENST00000416400 NLGN4YQ8NFZ3 816 aaPredicted RBP5.64□□□□□ -1.51
VPS54-204ENST00000416400 OR10H5Q8NGA6 315 aa5.64□□□□□ -1.51
VPS54-204ENST00000416400 OR52N2Q8NGI0 321 aa5.64□□□□□ -1.51
VPS54-204ENST00000416400 KIAA1191Q96A73 305 aa5.64□□□□□ -1.51
VPS54-204ENST00000416400 MSLNLQ96KJ4 702 aa5.64□□□□□ -1.51
VPS54-204ENST00000416400 PHACTR3Q96KR7 559 aa5.64□□□□□ -1.51
VPS54-204ENST00000416400 MYOCQ99972 504 aa5.64□□□□□ -1.51
VPS54-204ENST00000416400 CRB3Q9BUF7 120 aa5.64□□□□□ -1.51
VPS54-204ENST00000416400 BRD9Q9H8M2 597 aa5.64□□□□□ -1.51
VPS54-204ENST00000416400 SACM1LQ9NTJ5 587 aa5.64□□□□□ -1.51
VPS54-204ENST00000416400 CFAP97Q9P2B7 532 aa5.64□□□□□ -1.51
VPS54-204ENST00000416400 SRRDQ9UH36 339 aa5.64□□□□□ -1.51
VPS54-204ENST00000416400 MED16Q9Y2X0 877 aa5.64□□□□□ -1.51
VPS54-204ENST00000416400 TCRBV7S2A1N4TA0A589 114 aa5.63□□□□□ -1.51
VPS54-204ENST00000416400 KRTAP23-1A1A580 65 aa5.63□□□□□ -1.51
VPS54-204ENST00000416400 KLRG2A4D1S0 409 aaPredicted RBP5.63□□□□□ -1.51
VPS54-204ENST00000416400 AMHP03971 560 aa5.63□□□□□ -1.51
VPS54-204ENST00000416400 NOMO3P69849 1222 aa5.63□□□□□ -1.51
VPS54-204ENST00000416400 HABP2Q14520 560 aaPredicted RBP5.63□□□□□ -1.51
VPS54-204ENST00000416400 KIF22Q14807 665 aa5.63□□□□□ -1.51
VPS54-204ENST00000416400 SLC44A4Q53GD3 710 aa5.63□□□□□ -1.51
VPS54-204ENST00000416400 INO80DQ53TQ3 878 aaPredicted RBP5.63□□□□□ -1.51
VPS54-204ENST00000416400 SPDYAQ5MJ70 313 aa5.63□□□□□ -1.51
VPS54-204ENST00000416400 AOPEPQ8N6M6 819 aa5.63□□□□□ -1.51
VPS54-204ENST00000416400 RNF169Q8NCN4 708 aa5.63□□□□□ -1.51
VPS54-204ENST00000416400 SLC35B2Q8TB61 432 aa5.63□□□□□ -1.51
VPS54-204ENST00000416400 DCLRE1CQ96SD1 692 aaKnown RBP5.63□□□□□ -1.51
VPS54-204ENST00000416400 NDC1Q9BTX1 674 aa5.63□□□□□ -1.51
VPS54-204ENST00000416400 WDR12Q9GZL7 423 aaKnown RBP5.63□□□□□ -1.51
VPS54-204ENST00000416400 ST6GALNAC1Q9NSC7 600 aaPredicted RBP5.63□□□□□ -1.51
VPS54-204ENST00000416400 RLIMQ9NVW2 624 aa5.63□□□□□ -1.51
VPS54-204ENST00000416400 STK32BQ9NY57 414 aa5.63□□□□□ -1.51
VPS54-204ENST00000416400 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP5.63□□□□□ -1.51
VPS54-204ENST00000416400 NCANO14594 1321 aa5.63□□□□□ -1.51
VPS54-204ENST00000416400 XDHP47989 1333 aa5.63□□□□□ -1.51
VPS54-204ENST00000416400 F8W8V4 182 aa5.62□□□□□ -1.51
VPS54-204ENST00000416400 TBC1D4O60343 1298 aa5.62□□□□□ -1.51
VPS54-204ENST00000416400 SLC43A1O75387 559 aa5.62□□□□□ -1.51
VPS54-204ENST00000416400 HAUS5O94927 633 aa5.62□□□□□ -1.51
VPS54-204ENST00000416400 GNAI2P04899 355 aa5.62□□□□□ -1.51
VPS54-204ENST00000416400 SPATA31D3P0C874 917 aa5.62□□□□□ -1.51
VPS54-204ENST00000416400 PPM1AP35813 382 aa5.62□□□□□ -1.51
VPS54-204ENST00000416400 PHKA1P46020 1223 aa5.62□□□□□ -1.51
VPS54-204ENST00000416400 ARFIP2P53365 341 aa5.62□□□□□ -1.51
VPS54-204ENST00000416400 RABGGTBP53611 331 aa5.62□□□□□ -1.51
VPS54-204ENST00000416400 TNFAIP2Q03169 654 aa5.62□□□□□ -1.51
VPS54-204ENST00000416400 SLC13A2Q13183 592 aa5.62□□□□□ -1.51
VPS54-204ENST00000416400 HSP90AB4PQ58FF6 505 aa5.62□□□□□ -1.51
VPS54-204ENST00000416400 NAIF1Q69YI7 327 aaPredicted RBP5.62□□□□□ -1.51
VPS54-204ENST00000416400 SPATA31D4Q6ZUB0 917 aa5.62□□□□□ -1.51
VPS54-204ENST00000416400 GPRIN1Q7Z2K8 1008 aa5.62□□□□□ -1.51
VPS54-204ENST00000416400 UBE3BQ7Z3V4 1068 aa5.62□□□□□ -1.51
VPS54-204ENST00000416400 TMPRSS6Q8IU80 811 aa5.62□□□□□ -1.51
VPS54-204ENST00000416400 PCSK9Q8NBP7 692 aaKnown RBP5.62□□□□□ -1.51
VPS54-204ENST00000416400 SH3RF3Q8TEJ3 882 aaPredicted RBP5.62□□□□□ -1.51
VPS54-204ENST00000416400 NMD3Q96D46 503 aaKnown RBP5.62□□□□□ -1.51
VPS54-204ENST00000416400 COLEC11Q9BWP8 271 aa5.62□□□□□ -1.51
VPS54-204ENST00000416400 BRIP1Q9BX63 1249 aa5.62□□□□□ -1.51
VPS54-204ENST00000416400 CPEB1Q9BZB8 566 aaKnown RBP5.62□□□□□ -1.51
VPS54-204ENST00000416400 DPH1Q9BZG8 443 aa5.62□□□□□ -1.51
VPS54-204ENST00000416400 JKAMPQ9P055 326 aa5.62□□□□□ -1.51
VPS54-204ENST00000416400 COL20A1Q9P218 1284 aa5.62□□□□□ -1.51
VPS54-204ENST00000416400 CDC23Q9UJX2 597 aa5.62□□□□□ -1.51
VPS54-204ENST00000416400 SORCS3Q9UPU3 1222 aa5.62□□□□□ -1.51
VPS54-204ENST00000416400 PAXBP1Q9Y5B6 917 aa5.62□□□□□ -1.51
VPS54-204ENST00000416400 DIRC3C9JPN6 131 aa5.61□□□□□ -1.51
VPS54-204ENST00000416400 BTN3A1O00481 513 aa5.61□□□□□ -1.51
VPS54-204ENST00000416400 APOL1O14791 398 aa5.61□□□□□ -1.51
VPS54-204ENST00000416400 NBNO60934 754 aa5.61□□□□□ -1.51
VPS54-204ENST00000416400 SCAF4O95104 1147 aaKnown RBP5.61□□□□□ -1.51
VPS54-204ENST00000416400 ABHD16AO95870 558 aa5.61□□□□□ -1.51
VPS54-204ENST00000416400 GJB1P08034 283 aa5.61□□□□□ -1.51
VPS54-204ENST00000416400 RARBP10826 455 aa5.61□□□□□ -1.51
VPS54-204ENST00000416400 MAPK10P53779 464 aa5.61□□□□□ -1.51
VPS54-204ENST00000416400 RPS16P62249 146 aaKnown RBP5.61□□□□□ -1.51
VPS54-204ENST00000416400 MXRA7P84157 204 aa5.61□□□□□ -1.51
VPS54-204ENST00000416400 PMS2P11Q13670 270 aa5.61□□□□□ -1.51
VPS54-204ENST00000416400 TRIM14Q14142 442 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms