RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 SEMA6BQ9H3T3 888 aa14.39□□□□□ -0.11
LDLR-201ENST00000252444 MRGBPQ9NV56 204 aa14.39□□□□□ -0.11
LDLR-201ENST00000252444 KLHL8Q9P2G9 620 aaPredicted RBP14.39□□□□□ -0.11
LDLR-201ENST00000252444 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.39□□□□□ -0.11
LDLR-201ENST00000252444 NAV1Q8NEY1 1877 aa14.39□□□□□ -0.11
LDLR-201ENST00000252444 IGF2BP3O00425 579 aaKnown RBP eCLIP14.39□□□□□ -0.11
LDLR-201ENST00000252444 KRT38O76015 456 aa14.39□□□□□ -0.11
LDLR-201ENST00000252444 FARP2O94887 1054 aaPredicted RBP14.39□□□□□ -0.11
LDLR-201ENST00000252444 FAM163BP0C2L3 166 aa14.39□□□□□ -0.11
LDLR-201ENST00000252444 DDX5P17844 614 aaKnown RBP14.39□□□□□ -0.11
LDLR-201ENST00000252444 ILDR1Q86SU0 546 aaPredicted RBP14.39□□□□□ -0.11
LDLR-201ENST00000252444 PSMB7Q99436 277 aa14.39□□□□□ -0.11
LDLR-201ENST00000252444 FUCA2Q9BTY2 467 aa14.39□□□□□ -0.11
LDLR-201ENST00000252444 ELOVL4Q9GZR5 314 aa14.39□□□□□ -0.11
LDLR-201ENST00000252444 CACYBPQ9HB71 228 aaKnown RBP14.39□□□□□ -0.11
LDLR-201ENST00000252444 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP14.39□□□□□ -0.113e-7■■■■■ 52.1
LDLR-201ENST00000252444 VAV3Q9UKW4 847 aa14.39□□□□□ -0.11
LDLR-201ENST00000252444 A0A087WZ62 844 aa14.39□□□□□ -0.11
LDLR-201ENST00000252444 CYP3A5P20815 502 aa14.39□□□□□ -0.11
LDLR-201ENST00000252444 OR1G1P47890 313 aa14.39□□□□□ -0.11
LDLR-201ENST00000252444 IKBKEQ14164 716 aa14.39□□□□□ -0.11
LDLR-201ENST00000252444 FDXACB1Q9BRP7 624 aaPredicted RBP14.39□□□□□ -0.11
LDLR-201ENST00000252444 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.39□□□□□ -0.11
LDLR-201ENST00000252444 NCAM2O15394 837 aa14.39□□□□□ -0.11
LDLR-201ENST00000252444 PHF2O75151 1096 aa14.39□□□□□ -0.11
LDLR-201ENST00000252444 GRM5P41594 1212 aa14.39□□□□□ -0.11
LDLR-201ENST00000252444 RWDD4Q6NW29 188 aaKnown RBP14.39□□□□□ -0.11
LDLR-201ENST00000252444 FAF2Q96CS3 445 aa14.39□□□□□ -0.11
LDLR-201ENST00000252444 ALDH2P05091 517 aa14.38□□□□□ -0.11
LDLR-201ENST00000252444 MAP2K2P36507 400 aa14.38□□□□□ -0.11
LDLR-201ENST00000252444 TAF1BQ53T94 588 aaPredicted RBP14.38□□□□□ -0.11
LDLR-201ENST00000252444 RABGAP1LQ5R372 815 aa14.38□□□□□ -0.11
LDLR-201ENST00000252444 CEP85LQ5SZL2 805 aa14.38□□□□□ -0.11
LDLR-201ENST00000252444 TIGD7Q6NT04 549 aaPredicted RBP14.38□□□□□ -0.11
LDLR-201ENST00000252444 CCNJLQ8IV13 435 aa14.38□□□□□ -0.11
LDLR-201ENST00000252444 LRRC52Q8N7C0 313 aa14.38□□□□□ -0.11
LDLR-201ENST00000252444 NUDCD1Q96RS6 583 aa14.38□□□□□ -0.11
LDLR-201ENST00000252444 CELF4Q9BZC1 486 aaKnown RBP14.38□□□□□ -0.11
LDLR-201ENST00000252444 DPH5Q9H2P9 285 aa14.38□□□□□ -0.11
LDLR-201ENST00000252444 TLK1Q9UKI8 766 aa14.38□□□□□ -0.11
LDLR-201ENST00000252444 WNK3Q9BYP7 1800 aa14.38□□□□□ -0.11
LDLR-201ENST00000252444 LAMB2P55268 1798 aa14.38□□□□□ -0.11
LDLR-201ENST00000252444 TAC1P20366 129 aa14.38□□□□□ -0.11
LDLR-201ENST00000252444 ZNF268Q14587 947 aaPredicted RBP14.38□□□□□ -0.11
LDLR-201ENST00000252444 CARD9Q9H257 536 aa14.38□□□□□ -0.11
LDLR-201ENST00000252444 MAD1L1Q9Y6D9 718 aa14.38□□□□□ -0.11
LDLR-201ENST00000252444 SLC11A2P49281 568 aa14.38□□□□□ -0.11
LDLR-201ENST00000252444 CNTN2Q02246 1040 aa14.38□□□□□ -0.11
LDLR-201ENST00000252444 HERC6Q8IVU3 1022 aa14.38□□□□□ -0.11
LDLR-201ENST00000252444 TMEM176AQ96HP8 235 aa14.38□□□□□ -0.11
LDLR-201ENST00000252444 SNX12Q9UMY4 172 aa14.38□□□□□ -0.11
LDLR-201ENST00000252444 LRRC10BA6NIK2 292 aa14.38□□□□□ -0.11
LDLR-201ENST00000252444 PRRG1O14668 218 aa14.38□□□□□ -0.11
LDLR-201ENST00000252444 FNTAP49354 379 aa14.38□□□□□ -0.11
LDLR-201ENST00000252444 HARS2P49590 506 aaKnown RBP14.38□□□□□ -0.11
LDLR-201ENST00000252444 GALCP54803 685 aa14.38□□□□□ -0.11
LDLR-201ENST00000252444 BASP1P80723 227 aaKnown RBP14.38□□□□□ -0.11
LDLR-201ENST00000252444 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.38□□□□□ -0.11
LDLR-201ENST00000252444 PDZD8Q8NEN9 1154 aa14.38□□□□□ -0.11
LDLR-201ENST00000252444 EPB41L5Q9HCM4 733 aa14.38□□□□□ -0.11
LDLR-201ENST00000252444 PDE11AQ9HCR9 933 aa14.38□□□□□ -0.11
LDLR-201ENST00000252444 FAN1Q9Y2M0 1017 aa14.38□□□□□ -0.11
LDLR-201ENST00000252444 SMIM23A6NLE4 172 aa14.37□□□□□ -0.11
LDLR-201ENST00000252444 CYB561D2O14569 222 aa14.37□□□□□ -0.11
LDLR-201ENST00000252444 PDGFRAP16234 1089 aa14.37□□□□□ -0.11
LDLR-201ENST00000252444 ADCYAP1R1P41586 468 aa14.37□□□□□ -0.11
LDLR-201ENST00000252444 EPHB3P54753 998 aa14.37□□□□□ -0.11
LDLR-201ENST00000252444 PTENP60484 403 aa14.37□□□□□ -0.11
LDLR-201ENST00000252444 GEN1Q17RS7 908 aa14.37□□□□□ -0.11
LDLR-201ENST00000252444 TC2NQ8N9U0 490 aa14.37□□□□□ -0.11
LDLR-201ENST00000252444 TSEN34Q9BSV6 310 aaKnown RBP14.37□□□□□ -0.11
LDLR-201ENST00000252444 BFARQ9NZS9 450 aa14.37□□□□□ -0.11
LDLR-201ENST00000252444 PAK5Q9P286 719 aa14.37□□□□□ -0.11
LDLR-201ENST00000252444 PCDHA2Q9Y5H9 948 aa14.37□□□□□ -0.11
LDLR-201ENST00000252444 MDM2Q00987 491 aaPredicted RBP14.37□□□□□ -0.11
LDLR-201ENST00000252444 PKN2Q16513 984 aaKnown RBP14.37□□□□□ -0.11
LDLR-201ENST00000252444 EEF2KMTQ96G04 330 aa14.37□□□□□ -0.11
LDLR-201ENST00000252444 CAPNS2Q96L46 248 aa14.37□□□□□ -0.11
LDLR-201ENST00000252444 VPS9D1Q9Y2B5 631 aa14.37□□□□□ -0.11
LDLR-201ENST00000252444 TLR2O60603 784 aa14.37□□□□□ -0.11
LDLR-201ENST00000252444 LUC7L3O95232 432 aaKnown RBP14.37□□□□□ -0.11
LDLR-201ENST00000252444 MMP3P08254 477 aa14.37□□□□□ -0.11
LDLR-201ENST00000252444 FDFT1P37268 417 aa14.37□□□□□ -0.11
LDLR-201ENST00000252444 TUFMP49411 452 aaKnown RBP14.37□□□□□ -0.11
LDLR-201ENST00000252444 PSEN1P49768 467 aa14.37□□□□□ -0.11
LDLR-201ENST00000252444 GRIN1Q05586 938 aa14.37□□□□□ -0.11
LDLR-201ENST00000252444 DEUP1Q05D60 604 aa14.37□□□□□ -0.11
LDLR-201ENST00000252444 TREML2Q5T2D2 321 aa14.37□□□□□ -0.11
LDLR-201ENST00000252444 PYROXD1Q8WU10 500 aa14.37□□□□□ -0.11
LDLR-201ENST00000252444 PCDHB5Q9Y5E4 795 aa14.37□□□□□ -0.11
LDLR-201ENST00000252444 A0A087WUV0 522 aaPredicted RBP14.37□□□□□ -0.11
LDLR-201ENST00000252444 GPAT2Q6NUI2 795 aa14.37□□□□□ -0.11
LDLR-201ENST00000252444 C18orf25Q96B23 403 aaPredicted RBP14.37□□□□□ -0.11
LDLR-201ENST00000252444 FSD1LQ9BXM9 530 aa14.37□□□□□ -0.11
LDLR-201ENST00000252444 DCLK3Q9C098 648 aa14.37□□□□□ -0.11
LDLR-201ENST00000252444 TMEM39AQ9NV64 488 aa14.37□□□□□ -0.11
LDLR-201ENST00000252444 MAFBQ9Y5Q3 323 aaPredicted RBP14.37□□□□□ -0.11
LDLR-201ENST00000252444 XIRP1Q702N8 1843 aaKnown RBP14.37□□□□□ -0.11
LDLR-201ENST00000252444 ZNF286BP0CG31 522 aa14.36□□□□□ -0.11
LDLR-201ENST00000252444 ITIH2P19823 946 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 80.3 ms