RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 GUCY2FP51841 1108 aa5.62□□□□□ -1.51
CD44-239ENST00000639002 AMPD3Q01432 767 aa5.62□□□□□ -1.51
CD44-239ENST00000639002 TLE1Q04724 770 aa5.62□□□□□ -1.51
CD44-239ENST00000639002 ODF1Q14990 250 aa5.62□□□□□ -1.51
CD44-239ENST00000639002 MIGA2Q7L4E1 593 aa5.62□□□□□ -1.51
CD44-239ENST00000639002 TMIEQ8NEW7 156 aa5.62□□□□□ -1.51
CD44-239ENST00000639002 ADARB2Q9NS39 739 aaKnown RBP5.62□□□□□ -1.51
CD44-239ENST00000639002 JKAMPQ9P055 326 aa5.62□□□□□ -1.51
CD44-239ENST00000639002 LRIT1Q9P2V4 623 aa5.62□□□□□ -1.51
CD44-239ENST00000639002 NIPSNAP3AQ9UFN0 247 aaPredicted RBP5.62□□□□□ -1.51
CD44-239ENST00000639002 SAP30BPQ9UHR5 308 aaKnown RBP5.62□□□□□ -1.51
CD44-239ENST00000639002 CADPSQ9ULU8 1353 aa5.62□□□□□ -1.51
CD44-239ENST00000639002 PRAMEF33A0A0G2JMD5 474 aa5.61□□□□□ -1.51
CD44-239ENST00000639002 PRAMEF10O60809 474 aa5.61□□□□□ -1.51
CD44-239ENST00000639002 KATNA1O75449 491 aa5.61□□□□□ -1.51
CD44-239ENST00000639002 ELFN1P0C7U0 828 aa5.61□□□□□ -1.51
CD44-239ENST00000639002 KCNA2P16389 499 aa5.61□□□□□ -1.51
CD44-239ENST00000639002 CDK11BP21127 795 aaKnown RBP5.61□□□□□ -1.51
CD44-239ENST00000639002 DSC2Q02487 901 aa5.61□□□□□ -1.51
CD44-239ENST00000639002 NHLH1Q02575 133 aa5.61□□□□□ -1.51
CD44-239ENST00000639002 ATP2B3Q16720 1220 aa5.61□□□□□ -1.51
CD44-239ENST00000639002 CD300EQ496F6 205 aaPredicted RBP5.61□□□□□ -1.51
CD44-239ENST00000639002 TSHZ1Q6ZSZ6 1077 aa5.61□□□□□ -1.51
CD44-239ENST00000639002 ARHGEF25Q86VW2 580 aa5.61□□□□□ -1.51
CD44-239ENST00000639002 SLC30A5Q8TAD4 765 aa5.61□□□□□ -1.51
CD44-239ENST00000639002 LPIN2Q92539 896 aa5.61□□□□□ -1.51
CD44-239ENST00000639002 CLPTM1LQ96KA5 538 aa5.61□□□□□ -1.51
CD44-239ENST00000639002 KLK15Q9H2R5 256 aa5.61□□□□□ -1.51
CD44-239ENST00000639002 KIAA1586Q9HCI6 787 aa5.61□□□□□ -1.51
CD44-239ENST00000639002 IL17RBQ9NRM6 502 aa5.61□□□□□ -1.51
CD44-239ENST00000639002 DMTF1Q9Y222 760 aa5.61□□□□□ -1.51
CD44-239ENST00000639002 CDYLQ9Y232 598 aa5.61□□□□□ -1.51
CD44-239ENST00000639002 TNKSO95271 1327 aa5.6□□□□□ -1.51
CD44-239ENST00000639002 E9PLN8 166 aa5.6□□□□□ -1.51
CD44-239ENST00000639002 PROM1O43490 865 aa5.6□□□□□ -1.51
CD44-239ENST00000639002 XPOTO43592 962 aaKnown RBP5.6□□□□□ -1.51
CD44-239ENST00000639002 CD1AP06126 327 aa5.6□□□□□ -1.51
CD44-239ENST00000639002 SLC16A1P53985 500 aa5.6□□□□□ -1.51
CD44-239ENST00000639002 EVA1CP58658 441 aa5.6□□□□□ -1.51
CD44-239ENST00000639002 KRT85P78386 507 aa5.6□□□□□ -1.51
CD44-239ENST00000639002 MC2RQ01718 297 aa5.6□□□□□ -1.51
CD44-239ENST00000639002 KIF23Q02241 960 aaPredicted RBP5.6□□□□□ -1.51
CD44-239ENST00000639002 DYRK1AQ13627 763 aa5.6□□□□□ -1.51
CD44-239ENST00000639002 RAB39AQ14964 217 aa5.6□□□□□ -1.51
CD44-239ENST00000639002 ZNF365Q70YC5 407 aa5.6□□□□□ -1.51
CD44-239ENST00000639002 CFAP52Q8N1V2 620 aa5.6□□□□□ -1.51
CD44-239ENST00000639002 NSUN6Q8TEA1 469 aaKnown RBP5.6□□□□□ -1.51
CD44-239ENST00000639002 TMEM125Q96AQ2 219 aa5.6□□□□□ -1.51
CD44-239ENST00000639002 VKORC1Q9BQB6 163 aa5.6□□□□□ -1.51
CD44-239ENST00000639002 CALCOCO1Q9P1Z2 691 aa5.6□□□□□ -1.51
CD44-239ENST00000639002 SHTN1A0MZ66 631 aa5.59□□□□□ -1.51
CD44-239ENST00000639002 PRSS29PA6NIE9 313 aa5.59□□□□□ -1.51
CD44-239ENST00000639002 YY2O15391 372 aa5.59□□□□□ -1.51
CD44-239ENST00000639002 PEX1O43933 1283 aa5.59□□□□□ -1.51
CD44-239ENST00000639002 RBMXL2O75526 392 aaKnown RBP5.59□□□□□ -1.51
CD44-239ENST00000639002 HNRNPMP52272 730 aaKnown RBP eCLIP5.59□□□□□ -1.51
CD44-239ENST00000639002 RPS7P62081 194 aaKnown RBP5.59□□□□□ -1.51
CD44-239ENST00000639002 FPGSQ05932 587 aa5.59□□□□□ -1.51
CD44-239ENST00000639002 ITKQ08881 620 aa5.59□□□□□ -1.51
CD44-239ENST00000639002 SNAPC2Q13487 334 aa5.59□□□□□ -1.51
CD44-239ENST00000639002 CLNKQ7Z7G1 428 aa5.59□□□□□ -1.51
CD44-239ENST00000639002 PRPF38AQ8NAV1 312 aaKnown RBP5.59□□□□□ -1.51
CD44-239ENST00000639002 PDPRQ8NCN5 879 aa5.59□□□□□ -1.51
CD44-239ENST00000639002 ZNF384Q8TF68 577 aa5.59□□□□□ -1.51
CD44-239ENST00000639002 INTS13Q9NVM9 706 aa5.59□□□□□ -1.51
CD44-239ENST00000639002 FRMD4BQ9Y2L6 1034 aa5.59□□□□□ -1.51
CD44-239ENST00000639002 WASHC2CQ9Y4E1 1318 aa5.58□□□□□ -1.52
CD44-239ENST00000639002 NT5C1B-RDH14C9J2C7 533 aa5.58□□□□□ -1.52
CD44-239ENST00000639002 F2RL2O00254 374 aa5.58□□□□□ -1.52
CD44-239ENST00000639002 MPPED1O15442 326 aa5.58□□□□□ -1.52
CD44-239ENST00000639002 ZRANB2O95218 330 aaKnown RBP eCLIP5.58□□□□□ -1.52
CD44-239ENST00000639002 LPOP22079 712 aaPredicted RBP5.58□□□□□ -1.52
CD44-239ENST00000639002 MAPK10P53779 464 aa5.58□□□□□ -1.52
CD44-239ENST00000639002 FAM50AQ14320 339 aaKnown RBP5.58□□□□□ -1.52
CD44-239ENST00000639002 KHDC1Q4VXA5 237 aaKnown RBP5.58□□□□□ -1.52
CD44-239ENST00000639002 ZKSCAN2Q63HK3 967 aa5.58□□□□□ -1.52
CD44-239ENST00000639002 ADGRG5Q8IZF4 528 aa5.58□□□□□ -1.52
CD44-239ENST00000639002 SLC17A8Q8NDX2 589 aa5.58□□□□□ -1.52
CD44-239ENST00000639002 NELL1Q92832 810 aa5.58□□□□□ -1.52
CD44-239ENST00000639002 VRK1Q99986 396 aaPredicted RBP5.58□□□□□ -1.52
CD44-239ENST00000639002 SPATA5L1Q9BVQ7 753 aa5.58□□□□□ -1.52
CD44-239ENST00000639002 PACSIN1Q9BY11 444 aa5.58□□□□□ -1.52
CD44-239ENST00000639002 IMPG2Q9BZV3 1241 aa5.58□□□□□ -1.52
CD44-239ENST00000639002 ASB6Q9NWX5 421 aa5.58□□□□□ -1.52
CD44-239ENST00000639002 SLC17A6Q9P2U8 582 aa5.58□□□□□ -1.52
CD44-239ENST00000639002 ARPP21Q9UBL0 812 aaPredicted RBP5.58□□□□□ -1.52
CD44-239ENST00000639002 ZBTB32Q9Y2Y4 487 aaPredicted RBP5.58□□□□□ -1.52
CD44-239ENST00000639002 CCDC195A0A1B0GUA6 201 aa5.57□□□□□ -1.52
CD44-239ENST00000639002 VWC2LB2RUY7 222 aa5.57□□□□□ -1.52
CD44-239ENST00000639002 MALP21145 153 aa5.57□□□□□ -1.52
CD44-239ENST00000639002 ANXA11P50995 505 aaKnown RBP5.57□□□□□ -1.52
CD44-239ENST00000639002 POU6F2P78424 691 aaPredicted RBP5.57□□□□□ -1.52
CD44-239ENST00000639002 ZNF844Q08AG5 666 aa5.57□□□□□ -1.52
CD44-239ENST00000639002 PEG10Q86TG7 708 aaKnown RBP5.57□□□□□ -1.52
CD44-239ENST00000639002 FBXO41Q8TF61 875 aa5.57□□□□□ -1.52
CD44-239ENST00000639002 TFAP2BQ92481 460 aa5.57□□□□□ -1.52
CD44-239ENST00000639002 MTMR8Q96EF0 704 aa5.57□□□□□ -1.52
CD44-239ENST00000639002 MRPS18AQ9NVS2 196 aaKnown RBP5.57□□□□□ -1.52
CD44-239ENST00000639002 WDR27A2RRH5 827 aa5.56□□□□□ -1.52
CD44-239ENST00000639002 LRRC14BA6NHZ5 514 aa5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms