RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 WEE2P0C1S8 567 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 MLH1P40692 756 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 ZNF235Q14590 738 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 NKX1-1Q15270 411 aaPredicted RBP10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 WDR72Q3MJ13 1102 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 XKR3Q5GH77 459 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 LMBRD2Q68DH5 695 aaPredicted RBP10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 CPA5Q8WXQ8 436 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 SLC10A4Q96EP9 437 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 MPP4Q96JB8 637 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 SIK2Q9H0K1 926 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 GPBP1L1Q9HC44 474 aaPredicted RBP10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 MAD2L2Q9UI95 211 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 PPP1R3GB7ZBB8 358 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 PRKCBP05771 671 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 DDX5P17844 614 aaKnown RBP10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 SPRP35270 261 aaPredicted RBP10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 FNTAP49354 379 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 ITGA8P53708 1063 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 PTK2BQ14289 1009 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 SNRNP35Q16560 246 aaKnown RBP10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 ELMSAN1Q6PJG2 1045 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 HEATR4Q86WZ0 1026 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 NSL1Q96IY1 281 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 WRNIP1Q96S55 665 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 MAP3K14Q99558 947 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 PCMTD2Q9NV79 361 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 MARCOQ9UEW3 520 aaPredicted RBP10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 BCORL1Q5H9F3 1711 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 SEC24DO94855 1032 aaPredicted RBP10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 SMAD1Q15797 465 aaKnown RBP10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 DALRD3Q5D0E6 543 aaKnown RBP10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 KLHDC7AQ5VTJ3 777 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 LVRNQ6Q4G3 990 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 C4orf22Q6V702 233 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 PLEKHM3Q6ZWE6 761 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 ZNF677Q86XU0 584 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 KIF2BQ8N4N8 673 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 TMA16Q96EY4 203 aaKnown RBP10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 MOV10L1Q9BXT6 1211 aaKnown RBP10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 FUT8Q9BYC5 575 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 PLEKHA5Q9HAU0 1116 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 JPH1Q9HDC5 661 aaPredicted RBP10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 NDFIP2Q9NV92 336 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 NSMCE4AQ9NXX6 385 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 PLAGL2Q9UPG8 496 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 NEMP1O14524 444 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 AKAP10O43572 662 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 HSPA1AP0DMV8 641 aaKnown RBP10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 HSPA1BP0DMV9 641 aaKnown RBP10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 H2AFXP16104 143 aaPredicted RBP10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 COPB2P35606 906 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 HSD17B3P37058 310 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 VHLP40337 213 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 SPP2Q13103 211 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 SLC29A2Q14542 456 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 BTBD8Q5XKL5 378 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 MARCH10Q8NA82 808 aaPredicted RBP10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 SPON2Q9BUD6 331 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 ADNPQ9H2P0 1102 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 GRID1Q9ULK0 1009 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 ABCC3O15438 1527 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 MOCS2O96007 188 aaPredicted RBP10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 ACADSP16219 412 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 COILP38432 576 aaPredicted RBP10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 NLRP11P59045 1033 aaKnown RBP10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 NCOA4Q13772 614 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 NDUFA5Q16718 116 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 LRRC36Q1X8D7 754 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 SGSM1Q2NKQ1 1148 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 C3orf62Q6ZUJ4 267 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 KRT73Q86Y46 540 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 ZNF483Q8TF39 744 aaPredicted RBP10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 ASIC4Q96FT7 647 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 CELF4Q9BZC1 486 aaKnown RBP10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 NOD2Q9HC29 1040 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 SYTL2Q9HCH5 934 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 CDY2AQ9Y6F7 541 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 CDY1Q9Y6F8 540 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 IQGAP3Q86VI3 1631 aa10.73□□□□□ -0.69
LIMCH1-203ENST00000396595 HNRNPRO43390 633 aaKnown RBP10.72□□□□□ -0.69
LIMCH1-203ENST00000396595 SRP72O76094 671 aaKnown RBP10.72□□□□□ -0.69
LIMCH1-203ENST00000396595 DDHD2O94830 711 aa10.72□□□□□ -0.69
LIMCH1-203ENST00000396595 MYBP10242 640 aa10.72□□□□□ -0.69
LIMCH1-203ENST00000396595 PLA2G4AP47712 749 aa10.72□□□□□ -0.69
LIMCH1-203ENST00000396595 ERFP50548 548 aa10.72□□□□□ -0.69
LIMCH1-203ENST00000396595 FXR2P51116 673 aaKnown RBP eCLIP10.72□□□□□ -0.69
LIMCH1-203ENST00000396595 USP10Q14694 798 aaKnown RBP10.72□□□□□ -0.69
LIMCH1-203ENST00000396595 RSAD1Q9HA92 442 aa10.72□□□□□ -0.69
LIMCH1-203ENST00000396595 HECW2Q9P2P5 1572 aa10.72□□□□□ -0.69
LIMCH1-203ENST00000396595 PRLRP16471 622 aa10.72□□□□□ -0.69
LIMCH1-203ENST00000396595 HMOX2P30519 316 aa10.72□□□□□ -0.69
LIMCH1-203ENST00000396595 SSTR3P32745 418 aaPredicted RBP10.72□□□□□ -0.69
LIMCH1-203ENST00000396595 KCNV1Q6PIU1 500 aa10.72□□□□□ -0.69
LIMCH1-203ENST00000396595 CCDC149Q6ZUS6 474 aa10.72□□□□□ -0.69
LIMCH1-203ENST00000396595 TAS2R42Q7RTR8 314 aa10.72□□□□□ -0.69
LIMCH1-203ENST00000396595 RNF149Q8NC42 400 aa10.72□□□□□ -0.69
LIMCH1-203ENST00000396595 MCEEQ96PE7 176 aa10.72□□□□□ -0.69
LIMCH1-203ENST00000396595 ADAM33Q9BZ11 813 aa10.72□□□□□ -0.69
LIMCH1-203ENST00000396595 PABPC3Q9H361 631 aaKnown RBP10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms