RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 SCN9AQ15858 1988 aa14.22□□□□□ -0.13
SKA3-202ENST00000314759 ALDH1B1P30837 517 aa14.21□□□□□ -0.13
SKA3-202ENST00000314759 FKBP1AP62942 108 aaKnown RBP14.21□□□□□ -0.13
SKA3-202ENST00000314759 MAMLD1Q13495 774 aa14.21□□□□□ -0.13
SKA3-202ENST00000314759 ATP13A4Q4VNC1 1196 aa14.21□□□□□ -0.13
SKA3-202ENST00000314759 TMEM154Q6P9G4 183 aa14.21□□□□□ -0.13
SKA3-202ENST00000314759 ENOSF1Q7L5Y1 443 aa14.21□□□□□ -0.13
SKA3-202ENST00000314759 LARGE2Q8N3Y3 721 aa14.21□□□□□ -0.13
SKA3-202ENST00000314759 LRRC8CQ8TDW0 803 aa14.21□□□□□ -0.13
SKA3-202ENST00000314759 ASAP3Q8TDY4 903 aa14.21□□□□□ -0.13
SKA3-202ENST00000314759 TEKT4Q8WW24 435 aa14.21□□□□□ -0.13
SKA3-202ENST00000314759 ANKRD27Q96NW4 1050 aa14.21□□□□□ -0.13
SKA3-202ENST00000314759 SMC6Q96SB8 1091 aa14.21□□□□□ -0.13
SKA3-202ENST00000314759 C11orf70Q9BRQ4 267 aa14.21□□□□□ -0.13
SKA3-202ENST00000314759 DENND2DQ9H6A0 471 aaPredicted RBP14.21□□□□□ -0.13
SKA3-202ENST00000314759 KLHL11Q9NVR0 708 aa14.21□□□□□ -0.13
SKA3-202ENST00000314759 A0A1W2PPM1 405 aa14.21□□□□□ -0.13
SKA3-202ENST00000314759 LRRD1A4D1F6 860 aa14.21□□□□□ -0.13
SKA3-202ENST00000314759 DNALI1O14645 258 aaPredicted RBP14.21□□□□□ -0.13
SKA3-202ENST00000314759 ECE2O60344 883 aa14.21□□□□□ -0.13
SKA3-202ENST00000314759 KRT10P13645 584 aa14.21□□□□□ -0.13
SKA3-202ENST00000314759 ETS1P14921 441 aa14.21□□□□□ -0.13
SKA3-202ENST00000314759 CA4P22748 312 aa14.21□□□□□ -0.13
SKA3-202ENST00000314759 ALDH3A1P30838 453 aa14.21□□□□□ -0.13
SKA3-202ENST00000314759 SSR1P43307 286 aaKnown RBP14.21□□□□□ -0.13
SKA3-202ENST00000314759 MRPS9P82933 396 aaKnown RBP14.21□□□□□ -0.13
SKA3-202ENST00000314759 CCDC142Q17RM4 750 aa14.21□□□□□ -0.13
SKA3-202ENST00000314759 XKR9Q5GH70 373 aa14.21□□□□□ -0.13
SKA3-202ENST00000314759 CWF19L1Q69YN2 538 aaKnown RBP14.21□□□□□ -0.13
SKA3-202ENST00000314759 PASD1Q8IV76 773 aa14.21□□□□□ -0.13
SKA3-202ENST00000314759 EXD1Q8NHP7 514 aa14.21□□□□□ -0.13
SKA3-202ENST00000314759 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.21□□□□□ -0.13
SKA3-202ENST00000314759 UCMAQ8WVF2 138 aa14.21□□□□□ -0.13
SKA3-202ENST00000314759 ZNF516Q92618 1163 aa14.21□□□□□ -0.13
SKA3-202ENST00000314759 MRRFQ96E11 262 aaKnown RBP14.21□□□□□ -0.13
SKA3-202ENST00000314759 TIPINQ9BVW5 301 aa14.21□□□□□ -0.13
SKA3-202ENST00000314759 TMX4Q9H1E5 349 aaPredicted RBP14.21□□□□□ -0.13
SKA3-202ENST00000314759 SMG5Q9UPR3 1016 aaKnown RBP14.21□□□□□ -0.13
SKA3-202ENST00000314759 ANKRD31Q8N7Z5 1873 aa14.21□□□□□ -0.13
SKA3-202ENST00000314759 PI4K2BG5E9Z4 385 aa14.21□□□□□ -0.14
SKA3-202ENST00000314759 NFIBO00712 420 aa14.21□□□□□ -0.14
SKA3-202ENST00000314759 LIASO43766 372 aa14.21□□□□□ -0.14
SKA3-202ENST00000314759 SSTR3P32745 418 aaPredicted RBP14.21□□□□□ -0.14
SKA3-202ENST00000314759 RNF220Q5VTB9 566 aa14.21□□□□□ -0.14
SKA3-202ENST00000314759 KAZNQ674X7 775 aa14.21□□□□□ -0.14
SKA3-202ENST00000314759 ZNF677Q86XU0 584 aa14.21□□□□□ -0.14
SKA3-202ENST00000314759 C4orf19Q8IY42 314 aa14.21□□□□□ -0.14
SKA3-202ENST00000314759 PHC3Q8NDX5 983 aa14.21□□□□□ -0.14
SKA3-202ENST00000314759 BSNDQ8WZ55 320 aa14.21□□□□□ -0.14
SKA3-202ENST00000314759 ZCWPW1Q9H0M4 648 aa14.21□□□□□ -0.14
SKA3-202ENST00000314759 DEFB129Q9H1M3 183 aa14.21□□□□□ -0.14
SKA3-202ENST00000314759 C1orf112Q9NSG2 853 aa14.21□□□□□ -0.14
SKA3-202ENST00000314759 TYROBPO43914 113 aa14.2□□□□□ -0.14
SKA3-202ENST00000314759 RFC5P40937 340 aa14.2□□□□□ -0.14
SKA3-202ENST00000314759 SOX10P56693 466 aa14.2□□□□□ -0.14
SKA3-202ENST00000314759 NFX1Q12986 1120 aaKnown RBP14.2□□□□□ -0.14
SKA3-202ENST00000314759 DMP1Q13316 513 aaPredicted RBP14.2□□□□□ -0.14
SKA3-202ENST00000314759 MTMR1Q13613 665 aa14.2□□□□□ -0.14
SKA3-202ENST00000314759 LMBRD2Q68DH5 695 aaPredicted RBP14.2□□□□□ -0.14
SKA3-202ENST00000314759 CEP128Q6ZU80 1094 aa14.2□□□□□ -0.14
SKA3-202ENST00000314759 OTOAQ7RTW8 1153 aa14.2□□□□□ -0.14
SKA3-202ENST00000314759 LMNTD2Q8IXW0 634 aa14.2□□□□□ -0.14
SKA3-202ENST00000314759 TTC25Q96NG3 672 aa14.2□□□□□ -0.14
SKA3-202ENST00000314759 VPS37BQ9H9H4 285 aa14.2□□□□□ -0.14
SKA3-202ENST00000314759 CYLDQ9NQC7 956 aa14.2□□□□□ -0.14
SKA3-202ENST00000314759 HERC5Q9UII4 1024 aaKnown RBP14.2□□□□□ -0.14
SKA3-202ENST00000314759 ZNF148Q9UQR1 794 aa14.2□□□□□ -0.14
SKA3-202ENST00000314759 C2CD2Q9Y426 696 aa14.2□□□□□ -0.14
SKA3-202ENST00000314759 UBIAD1Q9Y5Z9 338 aa14.2□□□□□ -0.14
SKA3-202ENST00000314759 NUMBLQ9Y6R0 609 aa14.2□□□□□ -0.14
SKA3-202ENST00000314759 E7ENQ6 273 aa14.2□□□□□ -0.14
SKA3-202ENST00000314759 TCF4P15884 667 aa14.2□□□□□ -0.14
SKA3-202ENST00000314759 ARSEP51690 589 aa14.2□□□□□ -0.14
SKA3-202ENST00000314759 SESN3P58005 492 aa14.2□□□□□ -0.14
SKA3-202ENST00000314759 TAF1BQ53T94 588 aaPredicted RBP14.2□□□□□ -0.14
SKA3-202ENST00000314759 NIPA1Q7RTP0 329 aa14.2□□□□□ -0.14
SKA3-202ENST00000314759 USP37Q86T82 979 aa14.2□□□□□ -0.14
SKA3-202ENST00000314759 ENDOVQ8N8Q3 282 aaKnown RBP14.2□□□□□ -0.14
SKA3-202ENST00000314759 DNAJC9Q8WXX5 260 aa14.2□□□□□ -0.14
SKA3-202ENST00000314759 MAK16Q9BXY0 300 aaKnown RBP14.2□□□□□ -0.14
SKA3-202ENST00000314759 KMT5AQ9NQR1 393 aa14.2□□□□□ -0.14
SKA3-202ENST00000314759 DLGAP2Q9P1A6 1054 aa14.2□□□□□ -0.14
SKA3-202ENST00000314759 TRAFD1O14545 582 aaPredicted RBP14.19□□□□□ -0.14
SKA3-202ENST00000314759 ZC3H11AO75152 810 aaKnown RBP eCLIP14.19□□□□□ -0.14
SKA3-202ENST00000314759 MRPS35P82673 323 aaKnown RBP14.19□□□□□ -0.14
SKA3-202ENST00000314759 LMNB2Q03252 620 aa14.19□□□□□ -0.14
SKA3-202ENST00000314759 GPS1Q13098 491 aa14.19□□□□□ -0.14
SKA3-202ENST00000314759 PLEKHG4Q58EX7 1191 aa14.19□□□□□ -0.14
SKA3-202ENST00000314759 PPP1R15BQ5SWA1 713 aa14.19□□□□□ -0.14
SKA3-202ENST00000314759 CC2D2BQ6DHV5 1058 aa14.19□□□□□ -0.14
SKA3-202ENST00000314759 RFWD3Q6PCD5 774 aa14.19□□□□□ -0.14
SKA3-202ENST00000314759 C15orf39Q6ZRI6 1047 aa14.19□□□□□ -0.14
SKA3-202ENST00000314759 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP14.19□□□□□ -0.14
SKA3-202ENST00000314759 ZNF75CPQ92670 426 aaPredicted RBP14.19□□□□□ -0.14
SKA3-202ENST00000314759 FAM213AQ9BRX8 229 aa14.19□□□□□ -0.14
SKA3-202ENST00000314759 SENP1Q9P0U3 644 aa14.19□□□□□ -0.14
SKA3-202ENST00000314759 USP21Q9UK80 565 aa14.19□□□□□ -0.14
SKA3-202ENST00000314759 CCPG1Q9ULG6 757 aa14.19□□□□□ -0.14
SKA3-202ENST00000314759 ASB3Q9Y575 518 aa14.19□□□□□ -0.14
SKA3-202ENST00000314759 TCP10L2B9ZVM9 353 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms