RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, human

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCN1A-222	ENST00000642141	DNAJC19	Q96DA6	116 aa		11.17	□□□□□ -0.62
SCN1A-222	ENST00000642141	SAAL1	Q96ER3	474 aa		11.17	□□□□□ -0.62
SCN1A-222	ENST00000642141	FAM84A	Q96KN4	292 aa		11.17	□□□□□ -0.62
SCN1A-222	ENST00000642141	TMEM209	Q96SK2	561 aa		11.17	□□□□□ -0.62
SCN1A-222	ENST00000642141	FAM213A	Q9BRX8	229 aa		11.17	□□□□□ -0.62
SCN1A-222	ENST00000642141	FGFBP2	Q9BYJ0	223 aa		11.17	□□□□□ -0.62
SCN1A-222	ENST00000642141	PLA2G2F	Q9BZM2	168 aa		11.17	□□□□□ -0.62
SCN1A-222	ENST00000642141	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	11.17	□□□□□ -0.62
SCN1A-222	ENST00000642141	TBC1D17	Q9HA65	648 aa		11.17	□□□□□ -0.62
SCN1A-222	ENST00000642141	WNT16	Q9UBV4	365 aa		11.17	□□□□□ -0.62
SCN1A-222	ENST00000642141	STK17A	Q9UEE5	414 aa		11.17	□□□□□ -0.62
SCN1A-222	ENST00000642141	DAXX	Q9UER7	740 aa	Predicted RBP	11.17	□□□□□ -0.62
SCN1A-222	ENST00000642141	INSL5	Q9Y5Q6	135 aa		11.17	□□□□□ -0.62
SCN1A-222	ENST00000642141	USP34	Q70CQ2	3546 aa		11.17	□□□□□ -0.62
SCN1A-222	ENST00000642141	ARHGEF37	A1IGU5	675 aa		11.16	□□□□□ -0.62
SCN1A-222	ENST00000642141	GOLGA8IP	A6NC78	632 aa		11.16	□□□□□ -0.62
SCN1A-222	ENST00000642141	GOLGA8J	A6NMD2	632 aa		11.16	□□□□□ -0.62
SCN1A-222	ENST00000642141		M0QZQ0	153 aa		11.16	□□□□□ -0.62
SCN1A-222	ENST00000642141	LRRN2	O75325	713 aa		11.16	□□□□□ -0.62
SCN1A-222	ENST00000642141	HSP90AA1	P07900	732 aa	Known RBP	11.16	□□□□□ -0.62
SCN1A-222	ENST00000642141	AOC1	P19801	751 aa		11.16	□□□□□ -0.62
SCN1A-222	ENST00000642141	CD72	P21854	359 aa		11.16	□□□□□ -0.62
SCN1A-222	ENST00000642141	ADSS	P30520	456 aa		11.16	□□□□□ -0.62
SCN1A-222	ENST00000642141	CCR2	P41597	374 aa		11.16	□□□□□ -0.62
SCN1A-222	ENST00000642141	LILRA4	P59901	499 aa		11.16	□□□□□ -0.62
SCN1A-222	ENST00000642141	DUSP4	Q13115	394 aa		11.16	□□□□□ -0.62
SCN1A-222	ENST00000642141	C9orf57	Q5W0N0	161 aa		11.16	□□□□□ -0.62
SCN1A-222	ENST00000642141	SCARA3	Q6AZY7	606 aa		11.16	□□□□□ -0.62
SCN1A-222	ENST00000642141	OVOS1	Q6IE37	1185 aa		11.16	□□□□□ -0.62
SCN1A-222	ENST00000642141	CRELD2	Q6UXH1	353 aa	Predicted RBP	11.16	□□□□□ -0.62
SCN1A-222	ENST00000642141	CCDC73	Q6ZRK6	1079 aa		11.16	□□□□□ -0.62
SCN1A-222	ENST00000642141	SYCP3	Q8IZU3	236 aa		11.16	□□□□□ -0.62
SCN1A-222	ENST00000642141	SENP8	Q96LD8	212 aa		11.16	□□□□□ -0.62
SCN1A-222	ENST00000642141	ZSWIM3	Q96MP5	696 aa		11.16	□□□□□ -0.62
SCN1A-222	ENST00000642141	FOXQ1	Q9C009	403 aa		11.16	□□□□□ -0.62
SCN1A-222	ENST00000642141	PCIF1	Q9H4Z3	704 aa		11.16	□□□□□ -0.62
SCN1A-222	ENST00000642141	ARHGEF3	Q9NR81	526 aa		11.16	□□□□□ -0.62
SCN1A-222	ENST00000642141	PANK4	Q9NVE7	773 aa		11.16	□□□□□ -0.62
SCN1A-222	ENST00000642141	DPP3	Q9NY33	737 aa		11.16	□□□□□ -0.62
SCN1A-222	ENST00000642141	CEP72	Q9P209	647 aa		11.16	□□□□□ -0.62
SCN1A-222	ENST00000642141	ZFP37	Q9Y6Q3	630 aa	Predicted RBP	11.16	□□□□□ -0.62
SCN1A-222	ENST00000642141	VPS13A	Q96RL7	3174 aa		11.16	□□□□□ -0.62
SCN1A-222	ENST00000642141	CIT	O14578	2027 aa		11.16	□□□□□ -0.62
SCN1A-222	ENST00000642141	SPTLC2	O15270	562 aa		11.15	□□□□□ -0.62
SCN1A-222	ENST00000642141	XPOT	O43592	962 aa	Known RBP	11.15	□□□□□ -0.62
SCN1A-222	ENST00000642141	PRPF6	O94906	941 aa	Known RBP	11.15	□□□□□ -0.62
SCN1A-222	ENST00000642141	OAZ2	O95190	189 aa		11.15	□□□□□ -0.62
SCN1A-222	ENST00000642141	VNN2	O95498	520 aa		11.15	□□□□□ -0.62
SCN1A-222	ENST00000642141	ADRB2	P07550	413 aa		11.15	□□□□□ -0.62
SCN1A-222	ENST00000642141	CYP3A5	P20815	502 aa		11.15	□□□□□ -0.62
SCN1A-222	ENST00000642141	SCP2	P22307	547 aa		11.15	□□□□□ -0.62
SCN1A-222	ENST00000642141	WNT7B	P56706	349 aa		11.15	□□□□□ -0.62
SCN1A-222	ENST00000642141	GRM2	Q14416	872 aa		11.15	□□□□□ -0.62
SCN1A-222	ENST00000642141	CYP4A22	Q5TCH4	519 aa		11.15	□□□□□ -0.62
SCN1A-222	ENST00000642141	TPGS2	Q68CL5	300 aa		11.15	□□□□□ -0.62
SCN1A-222	ENST00000642141	TANGO2	Q6ICL3	276 aa		11.15	□□□□□ -0.62
SCN1A-222	ENST00000642141	SLFN12L	Q6IEE8	588 aa		11.15	□□□□□ -0.62
SCN1A-222	ENST00000642141	MTSS1L	Q765P7	747 aa		11.15	□□□□□ -0.62
SCN1A-222	ENST00000642141	PDZD4	Q76G19	769 aa	Predicted RBP	11.15	□□□□□ -0.62
SCN1A-222	ENST00000642141	ELMOD1	Q8N336	334 aa		11.15	□□□□□ -0.62
SCN1A-222	ENST00000642141	TTC9B	Q8N6N2	239 aa		11.15	□□□□□ -0.62
SCN1A-222	ENST00000642141	DTWD2	Q8NBA8	298 aa		11.15	□□□□□ -0.62
SCN1A-222	ENST00000642141	ATAD1	Q8NBU5	361 aa		11.15	□□□□□ -0.62
SCN1A-222	ENST00000642141	LINC00301	Q8NCQ3	95 aa		11.15	□□□□□ -0.62
SCN1A-222	ENST00000642141	GLIS3	Q8NEA6	775 aa		11.15	□□□□□ -0.62
SCN1A-222	ENST00000642141	ZNF512	Q96ME7	567 aa	Predicted RBP	11.15	□□□□□ -0.62
SCN1A-222	ENST00000642141	ACCS	Q96QU6	501 aa		11.15	□□□□□ -0.62
SCN1A-222	ENST00000642141	CRISPLD1	Q9H336	500 aa		11.15	□□□□□ -0.62
SCN1A-222	ENST00000642141	AFF4	Q9UHB7	1163 aa	Known RBP	11.15	□□□□□ -0.62
SCN1A-222	ENST00000642141	KCNH3	Q9ULD8	1083 aa		11.15	□□□□□ -0.62
SCN1A-222	ENST00000642141	DOCK8	Q8NF50	2099 aa		11.15	□□□□□ -0.63
SCN1A-222	ENST00000642141	COL4A3	Q01955	1670 aa		11.14	□□□□□ -0.63
SCN1A-222	ENST00000642141	WDR87	Q6ZQQ6	2873 aa		11.14	□□□□□ -0.63
SCN1A-222	ENST00000642141	PIR	O00625	290 aa		11.14	□□□□□ -0.63
SCN1A-222	ENST00000642141	CYB561D2	O14569	222 aa		11.14	□□□□□ -0.63
SCN1A-222	ENST00000642141	PPP1R37	O75864	691 aa		11.14	□□□□□ -0.63
SCN1A-222	ENST00000642141	ODC1	P11926	461 aa		11.14	□□□□□ -0.63
SCN1A-222	ENST00000642141	GAP43	P17677	238 aa		11.14	□□□□□ -0.63
SCN1A-222	ENST00000642141	NASP	P49321	788 aa	Predicted RBP	11.14	□□□□□ -0.63
SCN1A-222	ENST00000642141	AARS	P49588	968 aa	Known RBP eCLIP	11.14	□□□□□ -0.63
SCN1A-222	ENST00000642141	TFAM	Q00059	246 aa	Known RBP	11.14	□□□□□ -0.63
SCN1A-222	ENST00000642141	PKP1	Q13835	747 aa		11.14	□□□□□ -0.63
SCN1A-222	ENST00000642141	SLC44A4	Q53GD3	710 aa		11.14	□□□□□ -0.63
SCN1A-222	ENST00000642141	FAM78A	Q5JUQ0	283 aa		11.14	□□□□□ -0.63
SCN1A-222	ENST00000642141	PRSS36	Q5K4E3	855 aa		11.14	□□□□□ -0.63
SCN1A-222	ENST00000642141	L1TD1	Q5T7N2	865 aa	Known RBP	11.14	□□□□□ -0.63
SCN1A-222	ENST00000642141	IQCE	Q6IPM2	695 aa		11.14	□□□□□ -0.63
SCN1A-222	ENST00000642141	ARMCX5	Q6P1M9	558 aa		11.14	□□□□□ -0.63
SCN1A-222	ENST00000642141	RTL10	Q7L3V2	364 aa		11.14	□□□□□ -0.63
SCN1A-222	ENST00000642141	FRMD5	Q7Z6J6	570 aa		11.14	□□□□□ -0.63
SCN1A-222	ENST00000642141	HSCB	Q8IWL3	235 aa		11.14	□□□□□ -0.63
SCN1A-222	ENST00000642141	CD302	Q8IX05	232 aa		11.14	□□□□□ -0.63
SCN1A-222	ENST00000642141	EFCAB13	Q8IY85	973 aa		11.14	□□□□□ -0.63
SCN1A-222	ENST00000642141	KCNN1	Q92952	543 aa		11.14	□□□□□ -0.63
SCN1A-222	ENST00000642141	DHX58	Q96C10	678 aa		11.14	□□□□□ -0.63
SCN1A-222	ENST00000642141	ZNF396	Q96N95	335 aa	Predicted RBP	11.14	□□□□□ -0.63
SCN1A-222	ENST00000642141	RTP3	Q9BQQ7	232 aa		11.14	□□□□□ -0.63
SCN1A-222	ENST00000642141	PYM1	Q9BRP8	204 aa	Known RBP	11.14	□□□□□ -0.63
SCN1A-222	ENST00000642141	STRA6	Q9BX79	667 aa		11.14	□□□□□ -0.63
SCN1A-222	ENST00000642141	ST6GALNAC4	Q9H4F1	302 aa		11.14	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms