RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 WEE2P0C1S8 567 aa9.13□□□□□ -0.95
PTCD3-201ENST00000254630 SERPINB9P50453 376 aa9.13□□□□□ -0.95
PTCD3-201ENST00000254630 ACTR2P61160 394 aa9.13□□□□□ -0.95
PTCD3-201ENST00000254630 NAB2Q15742 525 aa9.13□□□□□ -0.95
PTCD3-201ENST00000254630 LRIG3Q6UXM1 1119 aa9.13□□□□□ -0.95
PTCD3-201ENST00000254630 ATP6V0D2Q8N8Y2 350 aa9.13□□□□□ -0.95
PTCD3-201ENST00000254630 CPB2Q96IY4 423 aa9.13□□□□□ -0.95
PTCD3-201ENST00000254630 PI4K2AQ9BTU6 479 aa9.13□□□□□ -0.95
PTCD3-201ENST00000254630 YY1AP1Q9H869 796 aa9.13□□□□□ -0.95
PTCD3-201ENST00000254630 ADARB2Q9NS39 739 aaKnown RBP9.13□□□□□ -0.95
PTCD3-201ENST00000254630 SUFUQ9UMX1 484 aa9.13□□□□□ -0.95
PTCD3-201ENST00000254630 ATMINO43313 823 aaPredicted RBP9.13□□□□□ -0.95
PTCD3-201ENST00000254630 GALCP54803 685 aa9.13□□□□□ -0.95
PTCD3-201ENST00000254630 MTF1Q14872 753 aa9.13□□□□□ -0.95
PTCD3-201ENST00000254630 ZNF484Q5JVG2 852 aa9.13□□□□□ -0.95
PTCD3-201ENST00000254630 RNF168Q8IYW5 571 aaPredicted RBP9.13□□□□□ -0.95
PTCD3-201ENST00000254630 KCTD17Q8N5Z5 321 aa9.13□□□□□ -0.95
PTCD3-201ENST00000254630 PABPC5Q96DU9 382 aaKnown RBP9.13□□□□□ -0.95
PTCD3-201ENST00000254630 SLIT1O75093 1534 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 FAM200BP0CF97 657 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 RALBP11234 206 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 PDK1Q15118 436 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 NIF3L1Q9GZT8 377 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 SNX12Q9UMY4 172 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 PCDHGB4Q9UN71 923 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 PITPNM2Q9BZ72 1349 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 GAS2O43903 313 aaKnown RBP9.12□□□□□ -0.95
PTCD3-201ENST00000254630 CHGBP05060 677 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 CENPCQ03188 943 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 DCAF6Q58WW2 860 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 ADCK2Q7Z695 626 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 GRAMD1AQ96CP6 724 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 CYP4F11Q9HBI6 524 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 ALG13Q9NP73 1137 aaKnown RBP9.12□□□□□ -0.95
PTCD3-201ENST00000254630 PSMC3IPQ9P2W1 217 aaPredicted RBP9.12□□□□□ -0.95
PTCD3-201ENST00000254630 SLC25A13Q9UJS0 675 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 CDYLQ9Y232 598 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 ANGPT2O15123 496 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 P4HA2O15460 535 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 STAG3L1P0CL83 205 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 NCAM1P13591 858 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 ABCE1P61221 599 aaKnown RBP9.12□□□□□ -0.95
PTCD3-201ENST00000254630 WASHC5Q12768 1159 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 TMED1Q13445 227 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 USP10Q14694 798 aaKnown RBP9.12□□□□□ -0.95
PTCD3-201ENST00000254630 EDRF1Q3B7T1 1238 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 TRAPPC11Q7Z392 1133 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 GMCL1P1Q8NEA9 526 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 OTUB1Q96FW1 271 aaPredicted RBP9.12□□□□□ -0.95
PTCD3-201ENST00000254630 RUSC1Q9BVN2 902 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 ZC3H7BQ9UGR2 993 aaKnown RBP9.12□□□□□ -0.95
PTCD3-201ENST00000254630 PKP3Q9Y446 797 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 C5orf58C9J3I9 102 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 GOLGA8RI6L899 631 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 C2CD2LO14523 706 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 PFDN1O60925 122 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 APRTP07741 180 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 OCM2P0CE71 109 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 OCMP0CE72 109 aaPredicted RBP9.12□□□□□ -0.95
PTCD3-201ENST00000254630 ITIH2P19823 946 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 NR1I3Q14994 352 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 AARS2Q5JTZ9 985 aaKnown RBP9.12□□□□□ -0.95
PTCD3-201ENST00000254630 MEI1Q5TIA1 1274 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 ICA1LQ8NDH6 482 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 COG1Q8WTW3 980 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 TFB1MQ8WVM0 346 aaKnown RBP9.12□□□□□ -0.95
PTCD3-201ENST00000254630 SPATA16Q9BXB7 569 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 KLK14Q9P0G3 267 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 DEPDC5O75140 1603 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 MSH4O15457 936 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 SLC37A4O43826 429 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 CAP2P40123 477 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 ZNF200P98182 395 aaPredicted RBP9.12□□□□□ -0.95
PTCD3-201ENST00000254630 LRRC1Q9BTT6 524 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 TASP1Q9H6P5 420 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 RAB6BQ9NRW1 208 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 PCMTD2Q9NV79 361 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 ABI2Q9NYB9 513 aaPredicted RBP9.12□□□□□ -0.95
PTCD3-201ENST00000254630 PAK5Q9P286 719 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 SLC30A1Q9Y6M5 507 aa9.12□□□□□ -0.95
PTCD3-201ENST00000254630 H0Y626 953 aa9.11□□□□□ -0.95
PTCD3-201ENST00000254630 SRP72O76094 671 aaKnown RBP9.11□□□□□ -0.95
PTCD3-201ENST00000254630 LONRF1Q17RB8 773 aa9.11□□□□□ -0.95
PTCD3-201ENST00000254630 TAGAPQ8N103 731 aa9.11□□□□□ -0.95
PTCD3-201ENST00000254630 IPMKQ8NFU5 416 aa9.11□□□□□ -0.95
PTCD3-201ENST00000254630 SCUBE2Q9NQ36 999 aa9.11□□□□□ -0.95
PTCD3-201ENST00000254630 ZDHHC9Q9Y397 364 aa9.11□□□□□ -0.95
PTCD3-201ENST00000254630 NEU2Q9Y3R4 380 aa9.11□□□□□ -0.95
PTCD3-201ENST00000254630 ADGRA2Q96PE1 1338 aa9.11□□□□□ -0.95
PTCD3-201ENST00000254630 CCDC78A2IDD5 438 aa9.11□□□□□ -0.95
PTCD3-201ENST00000254630 H0Y3Z8 333 aa9.11□□□□□ -0.95
PTCD3-201ENST00000254630 ENO1P06733 434 aaKnown RBP9.11□□□□□ -0.95
PTCD3-201ENST00000254630 RPA1P27694 616 aa9.11□□□□□ -0.95
PTCD3-201ENST00000254630 SMTNL2Q2TAL5 461 aa9.11□□□□□ -0.95
PTCD3-201ENST00000254630 ZRANB3Q5FWF4 1079 aa9.11□□□□□ -0.95
PTCD3-201ENST00000254630 PATL1Q86TB9 770 aaKnown RBP9.11□□□□□ -0.95
PTCD3-201ENST00000254630 KCNV2Q8TDN2 545 aa9.11□□□□□ -0.95
PTCD3-201ENST00000254630 MYCBPQ99417 103 aaPredicted RBP9.11□□□□□ -0.95
PTCD3-201ENST00000254630 WWP1Q9H0M0 922 aa9.11□□□□□ -0.95
PTCD3-201ENST00000254630 IL10P22301 178 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms