RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 PICK1Q9NRD5 415 aa22.57■■□□□ 1.2
TRIM28-201ENST00000253024 IGF2BP3O00425 579 aaKnown RBP eCLIP22.57■■□□□ 1.2
TRIM28-201ENST00000253024 GMPSP49915 693 aaPredicted RBP22.57■■□□□ 1.2
TRIM28-201ENST00000253024 CDH8P55286 799 aa22.57■■□□□ 1.2
TRIM28-201ENST00000253024 BACE1P56817 501 aa22.57■■□□□ 1.2
TRIM28-201ENST00000253024 PKN2Q16513 984 aaKnown RBP22.57■■□□□ 1.2
TRIM28-201ENST00000253024 SAMD3Q8N6K7 520 aa22.57■■□□□ 1.2
TRIM28-201ENST00000253024 ARHGAP28Q9P2N2 729 aa22.57■■□□□ 1.2
TRIM28-201ENST00000253024 CHUKO15111 745 aa22.56■■□□□ 1.2
TRIM28-201ENST00000253024 SMAD1Q15797 465 aaKnown RBP22.56■■□□□ 1.2
TRIM28-201ENST00000253024 CLUL1Q15846 466 aa22.56■■□□□ 1.2
TRIM28-201ENST00000253024 ABRAQ8N0Z2 381 aa22.56■■□□□ 1.2
TRIM28-201ENST00000253024 CCDC33Q8N5R6 958 aa22.56■■□□□ 1.2
TRIM28-201ENST00000253024 FITM2Q8N6M3 262 aa22.56■■□□□ 1.2
TRIM28-201ENST00000253024 MCPH1Q8NEM0 835 aa22.56■■□□□ 1.2
TRIM28-201ENST00000253024 ZNF302Q9NR11 478 aa22.56■■□□□ 1.2
TRIM28-201ENST00000253024 NEU2Q9Y3R4 380 aa22.56■■□□□ 1.2
TRIM28-201ENST00000253024 USP15Q9Y4E8 981 aaPredicted RBP22.56■■□□□ 1.2
TRIM28-201ENST00000253024 A0A1W2PPM1 405 aa22.56■■□□□ 1.2
TRIM28-201ENST00000253024 PTK6Q13882 451 aa22.56■■□□□ 1.2
TRIM28-201ENST00000253024 WDR78Q5VTH9 848 aa22.56■■□□□ 1.2
TRIM28-201ENST00000253024 SLC17A8Q8NDX2 589 aa22.56■■□□□ 1.2
TRIM28-201ENST00000253024 SLC7A3Q8WY07 619 aa22.56■■□□□ 1.2
TRIM28-201ENST00000253024 STAMBPL1Q96FJ0 436 aa22.56■■□□□ 1.2
TRIM28-201ENST00000253024 TMEM237Q96Q45 408 aa22.56■■□□□ 1.2
TRIM28-201ENST00000253024 NSRP1Q9H0G5 558 aaKnown RBP22.56■■□□□ 1.2
TRIM28-201ENST00000253024 CYP39A1Q9NYL5 469 aa22.56■■□□□ 1.2
TRIM28-201ENST00000253024 NKIRAS1Q9NYS0 192 aa22.56■■□□□ 1.2
TRIM28-201ENST00000253024 ZNF214Q9UL59 606 aaPredicted RBP22.56■■□□□ 1.2
TRIM28-201ENST00000253024 ATXN2Q99700 1313 aaKnown RBP22.56■■□□□ 1.2
TRIM28-201ENST00000253024 TMEM63BQ5T3F8 832 aa22.56■■□□□ 1.2
TRIM28-201ENST00000253024 GPAT2Q6NUI2 795 aa22.56■■□□□ 1.2
TRIM28-201ENST00000253024 STMN4Q9H169 189 aaPredicted RBP22.56■■□□□ 1.2
TRIM28-201ENST00000253024 NOD2Q9HC29 1040 aa22.56■■□□□ 1.2
TRIM28-201ENST00000253024 RNF19AQ9NV58 838 aa22.56■■□□□ 1.2
TRIM28-201ENST00000253024 CENPCQ03188 943 aa22.55■■□□□ 1.2
TRIM28-201ENST00000253024 ANGEL2Q5VTE6 544 aaKnown RBP22.55■■□□□ 1.2
TRIM28-201ENST00000253024 MORC4Q8TE76 937 aa22.55■■□□□ 1.2
TRIM28-201ENST00000253024 ZNF252P-AS1Q0IIN9 211 aa22.55■■□□□ 1.2
TRIM28-201ENST00000253024 TAF5Q15542 800 aa22.55■■□□□ 1.2
TRIM28-201ENST00000253024 ZNF449Q6P9G9 518 aa22.55■■□□□ 1.2
TRIM28-201ENST00000253024 ABHD15Q6UXT9 468 aa22.55■■□□□ 1.2
TRIM28-201ENST00000253024 SPATA21Q7Z572 469 aa22.55■■□□□ 1.2
TRIM28-201ENST00000253024 C12orf50Q8NA57 414 aaPredicted RBP22.55■■□□□ 1.2
TRIM28-201ENST00000253024 KCNV2Q8TDN2 545 aa22.55■■□□□ 1.2
TRIM28-201ENST00000253024 CENPTQ96BT3 561 aa22.55■■□□□ 1.2
TRIM28-201ENST00000253024 KLHL29Q96CT2 875 aa22.55■■□□□ 1.2
TRIM28-201ENST00000253024 KDM4CQ9H3R0 1056 aa22.55■■□□□ 1.2
TRIM28-201ENST00000253024 POLIQ9UNA4 740 aa22.55■■□□□ 1.2
TRIM28-201ENST00000253024 CD48P09326 243 aa22.54■■□□□ 1.2
TRIM28-201ENST00000253024 SSTR1P30872 391 aa22.54■■□□□ 1.2
TRIM28-201ENST00000253024 ZNF280CQ8ND82 737 aa22.54■■□□□ 1.2
TRIM28-201ENST00000253024 FEZF2Q8TBJ5 459 aa22.54■■□□□ 1.2
TRIM28-201ENST00000253024 TFAP2BQ92481 460 aa22.54■■□□□ 1.2
TRIM28-201ENST00000253024 NLRP4Q96MN2 994 aa22.54■■□□□ 1.2
TRIM28-201ENST00000253024 NTPCRQ9BSD7 190 aaKnown RBP22.54■■□□□ 1.2
TRIM28-201ENST00000253024 AGTPBP1Q9UPW5 1226 aa22.54■■□□□ 1.2
TRIM28-201ENST00000253024 ASAP2O43150 1006 aa22.54■■□□□ 1.2
TRIM28-201ENST00000253024 ITGBL1O95965 494 aaPredicted RBP22.54■■□□□ 1.2
TRIM28-201ENST00000253024 CYP1A1P04798 512 aaPredicted RBP22.54■■□□□ 1.2
TRIM28-201ENST00000253024 YY1P25490 414 aa22.54■■□□□ 1.2
TRIM28-201ENST00000253024 GDF10P55107 478 aa22.54■■□□□ 1.2
TRIM28-201ENST00000253024 MGAT5Q09328 741 aa22.54■■□□□ 1.2
TRIM28-201ENST00000253024 PDIA2Q13087 525 aaKnown RBP22.54■■□□□ 1.2
TRIM28-201ENST00000253024 KLF1Q13351 362 aaPredicted RBP22.54■■□□□ 1.2
TRIM28-201ENST00000253024 CGB2Q6NT52 195 aa22.54■■□□□ 1.2
TRIM28-201ENST00000253024 DNAJC24Q6P3W2 148 aa22.54■■□□□ 1.2
TRIM28-201ENST00000253024 ARMC9Q7Z3E5 817 aa22.54■■□□□ 1.2
TRIM28-201ENST00000253024 VTI1AQ96AJ9 217 aa22.54■■□□□ 1.2
TRIM28-201ENST00000253024 BRCA2P51587 3418 aa22.54■■□□□ 1.2
TRIM28-201ENST00000253024 ATP6V1G2O95670 118 aa22.53■■□□□ 1.2
TRIM28-201ENST00000253024 ALDH5A1P51649 535 aaPredicted RBP22.53■■□□□ 1.2
TRIM28-201ENST00000253024 MYO1EQ12965 1108 aa22.53■■□□□ 1.2
TRIM28-201ENST00000253024 LY6KQ17RY6 165 aa22.53■■□□□ 1.2
TRIM28-201ENST00000253024 AGBL3Q8NEM8 1001 aa22.53■■□□□ 1.2
TRIM28-201ENST00000253024 GRK7Q8WTQ7 553 aa22.53■■□□□ 1.2
TRIM28-201ENST00000253024 PPP1R13LQ8WUF5 828 aa22.53■■□□□ 1.2
TRIM28-201ENST00000253024 KRT16P08779 473 aa22.53■■□□□ 1.2
TRIM28-201ENST00000253024 GARTP22102 1010 aa22.53■■□□□ 1.2
TRIM28-201ENST00000253024 ERFP50548 548 aa22.53■■□□□ 1.2
TRIM28-201ENST00000253024 WDR4P57081 412 aaKnown RBP22.53■■□□□ 1.2
TRIM28-201ENST00000253024 PSMD6Q15008 389 aa22.53■■□□□ 1.2
TRIM28-201ENST00000253024 RAB6CQ53S08 254 aa22.53■■□□□ 1.2
TRIM28-201ENST00000253024 CCDC89Q8N998 374 aa22.53■■□□□ 1.2
TRIM28-201ENST00000253024 PRPF31Q8WWY3 499 aaKnown RBP22.53■■□□□ 1.2
TRIM28-201ENST00000253024 SERPINB12Q96P63 405 aa22.53■■□□□ 1.2
TRIM28-201ENST00000253024 PITPNM3Q9BZ71 974 aa22.53■■□□□ 1.2
TRIM28-201ENST00000253024 RAB6CQ9H0N0 254 aa22.53■■□□□ 1.2
TRIM28-201ENST00000253024 MAPK13O15264 365 aa22.53■■□□□ 1.2
TRIM28-201ENST00000253024 GRAP2O75791 330 aa22.53■■□□□ 1.2
TRIM28-201ENST00000253024 SUPT20HL2P0C7V6 817 aa22.53■■□□□ 1.2
TRIM28-201ENST00000253024 PTPRAP18433 802 aa22.53■■□□□ 1.2
TRIM28-201ENST00000253024 GCLCP48506 637 aaPredicted RBP22.53■■□□□ 1.2
TRIM28-201ENST00000253024 IGBP1P78318 339 aa22.53■■□□□ 1.2
TRIM28-201ENST00000253024 OVGP1Q12889 678 aa22.53■■□□□ 1.2
TRIM28-201ENST00000253024 SUPT20HL1Q3ZLR7 823 aa22.53■■□□□ 1.2
TRIM28-201ENST00000253024 C15orf39Q6ZRI6 1047 aa22.53■■□□□ 1.2
TRIM28-201ENST00000253024 TMEM192Q8IY95 271 aa22.53■■□□□ 1.2
TRIM28-201ENST00000253024 IMPG2Q9BZV3 1241 aa22.53■■□□□ 1.2
TRIM28-201ENST00000253024 CEP83Q9Y592 693 aa22.53■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms