RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 MOCS2O96007 188 aaPredicted RBP4.31□□□□□ -1.72
USH2A-202ENST00000366942 FGFR2P21802 821 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 RAD51AP2Q09MP3 1159 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 ZNF699Q32M78 642 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 C12orf60Q5U649 245 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 CHD1LQ86WJ1 897 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 BLIDQ8IZY5 108 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 SYCE1Q8N0S2 351 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 MGARPQ8TDB4 240 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 TBC1D32Q96NH3 1257 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 FAM167BQ9BTA0 163 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 MAF1Q9H063 256 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 DNAJC25Q9H1X3 360 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 TUT1Q9H6E5 874 aaKnown RBP4.31□□□□□ -1.72
USH2A-202ENST00000366942 IL23AQ9NPF7 189 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 SDAD1Q9NVU7 687 aaKnown RBP eCLIP4.31□□□□□ -1.72
USH2A-202ENST00000366942 TBC1D7Q9P0N9 293 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 NAGPAQ9UK23 515 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 DNAJC16Q9Y2G8 782 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 MICAL2O94851 1124 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 GLP2RO95838 553 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 CSF1RP07333 972 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 CBSLP0DN79 551 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 AKAP5P24588 427 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 CBSP35520 551 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 CPA2P48052 419 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 CDK8P49336 464 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 SMSP52788 366 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 BCAT1P54687 386 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 STX1BP61266 288 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 PLGLB1Q02325 96 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 UBE3AQ05086 875 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 FAXCQ5TGI0 409 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 FAM171A1Q5VUB5 890 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 RELL1Q8IUW5 271 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 GALNT15Q8N3T1 639 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 GPR156Q8NFN8 814 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 PHOSPHO2Q8TCD6 241 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 SYTL5Q8TDW5 730 aaPredicted RBP4.31□□□□□ -1.72
USH2A-202ENST00000366942 NR1H4Q96RI1 486 aaPredicted RBP4.31□□□□□ -1.72
USH2A-202ENST00000366942 ARHGAP39Q9C0H5 1083 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 ASCC2Q9H1I8 757 aaPredicted RBP4.31□□□□□ -1.72
USH2A-202ENST00000366942 C1orf115Q9H7X2 142 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 CERS4Q9HA82 394 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 GDF3Q9NR23 364 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 ALKBH4Q9NXW9 302 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 GABBR1Q9UBS5 961 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 ARMCX3Q9UH62 379 aaPredicted RBP4.31□□□□□ -1.72
USH2A-202ENST00000366942 COLEC10Q9Y6Z7 277 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP4.31□□□□□ -1.72
USH2A-202ENST00000366942 SPDYE5A6NIY4 337 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 CAPN14A8MX76 684 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 H7C0C1 242 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 KPNA3O00505 521 aaPredicted RBP4.31□□□□□ -1.72
USH2A-202ENST00000366942 TADA3O75528 432 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 ATP5OP48047 213 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 NCALDP61601 193 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 TIMM10P62072 90 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 MRPS22P82650 360 aaKnown RBP4.31□□□□□ -1.72
USH2A-202ENST00000366942 OCA2Q04671 838 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 SNTA1Q13424 505 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 EXOC3L4Q17RC7 722 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 DUOXA2Q1HG44 320 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 AARS2Q5JTZ9 985 aaKnown RBP4.31□□□□□ -1.72
USH2A-202ENST00000366942 TIGD7Q6NT04 549 aaPredicted RBP4.31□□□□□ -1.72
USH2A-202ENST00000366942 TAS2R42Q7RTR8 314 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 RNF149Q8NC42 400 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 LMX1AQ8TE12 382 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 FBF1Q8TES7 1133 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 WFIKKN2Q8TEU8 576 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 SLC22A17Q8WUG5 538 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 SDCCAG3Q96C92 435 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 LRRC2Q9BYS8 371 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 SEC31BQ9NQW1 1179 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 RIPK3Q9Y572 518 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 MORC2Q9Y6X9 1032 aaPredicted RBP4.31□□□□□ -1.72
USH2A-202ENST00000366942 MST1RQ04912 1400 aa4.31□□□□□ -1.72
USH2A-202ENST00000366942 SMIM22K7EJ46 135 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 QSOX1O00391 747 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 IGF2BP3O00425 579 aaKnown RBP eCLIP4.3□□□□□ -1.72
USH2A-202ENST00000366942 MGEA5O60502 916 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 CHRNA1P02708 482 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 GOLGA8HP0CJ92 632 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 SDC4P31431 198 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 NUDT1P36639 197 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 GPD2P43304 727 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 CYP2J2P51589 502 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 RRADP55042 308 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 ORC1Q13415 861 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 GRM3Q14832 879 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 NAALADL2Q58DX5 795 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 SWSAP1Q6NVH7 229 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 UNQ6126/PRO20091Q6UXV3 157 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 ARHGEF18Q6ZSZ5 1173 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 GAS2L3Q86XJ1 694 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 ZNF654Q8IZM8 581 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 LCORLQ8N3X6 602 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 STX19Q8N4C7 294 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 TMEM35BQ8NCS4 154 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 DEPDC1BQ8WUY9 529 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms