RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 DEFB107AQ8IZN7 70 aa9.78□□□□□ -0.84
COL28A1-201ENST00000399429 GSTCDQ8NEC7 633 aa9.78□□□□□ -0.84
COL28A1-201ENST00000399429 RFWD2Q8NHY2 731 aa9.78□□□□□ -0.84
COL28A1-201ENST00000399429 FAF2Q96CS3 445 aa9.78□□□□□ -0.84
COL28A1-201ENST00000399429 TRIM11Q96F44 468 aa9.78□□□□□ -0.84
COL28A1-201ENST00000399429 EBF3Q9H4W6 596 aa9.78□□□□□ -0.84
COL28A1-201ENST00000399429 LRRC4BQ9NT99 713 aa9.78□□□□□ -0.84
COL28A1-201ENST00000399429 BLOC1S4Q9NUP1 217 aa9.78□□□□□ -0.84
COL28A1-201ENST00000399429 RPL26L1Q9UNX3 145 aaKnown RBP9.78□□□□□ -0.84
COL28A1-201ENST00000399429 EXOC7Q9UPT5 735 aa9.78□□□□□ -0.84
COL28A1-201ENST00000399429 UMODL1Q5DID0 1318 aa9.77□□□□□ -0.84
COL28A1-201ENST00000399429 C2CD2LO14523 706 aa9.77□□□□□ -0.84
COL28A1-201ENST00000399429 NEMP1O14524 444 aa9.77□□□□□ -0.84
COL28A1-201ENST00000399429 BMP3P12645 472 aa9.77□□□□□ -0.84
COL28A1-201ENST00000399429 AMPD1P23109 780 aa9.77□□□□□ -0.84
COL28A1-201ENST00000399429 RPS6P62753 249 aaKnown RBP9.77□□□□□ -0.84
COL28A1-201ENST00000399429 CCDC14Q49A88 953 aa9.77□□□□□ -0.84
COL28A1-201ENST00000399429 FAM102BQ5T8I3 360 aa9.77□□□□□ -0.84
COL28A1-201ENST00000399429 MFSD5Q6N075 450 aa9.77□□□□□ -0.84
COL28A1-201ENST00000399429 KCNK18Q7Z418 384 aa9.77□□□□□ -0.84
COL28A1-201ENST00000399429 GPR141Q7Z602 305 aa9.77□□□□□ -0.84
COL28A1-201ENST00000399429 DEPDC1BQ8WUY9 529 aa9.77□□□□□ -0.84
COL28A1-201ENST00000399429 POMGNT1Q8WZA1 660 aa9.77□□□□□ -0.84
COL28A1-201ENST00000399429 NRBF2Q96F24 287 aa9.77□□□□□ -0.84
COL28A1-201ENST00000399429 ISCA1Q9BUE6 129 aa9.77□□□□□ -0.84
COL28A1-201ENST00000399429 SOX13Q9UN79 622 aa9.77□□□□□ -0.84
COL28A1-201ENST00000399429 MAGED2Q9UNF1 606 aaPredicted RBP9.77□□□□□ -0.84
COL28A1-201ENST00000399429 MROH7Q68CQ1 1323 aa9.77□□□□□ -0.85
COL28A1-201ENST00000399429 FRMPD1Q5SYB0 1578 aa9.77□□□□□ -0.85
COL28A1-201ENST00000399429 STAM2O75886 525 aa9.77□□□□□ -0.85
COL28A1-201ENST00000399429 NOL4O94818 638 aa9.77□□□□□ -0.85
COL28A1-201ENST00000399429 VSTM1Q6UX27 236 aa9.77□□□□□ -0.85
COL28A1-201ENST00000399429 NCAPG2Q86XI2 1143 aa9.77□□□□□ -0.85
COL28A1-201ENST00000399429 RNF148Q8N7C7 305 aa9.77□□□□□ -0.85
COL28A1-201ENST00000399429 LRRC57Q8N9N7 239 aa9.77□□□□□ -0.85
COL28A1-201ENST00000399429 RBM46Q8TBY0 533 aaKnown RBP9.77□□□□□ -0.85
COL28A1-201ENST00000399429 ATP6V0A1Q93050 837 aa9.77□□□□□ -0.85
COL28A1-201ENST00000399429 ART4Q93070 314 aa9.77□□□□□ -0.85
COL28A1-201ENST00000399429 TMA16Q96EY4 203 aaKnown RBP9.77□□□□□ -0.85
COL28A1-201ENST00000399429 PAFAH2Q99487 392 aa9.77□□□□□ -0.85
COL28A1-201ENST00000399429 C12orf65Q9H3J6 166 aaKnown RBP9.77□□□□□ -0.85
COL28A1-201ENST00000399429 LRRC4CQ9HCJ2 640 aa9.77□□□□□ -0.85
COL28A1-201ENST00000399429 TMEM2Q9UHN6 1383 aa9.77□□□□□ -0.85
COL28A1-201ENST00000399429 MAN1A2O60476 641 aa9.77□□□□□ -0.85
COL28A1-201ENST00000399429 PROCP04070 461 aa9.77□□□□□ -0.85
COL28A1-201ENST00000399429 CCNB1P14635 433 aa9.77□□□□□ -0.85
COL28A1-201ENST00000399429 SSTR1P30872 391 aa9.77□□□□□ -0.85
COL28A1-201ENST00000399429 VAMP7P51809 220 aa9.77□□□□□ -0.85
COL28A1-201ENST00000399429 DNAJC24Q6P3W2 148 aa9.77□□□□□ -0.85
COL28A1-201ENST00000399429 DHDDSQ86SQ9 333 aa9.77□□□□□ -0.85
COL28A1-201ENST00000399429 CYP4X1Q8N118 509 aa9.77□□□□□ -0.85
COL28A1-201ENST00000399429 ZNF786Q8N393 782 aa9.77□□□□□ -0.85
COL28A1-201ENST00000399429 RASGEF1CQ8N431 466 aa9.77□□□□□ -0.85
COL28A1-201ENST00000399429 DCLK2Q8N568 766 aa9.77□□□□□ -0.85
COL28A1-201ENST00000399429 CDKL2Q92772 493 aa9.77□□□□□ -0.85
COL28A1-201ENST00000399429 CMTM5Q96DZ9 223 aa9.77□□□□□ -0.85
COL28A1-201ENST00000399429 KIAA1586Q9HCI6 787 aa9.77□□□□□ -0.85
COL28A1-201ENST00000399429 DDX28Q9NUL7 540 aaKnown RBP9.77□□□□□ -0.85
COL28A1-201ENST00000399429 UVRAGQ9P2Y5 699 aa9.77□□□□□ -0.85
COL28A1-201ENST00000399429 ZBTB1Q9Y2K1 713 aa9.77□□□□□ -0.85
COL28A1-201ENST00000399429 MROH2AA6NES4 1674 aa9.77□□□□□ -0.85
COL28A1-201ENST00000399429 C15orf38-AP3S2A0A0A6YYH1 394 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 ANKRD63C9JTQ0 380 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 ESRRBO95718 433 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 MAPK10P53779 464 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 NUP107P57740 925 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 FOLH1Q04609 750 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 UTS2BQ765I0 119 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 ARPINQ7Z6K5 226 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 STKLD1Q8NE28 680 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 SPATA17Q96L03 361 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 VPS11Q9H270 941 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 PCYOX1Q9UHG3 505 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 STK24Q9Y6E0 443 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 A0A1W2PPM1 405 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 TCRBV7S2A1N4TA0A589 114 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 RBM47A0AV96 593 aaKnown RBP9.76□□□□□ -0.85
COL28A1-201ENST00000399429 TRIM49D1C9J1S8 452 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 KLHL2O95198 593 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 ALOX15P16050 662 aaPredicted RBP9.76□□□□□ -0.85
COL28A1-201ENST00000399429 VCLP18206 1134 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 CASP7P55210 303 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 C21orf59P57076 290 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 ASTE1Q2TB18 679 aaPredicted RBP9.76□□□□□ -0.85
COL28A1-201ENST00000399429 ALYREFQ86V81 257 aaKnown RBP9.76□□□□□ -0.85
COL28A1-201ENST00000399429 ULK2Q8IYT8 1036 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 ZFRQ96KR1 1074 aaKnown RBP9.76□□□□□ -0.85
COL28A1-201ENST00000399429 PNMA5Q96PV4 448 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 UPF3AQ9H1J1 476 aaKnown RBP9.76□□□□□ -0.85
COL28A1-201ENST00000399429 EURLQ9NYK6 297 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 E2F8A0AVK6 867 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 P4HA2O15460 535 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 WEE2P0C1S8 567 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 UQCRBP14927 111 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 CYP11B2P19099 503 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 NUDT2P50583 147 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 BPIFB4P59827 614 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 SLC1A5Q15758 541 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 BRDTQ58F21 947 aaPredicted RBP9.76□□□□□ -0.85
COL28A1-201ENST00000399429 RINLQ6ZS11 566 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms