RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 NT5C1BQ96P26 610 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 RANBP17Q9H2T7 1088 aaKnown RBP6.72□□□□□ -1.33
VPS35-201ENST00000299138 ST6GALNAC4Q9H4F1 302 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 KANSL2Q9H9L4 492 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 PAPOLBQ9NRJ5 636 aaKnown RBP6.72□□□□□ -1.33
VPS35-201ENST00000299138 NYAP2Q9P242 653 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 RREB1Q92766 1687 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 FSCN2O14926 492 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 ZNF185O15231 689 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 PRPF4O43172 522 aaKnown RBP eCLIP6.72□□□□□ -1.33
VPS35-201ENST00000299138 PRKAB2O43741 272 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 EIF2S1P05198 315 aaKnown RBP6.72□□□□□ -1.33
VPS35-201ENST00000299138 UBTFL6P0CB48 400 aaPredicted RBP6.72□□□□□ -1.33
VPS35-201ENST00000299138 NCALDP61601 193 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 SP4Q02446 784 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 TEDDM1Q5T9Z0 273 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 TTBK2Q6IQ55 1244 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 XRRA1Q6P2D8 792 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 SCYL2Q6P3W7 929 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 POTEAQ6S8J7 498 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 TMEM126BQ8IUX1 230 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 ADGRA3Q8IWK6 1321 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 TMC2Q8TDI7 906 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 SLC35C1Q96A29 364 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 TGS1Q96RS0 853 aaKnown RBP6.72□□□□□ -1.33
VPS35-201ENST00000299138 NUDCD1Q96RS6 583 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 AGPAT1Q99943 283 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 VPS11Q9H270 941 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 RPAP3Q9H6T3 665 aaPredicted RBP6.72□□□□□ -1.33
VPS35-201ENST00000299138 ZBTB1Q9Y2K1 713 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 PPP2R3BQ9Y5P8 575 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 GRXCR2A6NFK2 248 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 XPO1O14980 1071 aaKnown RBP6.72□□□□□ -1.33
VPS35-201ENST00000299138 STRNO43815 780 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 COILP38432 576 aaPredicted RBP6.72□□□□□ -1.33
VPS35-201ENST00000299138 PRPSAP1Q14558 356 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 Q4G0T1 1027 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 LRRC8BQ6P9F7 803 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 TRIM69Q86WT6 500 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 CLMNQ96JQ2 1002 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 MAP3K20Q9NYL2 800 aaKnown RBP6.72□□□□□ -1.33
VPS35-201ENST00000299138 PPARGC1AQ9UBK2 798 aaKnown RBP6.72□□□□□ -1.33
VPS35-201ENST00000299138 POLIQ9UNA4 740 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 L3MBTL1Q9Y468 752 aa6.72□□□□□ -1.33
VPS35-201ENST00000299138 GNPATO15228 680 aa6.71□□□□□ -1.33
VPS35-201ENST00000299138 KRT37O76014 449 aa6.71□□□□□ -1.33
VPS35-201ENST00000299138 BCAMP50895 628 aa6.71□□□□□ -1.33
VPS35-201ENST00000299138 YWHAHQ04917 246 aaPredicted RBP6.71□□□□□ -1.33
VPS35-201ENST00000299138 LLGL2Q6P1M3 1020 aa6.71□□□□□ -1.33
VPS35-201ENST00000299138 KRT27Q7Z3Y8 459 aa6.71□□□□□ -1.33
VPS35-201ENST00000299138 PATL1Q86TB9 770 aaKnown RBP6.71□□□□□ -1.33
VPS35-201ENST00000299138 AGBL1Q96MI9 1066 aa6.71□□□□□ -1.33
VPS35-201ENST00000299138 FRMD4AQ9P2Q2 1039 aaPredicted RBP6.71□□□□□ -1.33
VPS35-201ENST00000299138 SEPT3Q9UH03 358 aa6.71□□□□□ -1.33
VPS35-201ENST00000299138 DNAJC12Q9UKB3 198 aa6.71□□□□□ -1.33
VPS35-201ENST00000299138 LOC102724428A0A0B4J2F2 783 aa6.71□□□□□ -1.33
VPS35-201ENST00000299138 DTNBO60941 627 aa6.71□□□□□ -1.33
VPS35-201ENST00000299138 CYP3A4P08684 503 aa6.71□□□□□ -1.33
VPS35-201ENST00000299138 SIK1P57059 783 aa6.71□□□□□ -1.33
VPS35-201ENST00000299138 SURF1Q15526 300 aa6.71□□□□□ -1.33
VPS35-201ENST00000299138 CYP4F22Q6NT55 531 aa6.71□□□□□ -1.33
VPS35-201ENST00000299138 RHOT1Q8IXI2 618 aa6.71□□□□□ -1.33
VPS35-201ENST00000299138 GPAMQ9HCL2 828 aa6.71□□□□□ -1.33
VPS35-201ENST00000299138 AMACRQ9UHK6 382 aa6.71□□□□□ -1.33
VPS35-201ENST00000299138 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.71□□□□□ -1.33
VPS35-201ENST00000299138 RIPK2O43353 540 aa6.71□□□□□ -1.34
VPS35-201ENST00000299138 NUP62P37198 522 aaPredicted RBP6.71□□□□□ -1.34
VPS35-201ENST00000299138 PRAMEP78395 509 aa6.71□□□□□ -1.34
VPS35-201ENST00000299138 C16orf72Q14CZ0 275 aa6.71□□□□□ -1.34
VPS35-201ENST00000299138 EPHA7Q15375 998 aa6.71□□□□□ -1.34
VPS35-201ENST00000299138 CNGA2Q16280 664 aa6.71□□□□□ -1.34
VPS35-201ENST00000299138 DTX3LQ8TDB6 740 aa6.71□□□□□ -1.34
VPS35-201ENST00000299138 IRGQQ8WZA9 623 aa6.71□□□□□ -1.34
VPS35-201ENST00000299138 PPP2R3CQ969Q6 453 aa6.71□□□□□ -1.34
VPS35-201ENST00000299138 ANO3Q9BYT9 981 aa6.71□□□□□ -1.34
VPS35-201ENST00000299138 TXLNGYQ9BZA5 131 aa6.71□□□□□ -1.34
VPS35-201ENST00000299138 NACA2Q9H009 215 aa6.71□□□□□ -1.34
VPS35-201ENST00000299138 RAB20Q9NX57 234 aa6.71□□□□□ -1.34
VPS35-201ENST00000299138 ADA2Q9NZK5 511 aa6.71□□□□□ -1.34
VPS35-201ENST00000299138 PSMC3IPQ9P2W1 217 aaPredicted RBP6.71□□□□□ -1.34
VPS35-201ENST00000299138 TRIM10Q9UDY6 481 aa6.71□□□□□ -1.34
VPS35-201ENST00000299138 LNPEPQ9UIQ6 1025 aa6.71□□□□□ -1.34
VPS35-201ENST00000299138 STXBP5LQ9Y2K9 1186 aa6.71□□□□□ -1.34
VPS35-201ENST00000299138 COL1A1P02452 1464 aaPredicted RBP6.71□□□□□ -1.34
VPS35-201ENST00000299138 MFN2O95140 757 aa6.71□□□□□ -1.34
VPS35-201ENST00000299138 PECAM1P16284 738 aaPredicted RBP6.71□□□□□ -1.34
VPS35-201ENST00000299138 ITGAXP20702 1163 aa6.71□□□□□ -1.34
VPS35-201ENST00000299138 EIF2S3P41091 472 aaKnown RBP6.71□□□□□ -1.34
VPS35-201ENST00000299138 MAPRE1Q15691 268 aaKnown RBP6.71□□□□□ -1.34
VPS35-201ENST00000299138 TRIM67Q6ZTA4 783 aa6.71□□□□□ -1.34
VPS35-201ENST00000299138 EPB41L1Q9H4G0 881 aa6.71□□□□□ -1.34
VPS35-201ENST00000299138 AZI2Q9H6S1 392 aa6.71□□□□□ -1.34
VPS35-201ENST00000299138 CYP4F11Q9HBI6 524 aa6.71□□□□□ -1.34
VPS35-201ENST00000299138 ZFP69BQ9UJL9 534 aa6.71□□□□□ -1.34
VPS35-201ENST00000299138 DRG1Q9Y295 367 aaKnown RBP6.71□□□□□ -1.34
VPS35-201ENST00000299138 TMEM120BA0PK00 339 aa6.71□□□□□ -1.34
VPS35-201ENST00000299138 IGF2BP3O00425 579 aaKnown RBP eCLIP6.71□□□□□ -1.34
VPS35-201ENST00000299138 TTI1O43156 1089 aa6.71□□□□□ -1.34
VPS35-201ENST00000299138 MAGEC1O60732 1142 aa6.71□□□□□ -1.34
VPS35-201ENST00000299138 NOVP48745 357 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms