RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 GOLGA5Q8TBA6 731 aa17.07■□□□□ 0.32
CLN3-201ENST00000333496 PLEKHO2Q8TD55 490 aa17.07■□□□□ 0.32
CLN3-201ENST00000333496 ANKRD36BP1Q96IX9 119 aa17.07■□□□□ 0.32
CLN3-201ENST00000333496 ZNF560Q96MR9 790 aa17.07■□□□□ 0.32
CLN3-201ENST00000333496 MUTYHQ9UIF7 546 aa17.07■□□□□ 0.32
CLN3-201ENST00000333496 ITGA11Q9UKX5 1188 aa17.07■□□□□ 0.32
CLN3-201ENST00000333496 TRAF3IP3Q9Y228 551 aa17.07■□□□□ 0.32
CLN3-201ENST00000333496 USTQ9Y2C2 406 aa17.07■□□□□ 0.32
CLN3-201ENST00000333496 NR2E1Q9Y466 385 aa17.07■□□□□ 0.32
CLN3-201ENST00000333496 CCL16O15467 120 aa17.06■□□□□ 0.32
CLN3-201ENST00000333496 EXOC3O60645 756 aa17.06■□□□□ 0.32
CLN3-201ENST00000333496 N4BP1O75113 896 aaKnown RBP17.06■□□□□ 0.32
CLN3-201ENST00000333496 VNN2O95498 520 aa17.06■□□□□ 0.32
CLN3-201ENST00000333496 SV2CQ496J9 727 aa17.06■□□□□ 0.32
CLN3-201ENST00000333496 TPGS2Q68CL5 300 aa17.06■□□□□ 0.32
CLN3-201ENST00000333496 RNF19BQ6ZMZ0 732 aa17.06■□□□□ 0.32
CLN3-201ENST00000333496 WDR49Q8IV35 697 aa17.06■□□□□ 0.32
CLN3-201ENST00000333496 SMYD4Q8IYR2 804 aaPredicted RBP17.06■□□□□ 0.32
CLN3-201ENST00000333496 LRRC52Q8N7C0 313 aa17.06■□□□□ 0.32
CLN3-201ENST00000333496 ZNF516Q92618 1163 aa17.06■□□□□ 0.32
CLN3-201ENST00000333496 CCDC34Q96HJ3 373 aa17.06■□□□□ 0.32
CLN3-201ENST00000333496 TMEM209Q96SK2 561 aa17.06■□□□□ 0.32
CLN3-201ENST00000333496 RTP3Q9BQQ7 232 aa17.06■□□□□ 0.32
CLN3-201ENST00000333496 PIDD1Q9HB75 910 aa17.06■□□□□ 0.32
CLN3-201ENST00000333496 CLUHO75153 1309 aa17.06■□□□□ 0.32
CLN3-201ENST00000333496 ARHGEF37A1IGU5 675 aa17.05■□□□□ 0.32
CLN3-201ENST00000333496 KRT19P08727 400 aa17.05■□□□□ 0.32
CLN3-201ENST00000333496 DLATP10515 647 aaKnown RBP17.05■□□□□ 0.32
CLN3-201ENST00000333496 CPB1P15086 417 aa17.05■□□□□ 0.32
CLN3-201ENST00000333496 PNPLA4P41247 253 aa17.05■□□□□ 0.32
CLN3-201ENST00000333496 CASP4P49662 377 aa17.05■□□□□ 0.32
CLN3-201ENST00000333496 ADCY1Q08828 1119 aa17.05■□□□□ 0.32
CLN3-201ENST00000333496 DUOXA2Q1HG44 320 aa17.05■□□□□ 0.32
CLN3-201ENST00000333496 WSCD1Q658N2 575 aa17.05■□□□□ 0.32
CLN3-201ENST00000333496 RTL10Q7L3V2 364 aa17.05■□□□□ 0.32
CLN3-201ENST00000333496 TCEAL8Q8IYN2 117 aa17.05■□□□□ 0.32
CLN3-201ENST00000333496 GUF1Q8N442 669 aaKnown RBP17.05■□□□□ 0.32
CLN3-201ENST00000333496 OR10T2Q8NGX3 314 aa17.05■□□□□ 0.32
CLN3-201ENST00000333496 CCDC127Q96BQ5 260 aa17.05■□□□□ 0.32
CLN3-201ENST00000333496 CGRRF1Q99675 332 aa17.05■□□□□ 0.32
CLN3-201ENST00000333496 OXCT2Q9BYC2 517 aaPredicted RBP17.05■□□□□ 0.32
CLN3-201ENST00000333496 AFF4Q9UHB7 1163 aaKnown RBP17.05■□□□□ 0.32
CLN3-201ENST00000333496 PCDHA5Q9Y5H7 936 aa17.05■□□□□ 0.32
CLN3-201ENST00000333496 OR6C75A6NL08 312 aa17.04■□□□□ 0.32
CLN3-201ENST00000333496 DCXO43602 365 aa17.04■□□□□ 0.32
CLN3-201ENST00000333496 TNNC2P02585 160 aa17.04■□□□□ 0.32
CLN3-201ENST00000333496 NR3C1P04150 777 aa17.04■□□□□ 0.32
CLN3-201ENST00000333496 TNNI1P19237 187 aa17.04■□□□□ 0.32
CLN3-201ENST00000333496 NTHL1P78549 312 aa17.04■□□□□ 0.32
CLN3-201ENST00000333496 RBP5P82980 135 aa17.04■□□□□ 0.32
CLN3-201ENST00000333496 TRAPPC11Q7Z392 1133 aa17.04■□□□□ 0.32
CLN3-201ENST00000333496 GRASPQ7Z6J2 395 aaPredicted RBP17.04■□□□□ 0.32
CLN3-201ENST00000333496 TDRD5Q8NAT2 981 aaKnown RBP17.04■□□□□ 0.32
CLN3-201ENST00000333496 FNBP1Q96RU3 617 aa17.04■□□□□ 0.32
CLN3-201ENST00000333496 CRISPLD1Q9H336 500 aa17.04■□□□□ 0.32
CLN3-201ENST00000333496 CYP4F11Q9HBI6 524 aa17.04■□□□□ 0.32
CLN3-201ENST00000333496 C11orf16Q9NQ32 467 aa17.04■□□□□ 0.32
CLN3-201ENST00000333496 HCFC1R1Q9NWW0 138 aa17.04■□□□□ 0.32
CLN3-201ENST00000333496 KIF20AO95235 890 aa17.03■□□□□ 0.32
CLN3-201ENST00000333496 CST3P01034 146 aaPredicted RBP17.03■□□□□ 0.32
CLN3-201ENST00000333496 POU2F2P09086 479 aa17.03■□□□□ 0.32
CLN3-201ENST00000333496 ELF1P32519 619 aa17.03■□□□□ 0.32
CLN3-201ENST00000333496 GPR17Q13304 367 aa17.03■□□□□ 0.32
CLN3-201ENST00000333496 MYBPC2Q14324 1141 aa17.03■□□□□ 0.32
CLN3-201ENST00000333496 NFIL3Q16649 462 aa17.03■□□□□ 0.32
CLN3-201ENST00000333496 ELOA2Q8IYF1 753 aaPredicted RBP17.03■□□□□ 0.32
CLN3-201ENST00000333496 ZDHHC14Q8IZN3 488 aa17.03■□□□□ 0.32
CLN3-201ENST00000333496 PARD3BQ8TEW8 1205 aa17.03■□□□□ 0.32
CLN3-201ENST00000333496 PGLYRP2Q96PD5 576 aa17.03■□□□□ 0.32
CLN3-201ENST00000333496 GSDMAQ96QA5 445 aa17.03■□□□□ 0.32
CLN3-201ENST00000333496 GDAP2Q9NXN4 497 aa17.03■□□□□ 0.32
CLN3-201ENST00000333496 DNMT3BQ9UBC3 853 aaKnown RBP17.03■□□□□ 0.32
CLN3-201ENST00000333496 DSEQ9UL01 958 aa17.03■□□□□ 0.32
CLN3-201ENST00000333496 L1RE1Q9UN81 338 aa17.03■□□□□ 0.32
CLN3-201ENST00000333496 TECTAO75443 2155 aa17.03■□□□□ 0.32
CLN3-201ENST00000333496 PRRG1O14668 218 aa17.03■□□□□ 0.32
CLN3-201ENST00000333496 CALUO43852 315 aaPredicted RBP17.03■□□□□ 0.32
CLN3-201ENST00000333496 ALADP13716 330 aa17.03■□□□□ 0.32
CLN3-201ENST00000333496 BFSP1Q12934 665 aa17.03■□□□□ 0.32
CLN3-201ENST00000333496 ZCWPW2Q504Y3 356 aa17.03■□□□□ 0.32
CLN3-201ENST00000333496 ZNF658Q5TYW1 1059 aaPredicted RBP17.03■□□□□ 0.32
CLN3-201ENST00000333496 PLCD3Q8N3E9 789 aa17.03■□□□□ 0.32
CLN3-201ENST00000333496 PDCL2Q8N4E4 241 aa17.03■□□□□ 0.32
CLN3-201ENST00000333496 MYADMQ96S97 322 aa17.03■□□□□ 0.32
CLN3-201ENST00000333496 POLIQ9UNA4 740 aa17.03■□□□□ 0.32
CLN3-201ENST00000333496 INSL5Q9Y5Q6 135 aa17.03■□□□□ 0.32
CLN3-201ENST00000333496 LRRIQ3A6PVS8 624 aaPredicted RBP17.02■□□□□ 0.31
CLN3-201ENST00000333496 XYLBO75191 536 aa17.02■□□□□ 0.31
CLN3-201ENST00000333496 PRPF40AO75400 957 aaKnown RBP17.02■□□□□ 0.31
CLN3-201ENST00000333496 PRCPP42785 496 aa17.02■□□□□ 0.31
CLN3-201ENST00000333496 DLG4P78352 724 aa17.02■□□□□ 0.31
CLN3-201ENST00000333496 CLDN10P78369 228 aa17.02■□□□□ 0.31
CLN3-201ENST00000333496 OTOP3Q7RTS5 596 aa17.02■□□□□ 0.31
CLN3-201ENST00000333496 LRRTM3Q86VH5 581 aa17.02■□□□□ 0.31
CLN3-201ENST00000333496 METTL23Q86XA0 190 aa17.02■□□□□ 0.31
CLN3-201ENST00000333496 SMARCE1Q969G3 411 aa17.02■□□□□ 0.31
CLN3-201ENST00000333496 ACSF2Q96CM8 615 aaPredicted RBP17.02■□□□□ 0.31
CLN3-201ENST00000333496 HPDLQ96IR7 371 aa17.02■□□□□ 0.31
CLN3-201ENST00000333496 ZCWPW1Q9H0M4 648 aa17.02■□□□□ 0.31
CLN3-201ENST00000333496 RMND1Q9NWS8 449 aa17.02■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms