RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 PSTPIP1O43586 416 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 TRAPPC3O43617 180 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 ARPP19P56211 112 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 SKOR1P84550 965 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 YWHAHQ04917 246 aaPredicted RBP6.88□□□□□ -1.31
SMC1A-202ENST00000375340 SPP2Q13103 211 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 SURF1Q15526 300 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 C4orf50Q6ZRC1 276 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 LRRC55Q6ZSA7 311 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 ENOSF1Q7L5Y1 443 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 FBXO36Q8NEA4 188 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 GABPB2Q8TAK5 448 aaPredicted RBP6.88□□□□□ -1.31
SMC1A-202ENST00000375340 MYL3P08590 195 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 EEF1B2P24534 225 aaKnown RBP6.88□□□□□ -1.31
SMC1A-202ENST00000375340 BAATQ14032 418 aaPredicted RBP6.88□□□□□ -1.31
SMC1A-202ENST00000375340 GOLGA7BQ2TAP0 167 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 TRIM67Q6ZTA4 783 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 DENND5BQ6ZUT9 1274 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 RAB44Q7Z6P3 723 aaPredicted RBP6.88□□□□□ -1.31
SMC1A-202ENST00000375340 PGBD4Q96DM1 585 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 KCND2Q9NZV8 630 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 CDH16O75309 829 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 BGNP21810 368 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 FNTAP49354 379 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 ELF3P78545 371 aaPredicted RBP6.88□□□□□ -1.31
SMC1A-202ENST00000375340 MROH9Q5TGP6 573 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 DPP9Q86TI2 863 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 TEX9Q8N6V9 391 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 TMEM120AQ9BXJ8 343 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 PNMA3Q9UL41 463 aa6.88□□□□□ -1.31
SMC1A-202ENST00000375340 CAMTA1Q9Y6Y1 1673 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 TCN1P20061 433 aaPredicted RBP6.87□□□□□ -1.31
SMC1A-202ENST00000375340 CNGA1P29973 690 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 SREBF1P36956 1147 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 PPP4CP60510 307 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 KRT80Q6KB66 452 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 PODNQ7Z5L7 613 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 DCLK3Q9C098 648 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 GANQ9H2C0 597 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 STAU2Q9NUL3 570 aaKnown RBP eCLIP6.87□□□□□ -1.31
SMC1A-202ENST00000375340 DLGAP2Q9P1A6 1054 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 PCDHAC2Q9Y5I4 1007 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 MED1Q15648 1581 aaPredicted RBP6.87□□□□□ -1.31
SMC1A-202ENST00000375340 DNAJC6O75061 913 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 TTC4O95801 387 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 OATP04181 439 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 BCAR1P56945 870 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 CUL2Q13617 745 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 HHIPL2Q6UWX4 724 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 LCA5Q86VQ0 697 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 SLC25A41Q8N5S1 370 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 ARMC2Q8NEN0 867 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 FEZF2Q8TBJ5 459 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 SKA2Q8WVK7 121 aaPredicted RBP6.87□□□□□ -1.31
SMC1A-202ENST00000375340 LRRC4Q9HBW1 653 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 RAB6BQ9NRW1 208 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 ATF5Q9Y2D1 282 aaPredicted RBP6.87□□□□□ -1.31
SMC1A-202ENST00000375340 SEC24DO94855 1032 aaPredicted RBP6.87□□□□□ -1.31
SMC1A-202ENST00000375340 SDC4P31431 198 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 NLRP11P59045 1033 aaKnown RBP6.87□□□□□ -1.31
SMC1A-202ENST00000375340 HIC1Q14526 733 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 ACAD11Q709F0 780 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 CXorf38Q8TB03 319 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 SPATA18Q8TC71 538 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 CARD9Q9H257 536 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 L3MBTL1Q9Y468 752 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 MYH3P11055 1940 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 A8MUI8 341 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 ASAP2O43150 1006 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 MCF2P10911 925 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 TMEM62Q0P6H9 643 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 RBBP7Q16576 425 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 AMHR2Q16671 573 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 CDR2LQ86X02 465 aaPredicted RBP6.87□□□□□ -1.31
SMC1A-202ENST00000375340 TTLL6Q8N841 843 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 ZBTB10Q96DT7 871 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 KIF12Q96FN5 646 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 SGSM3Q96HU1 749 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 NSL1Q96IY1 281 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 AGAP3Q96P47 875 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 RPS6KC1Q96S38 1066 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 MTMR12Q9C0I1 747 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 IPO11Q9UI26 975 aaKnown RBP6.87□□□□□ -1.31
SMC1A-202ENST00000375340 NUB1Q9Y5A7 615 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 ZNF263O14978 683 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 FSCBQ5H9T9 825 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 ZNF720Q7Z2F6 126 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 CDKL3Q8IVW4 592 aaPredicted RBP6.87□□□□□ -1.31
SMC1A-202ENST00000375340 WDR75Q8IWA0 830 aaKnown RBP6.87□□□□□ -1.31
SMC1A-202ENST00000375340 KRT35Q92764 455 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 PWWP2AQ96N64 755 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 VCX3AQ9NNX9 186 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 TTC36A6NLP5 189 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 ATP9BO43861 1147 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 POU5F1BQ06416 359 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 NOP9Q86U38 636 aaKnown RBP6.87□□□□□ -1.31
SMC1A-202ENST00000375340 PPIL6Q8IXY8 311 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 GALNT4Q8N4A0 578 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 LRRC71Q8N4P6 559 aa6.87□□□□□ -1.31
SMC1A-202ENST00000375340 C3orf20Q8ND61 904 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms