RNA–Protein interactions for RNA: ENST00000311943.11

SCFD1-201, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 2,016 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-201ENST00000311943 TRAPPC3O43617 180 aa12.98□□□□□ -0.33
SCFD1-201ENST00000311943 C4BPAP04003 597 aaKnown RBP12.98□□□□□ -0.33
SCFD1-201ENST00000311943 C8AP07357 584 aa12.98□□□□□ -0.33
SCFD1-201ENST00000311943 GCLMP48507 274 aa12.98□□□□□ -0.33
SCFD1-201ENST00000311943 ADCY1Q08828 1119 aa12.98□□□□□ -0.33
SCFD1-201ENST00000311943 ORC1Q13415 861 aa12.98□□□□□ -0.33
SCFD1-201ENST00000311943 SMAD4Q13485 552 aaKnown RBP12.98□□□□□ -0.33
SCFD1-201ENST00000311943 RAB33AQ14088 237 aa12.98□□□□□ -0.33
SCFD1-201ENST00000311943 CBX2Q14781 532 aaPredicted RBP12.98□□□□□ -0.33
SCFD1-201ENST00000311943 OVOS1Q6IE37 1185 aa12.98□□□□□ -0.33
SCFD1-201ENST00000311943 CENPPQ6IPU0 288 aa12.98□□□□□ -0.33
SCFD1-201ENST00000311943 SLC8B1Q6J4K2 584 aa12.98□□□□□ -0.33
SCFD1-201ENST00000311943 ANKS3Q6ZW76 656 aa12.98□□□□□ -0.33
SCFD1-201ENST00000311943 WDR49Q8IV35 697 aa12.98□□□□□ -0.33
SCFD1-201ENST00000311943 PDCL2Q8N4E4 241 aa12.98□□□□□ -0.33
SCFD1-201ENST00000311943 GPR152Q8TDT2 470 aa12.98□□□□□ -0.33
SCFD1-201ENST00000311943 FNBP1Q96RU3 617 aa12.98□□□□□ -0.33
SCFD1-201ENST00000311943 FBXW11Q9UKB1 542 aa12.98□□□□□ -0.33
SCFD1-201ENST00000311943 WDFY4Q6ZS81 3184 aa12.97□□□□□ -0.33
SCFD1-201ENST00000311943 ZP2Q05996 745 aa12.97□□□□□ -0.33
SCFD1-201ENST00000311943 ELAVL2Q12926 359 aaKnown RBP12.97□□□□□ -0.33
SCFD1-201ENST00000311943 BMS1Q14692 1282 aaKnown RBP12.97□□□□□ -0.33
SCFD1-201ENST00000311943 DUOXA2Q1HG44 320 aa12.97□□□□□ -0.33
SCFD1-201ENST00000311943 GRASPQ7Z6J2 395 aaPredicted RBP12.97□□□□□ -0.33
SCFD1-201ENST00000311943 SLC9A9Q8IVB4 645 aa12.97□□□□□ -0.33
SCFD1-201ENST00000311943 HPDLQ96IR7 371 aa12.97□□□□□ -0.33
SCFD1-201ENST00000311943 MRPL45Q9BRJ2 306 aaKnown RBP12.97□□□□□ -0.33
SCFD1-201ENST00000311943 SDCBP2Q9H190 292 aa12.97□□□□□ -0.33
SCFD1-201ENST00000311943 XYLT2Q9H1B5 865 aa12.97□□□□□ -0.33
SCFD1-201ENST00000311943 KIAA1468Q9P260 1216 aa12.97□□□□□ -0.33
SCFD1-201ENST00000311943 NXF1Q9UBU9 619 aaKnown RBP12.97□□□□□ -0.33
SCFD1-201ENST00000311943 SYN3O14994 580 aa12.96□□□□□ -0.33
SCFD1-201ENST00000311943 XPOTO43592 962 aaKnown RBP12.96□□□□□ -0.33
SCFD1-201ENST00000311943 CALUO43852 315 aaPredicted RBP12.96□□□□□ -0.33
SCFD1-201ENST00000311943 OAZ2O95190 189 aa12.96□□□□□ -0.33
SCFD1-201ENST00000311943 SMC2O95347 1197 aa12.96□□□□□ -0.33
SCFD1-201ENST00000311943 CPB1P15086 417 aa12.96□□□□□ -0.33
SCFD1-201ENST00000311943 GJA1P17302 382 aa12.96□□□□□ -0.33
SCFD1-201ENST00000311943 GPR15P49685 360 aa12.96□□□□□ -0.33
SCFD1-201ENST00000311943 PSMC1P62191 440 aaKnown RBP12.96□□□□□ -0.33
SCFD1-201ENST00000311943 DPCR1Q3MIW9 517 aa12.96□□□□□ -0.33
SCFD1-201ENST00000311943 HSP90AA4PQ58FG1 418 aa12.96□□□□□ -0.33
SCFD1-201ENST00000311943 SDHAF4Q5VUM1 108 aa12.96□□□□□ -0.33
SCFD1-201ENST00000311943 SCARA5Q6ZMJ2 495 aa12.96□□□□□ -0.33
SCFD1-201ENST00000311943 SV2AQ7L0J3 742 aa12.96□□□□□ -0.33
SCFD1-201ENST00000311943 GPIHBP1Q8IV16 184 aa12.96□□□□□ -0.33
SCFD1-201ENST00000311943 KBTBD7Q8WVZ9 684 aa12.96□□□□□ -0.33
SCFD1-201ENST00000311943 NELFBQ8WX92 580 aa12.96□□□□□ -0.33
SCFD1-201ENST00000311943 CCDC47Q96A33 483 aaKnown RBP12.96□□□□□ -0.33
SCFD1-201ENST00000311943 ANKRD36BP1Q96IX9 119 aa12.96□□□□□ -0.33
SCFD1-201ENST00000311943 CLSTN2Q9H4D0 955 aa12.96□□□□□ -0.33
SCFD1-201ENST00000311943 CYP4F11Q9HBI6 524 aa12.96□□□□□ -0.33
SCFD1-201ENST00000311943 BACE2Q9Y5Z0 518 aa12.96□□□□□ -0.33
SCFD1-201ENST00000311943 MTCL1Q9Y4B5 1905 aaKnown RBP12.96□□□□□ -0.33
SCFD1-201ENST00000311943 NCK2O43639 380 aa12.96□□□□□ -0.34
SCFD1-201ENST00000311943 ABLIM3O94929 683 aa12.96□□□□□ -0.34
SCFD1-201ENST00000311943 TNNC2P02585 160 aa12.96□□□□□ -0.34
SCFD1-201ENST00000311943 PDGFRBP09619 1106 aa12.96□□□□□ -0.34
SCFD1-201ENST00000311943 VAMP7P51809 220 aa12.96□□□□□ -0.34
SCFD1-201ENST00000311943 DUSP4Q13115 394 aa12.96□□□□□ -0.34
SCFD1-201ENST00000311943 BIRC3Q13489 604 aa12.96□□□□□ -0.34
SCFD1-201ENST00000311943 AAK1Q2M2I8 961 aa12.96□□□□□ -0.34
SCFD1-201ENST00000311943 TTI2Q6NXR4 508 aa12.96□□□□□ -0.34
SCFD1-201ENST00000311943 GPR149Q86SP6 731 aa12.96□□□□□ -0.34
SCFD1-201ENST00000311943 FAM186BQ8IYM0 893 aa12.96□□□□□ -0.34
SCFD1-201ENST00000311943 HS6ST3Q8IZP7 471 aa12.96□□□□□ -0.34
SCFD1-201ENST00000311943 ZNF461Q8TAF7 563 aa12.96□□□□□ -0.34
SCFD1-201ENST00000311943 TAS1R2Q8TE23 839 aa12.96□□□□□ -0.34
SCFD1-201ENST00000311943 SEMA4DQ92854 862 aa12.96□□□□□ -0.34
SCFD1-201ENST00000311943 DPEP3Q9H4B8 488 aa12.96□□□□□ -0.34
SCFD1-201ENST00000311943 SMYD3Q9H7B4 428 aa12.96□□□□□ -0.34
SCFD1-201ENST00000311943 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.96□□□□□ -0.34
SCFD1-201ENST00000311943 RMND1Q9NWS8 449 aa12.96□□□□□ -0.34
SCFD1-201ENST00000311943 ITGA11Q9UKX5 1188 aa12.96□□□□□ -0.34
SCFD1-201ENST00000311943 NOTCH4Q99466 2003 aa12.96□□□□□ -0.34
SCFD1-201ENST00000311943 C2CD4DB7Z1M9 353 aa12.95□□□□□ -0.34
SCFD1-201ENST00000311943 ZMYND10O75800 440 aa12.95□□□□□ -0.34
SCFD1-201ENST00000311943 ASGR2P07307 311 aa12.95□□□□□ -0.34
SCFD1-201ENST00000311943 SSTR3P32745 418 aaPredicted RBP12.95□□□□□ -0.34
SCFD1-201ENST00000311943 RBP5P82980 135 aa12.95□□□□□ -0.34
SCFD1-201ENST00000311943 WDR72Q3MJ13 1102 aa12.95□□□□□ -0.34
SCFD1-201ENST00000311943 CBWD6Q4V339 395 aa12.95□□□□□ -0.34
SCFD1-201ENST00000311943 SLC39A12Q504Y0 691 aa12.95□□□□□ -0.34
SCFD1-201ENST00000311943 CBWD3Q5JTY5 395 aa12.95□□□□□ -0.34
SCFD1-201ENST00000311943 CBWD5Q5RIA9 395 aa12.95□□□□□ -0.34
SCFD1-201ENST00000311943 ZNF280DQ6N043 979 aa12.95□□□□□ -0.34
SCFD1-201ENST00000311943 RSAD2Q8WXG1 361 aa12.95□□□□□ -0.34
SCFD1-201ENST00000311943 SMG7Q92540 1137 aaKnown RBP12.95□□□□□ -0.34
SCFD1-201ENST00000311943 APOBEC3GQ9HC16 384 aaKnown RBP12.95□□□□□ -0.34
SCFD1-201ENST00000311943 KIAA1586Q9HCI6 787 aa12.95□□□□□ -0.34
SCFD1-201ENST00000311943 CEP72Q9P209 647 aa12.95□□□□□ -0.34
SCFD1-201ENST00000311943 DNMT3BQ9UBC3 853 aaKnown RBP12.95□□□□□ -0.34
SCFD1-201ENST00000311943 HMGXB4Q9UGU5 601 aa12.95□□□□□ -0.34
SCFD1-201ENST00000311943 GTF3C4Q9UKN8 822 aa12.95□□□□□ -0.34
SCFD1-201ENST00000311943 SSX2IPQ9Y2D8 614 aa12.95□□□□□ -0.34
SCFD1-201ENST00000311943 MYBPHLA2RUH7 354 aa12.95□□□□□ -0.34
SCFD1-201ENST00000311943 KIAA0391O15091 583 aaKnown RBP12.95□□□□□ -0.34
SCFD1-201ENST00000311943 ODC1P11926 461 aa12.95□□□□□ -0.34
SCFD1-201ENST00000311943 CCR2P41597 374 aa12.95□□□□□ -0.34
SCFD1-201ENST00000311943 CLDN10P78369 228 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms