RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 C4orf33Q8N1A6 199 aa13.45□□□□□ -0.26
SHMT1-205ENST00000395684 ERP27Q96DN0 273 aa13.45□□□□□ -0.26
SHMT1-205ENST00000395684 TRABDQ9H4I3 376 aa13.45□□□□□ -0.26
SHMT1-205ENST00000395684 PXMP2Q9NR77 195 aa13.45□□□□□ -0.26
SHMT1-205ENST00000395684 ZNF148Q9UQR1 794 aa13.45□□□□□ -0.26
SHMT1-205ENST00000395684 CEP83Q9Y592 693 aa13.45□□□□□ -0.26
SHMT1-205ENST00000395684 PRPF4O43172 522 aaKnown RBP eCLIP13.44□□□□□ -0.26
SHMT1-205ENST00000395684 EXTL3O43909 919 aa13.44□□□□□ -0.26
SHMT1-205ENST00000395684 GNA15P30679 374 aa13.44□□□□□ -0.26
SHMT1-205ENST00000395684 RPA3P35244 121 aaPredicted RBP13.44□□□□□ -0.26
SHMT1-205ENST00000395684 PIK3CAP42336 1068 aa13.44□□□□□ -0.26
SHMT1-205ENST00000395684 ARSEP51690 589 aa13.44□□□□□ -0.26
SHMT1-205ENST00000395684 YARSP54577 528 aaKnown RBP13.44□□□□□ -0.26
SHMT1-205ENST00000395684 LACTBP83111 547 aaPredicted RBP13.44□□□□□ -0.26
SHMT1-205ENST00000395684 CUL2Q13617 745 aa13.44□□□□□ -0.26
SHMT1-205ENST00000395684 PSMD6Q15008 389 aa13.44□□□□□ -0.26
SHMT1-205ENST00000395684 MFSD7Q6UXD7 560 aa13.44□□□□□ -0.26
SHMT1-205ENST00000395684 PHF13Q86YI8 300 aaPredicted RBP13.44□□□□□ -0.26
SHMT1-205ENST00000395684 LARGE2Q8N3Y3 721 aa13.44□□□□□ -0.26
SHMT1-205ENST00000395684 FBF1Q8TES7 1133 aa13.44□□□□□ -0.26
SHMT1-205ENST00000395684 TMEM237Q96Q45 408 aa13.44□□□□□ -0.26
SHMT1-205ENST00000395684 FNBP1Q96RU3 617 aa13.44□□□□□ -0.26
SHMT1-205ENST00000395684 GMLQ99445 158 aa13.44□□□□□ -0.26
SHMT1-205ENST00000395684 FOXP3Q9BZS1 431 aa13.44□□□□□ -0.26
SHMT1-205ENST00000395684 ARHGAP28Q9P2N2 729 aa13.44□□□□□ -0.26
SHMT1-205ENST00000395684 PCDHB4Q9Y5E5 795 aa13.44□□□□□ -0.26
SHMT1-205ENST00000395684 ATF7P17544 494 aaPredicted RBP13.44□□□□□ -0.26
SHMT1-205ENST00000395684 TARSP26639 723 aaKnown RBP13.44□□□□□ -0.26
SHMT1-205ENST00000395684 ATP11AP98196 1134 aa13.44□□□□□ -0.26
SHMT1-205ENST00000395684 ENPEPQ07075 957 aa13.44□□□□□ -0.26
SHMT1-205ENST00000395684 GPS1Q13098 491 aa13.44□□□□□ -0.26
SHMT1-205ENST00000395684 SLC1A5Q15758 541 aa13.44□□□□□ -0.26
SHMT1-205ENST00000395684 TDRPQ86YL5 185 aa13.44□□□□□ -0.26
SHMT1-205ENST00000395684 FEZF2Q8TBJ5 459 aa13.44□□□□□ -0.26
SHMT1-205ENST00000395684 MRRFQ96E11 262 aaKnown RBP13.44□□□□□ -0.26
SHMT1-205ENST00000395684 VCPIP1Q96JH7 1222 aa13.44□□□□□ -0.26
SHMT1-205ENST00000395684 SLITRK1Q96PX8 696 aa13.44□□□□□ -0.26
SHMT1-205ENST00000395684 HAPLN2Q9GZV7 340 aa13.44□□□□□ -0.26
SHMT1-205ENST00000395684 UBN1Q9NPG3 1134 aa13.44□□□□□ -0.26
SHMT1-205ENST00000395684 SLC5A4Q9NY91 659 aa13.44□□□□□ -0.26
SHMT1-205ENST00000395684 PGAP2Q9UHJ9 254 aa13.44□□□□□ -0.26
SHMT1-205ENST00000395684 ZNF541Q9H0D2 1346 aa13.43□□□□□ -0.26
SHMT1-205ENST00000395684 A0A1W2PPM1 405 aa13.43□□□□□ -0.26
SHMT1-205ENST00000395684 FGFR1P11362 822 aa13.43□□□□□ -0.26
SHMT1-205ENST00000395684 KRT15P19012 456 aa13.43□□□□□ -0.26
SHMT1-205ENST00000395684 PAX7P23759 505 aa13.43□□□□□ -0.26
SHMT1-205ENST00000395684 CDC25CP30307 473 aa13.43□□□□□ -0.26
SHMT1-205ENST00000395684 NR1H3Q13133 447 aa13.43□□□□□ -0.26
SHMT1-205ENST00000395684 SPARCL1Q14515 664 aa13.43□□□□□ -0.26
SHMT1-205ENST00000395684 WDR72Q3MJ13 1102 aa13.43□□□□□ -0.26
SHMT1-205ENST00000395684 ARHGEF16Q5VV41 709 aa13.43□□□□□ -0.26
SHMT1-205ENST00000395684 SWSAP1Q6NVH7 229 aa13.43□□□□□ -0.26
SHMT1-205ENST00000395684 POTEAQ6S8J7 498 aa13.43□□□□□ -0.26
SHMT1-205ENST00000395684 BZW1Q7L1Q6 419 aaKnown RBP13.43□□□□□ -0.26
SHMT1-205ENST00000395684 VSIG1Q86XK7 387 aa13.43□□□□□ -0.26
SHMT1-205ENST00000395684 ALLCQ8N6M5 410 aa13.43□□□□□ -0.26
SHMT1-205ENST00000395684 LRRC37BQ96QE4 947 aa13.43□□□□□ -0.26
SHMT1-205ENST00000395684 SENP7Q9BQF6 1050 aa13.43□□□□□ -0.26
SHMT1-205ENST00000395684 TXLNGQ9NUQ3 528 aa13.43□□□□□ -0.26
SHMT1-205ENST00000395684 HAO1Q9UJM8 370 aa13.43□□□□□ -0.26
SHMT1-205ENST00000395684 IVNS1ABPQ9Y6Y0 642 aa13.43□□□□□ -0.26
SHMT1-205ENST00000395684 NFASCO94856 1347 aa13.43□□□□□ -0.26
SHMT1-205ENST00000395684 WDR46O15213 610 aaKnown RBP13.43□□□□□ -0.26
SHMT1-205ENST00000395684 EDF1O60869 148 aaKnown RBP13.43□□□□□ -0.26
SHMT1-205ENST00000395684 T-ENOLP0DO92 83 aa13.43□□□□□ -0.26
SHMT1-205ENST00000395684 ATP2A2P16615 1042 aaKnown RBP13.43□□□□□ -0.26
SHMT1-205ENST00000395684 LIG4P49917 911 aa13.43□□□□□ -0.26
SHMT1-205ENST00000395684 LMNB2Q03252 620 aa13.43□□□□□ -0.26
SHMT1-205ENST00000395684 ZNF252P-AS1Q0IIN9 211 aa13.43□□□□□ -0.26
SHMT1-205ENST00000395684 PDK4Q16654 411 aa13.43□□□□□ -0.26
SHMT1-205ENST00000395684 EAPPQ56P03 285 aaPredicted RBP13.43□□□□□ -0.26
SHMT1-205ENST00000395684 ZFYVE27Q5T4F4 411 aa13.43□□□□□ -0.26
SHMT1-205ENST00000395684 TXNRD3NBQ6F5E7 133 aa13.43□□□□□ -0.26
SHMT1-205ENST00000395684 TRIM72Q6ZMU5 477 aa13.43□□□□□ -0.26
SHMT1-205ENST00000395684 RGS9BPQ6ZS82 235 aa13.43□□□□□ -0.26
SHMT1-205ENST00000395684 KRT27Q7Z3Y8 459 aa13.43□□□□□ -0.26
SHMT1-205ENST00000395684 NLRX1Q86UT6 975 aa13.43□□□□□ -0.26
SHMT1-205ENST00000395684 RCOR2Q8IZ40 523 aa13.43□□□□□ -0.26
SHMT1-205ENST00000395684 ZBTB45Q96K62 511 aaPredicted RBP13.43□□□□□ -0.26
SHMT1-205ENST00000395684 LRMDAQ9H2I8 198 aa13.43□□□□□ -0.26
SHMT1-205ENST00000395684 MAP3K20Q9NYL2 800 aaKnown RBP13.43□□□□□ -0.26
SHMT1-205ENST00000395684 NKX1-2Q9UD57 310 aaPredicted RBP13.43□□□□□ -0.26
SHMT1-205ENST00000395684 USH1CQ9Y6N9 552 aa13.43□□□□□ -0.26
SHMT1-205ENST00000395684 SCINQ9Y6U3 715 aa13.43□□□□□ -0.26
SHMT1-205ENST00000395684 F8VP50 259 aa13.42□□□□□ -0.26
SHMT1-205ENST00000395684 DGAT1O75907 488 aa13.42□□□□□ -0.26
SHMT1-205ENST00000395684 SLC18A1P54219 525 aa13.42□□□□□ -0.26
SHMT1-205ENST00000395684 RNASELQ05823 741 aaKnown RBP13.42□□□□□ -0.26
SHMT1-205ENST00000395684 C1QBPQ07021 282 aaKnown RBP13.42□□□□□ -0.26
SHMT1-205ENST00000395684 SETDB1Q15047 1291 aa13.42□□□□□ -0.26
SHMT1-205ENST00000395684 ANKRD20A2Q5SQ80 823 aa13.42□□□□□ -0.26
SHMT1-205ENST00000395684 ZBTB41Q5SVQ8 909 aa13.42□□□□□ -0.26
SHMT1-205ENST00000395684 ANKRD20A1Q5TYW2 823 aa13.42□□□□□ -0.26
SHMT1-205ENST00000395684 ANKRD20A3Q5VUR7 823 aa13.42□□□□□ -0.26
SHMT1-205ENST00000395684 DRICH1Q6PGQ1 229 aaPredicted RBP13.42□□□□□ -0.26
SHMT1-205ENST00000395684 ZBED8Q8IZ13 594 aa13.42□□□□□ -0.26
SHMT1-205ENST00000395684 RBBP8NLQ8NC74 664 aaPredicted RBP13.42□□□□□ -0.26
SHMT1-205ENST00000395684 CNKSR1Q969H4 720 aa13.42□□□□□ -0.26
SHMT1-205ENST00000395684 ACSF2Q96CM8 615 aaPredicted RBP13.42□□□□□ -0.26
SHMT1-205ENST00000395684 HAUS1Q96CS2 278 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms