RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 PSMD6Q15008 389 aa13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 DCUN1D2Q6PH85 259 aa13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 TBC1D1Q86TI0 1168 aaPredicted RBP13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 ABRAQ8N0Z2 381 aa13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 C12orf50Q8NA57 414 aaPredicted RBP13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 C3orf20Q8ND61 904 aa13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 TCP11Q8WWU5 503 aa13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 CENPTQ96BT3 561 aa13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 MCEEQ96PE7 176 aa13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 TRAIPQ9BWF2 469 aa13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 FHDC1Q9C0D6 1143 aaPredicted RBP13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 ACTR5Q9H9F9 607 aaPredicted RBP13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 ABCF3Q9NUQ8 709 aa13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 NINJ2Q9NZG7 142 aa13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 SAE1Q9UBE0 346 aaPredicted RBP13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 F8VP50 259 aa13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 DKC1O60832 514 aaKnown RBP eCLIP13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 CLTAP09496 248 aa13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 BRD2P25440 801 aaKnown RBP13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 SLC1A1P43005 524 aa13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 CENPCQ03188 943 aa13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 NCOA4Q13772 614 aa13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 TMED2Q15363 201 aa13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 TMEM132AQ24JP5 1023 aa13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 CYP4A22Q5TCH4 519 aa13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 ANGEL2Q5VTE6 544 aaKnown RBP13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 CYB5D1Q6P9G0 228 aa13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 PIM2Q9P1W9 311 aa13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 GGA2Q9UJY4 613 aa13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 ZNF646O15015 1829 aaPredicted RBP13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 SPAG7O75391 227 aa13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 SUPT20HL2P0C7V6 817 aa13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 STX2P32856 288 aa13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 NOMO3P69849 1222 aa13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 ORC1Q13415 861 aa13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 MPP2Q14168 576 aa13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 E2F5Q15329 346 aa13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 SUPT20HL1Q3ZLR7 823 aa13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 TXNRD3NBQ6F5E7 133 aa13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 SUGP1Q8IWZ8 645 aaKnown RBP13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 FUKQ8N0W3 1084 aa13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 TBC1D31Q96DN5 1066 aa13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 ACAD9Q9H845 621 aa13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 MRPL47Q9HD33 250 aaKnown RBP13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 PDLIM7Q9NR12 457 aa13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 DNPEPQ9ULA0 475 aa13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 MAFGO15525 162 aa13.71□□□□□ -0.21
CCDC88A-214ENST00000621814 KRT1P04264 644 aa13.71□□□□□ -0.21
CCDC88A-214ENST00000621814 CYP1A1P04798 512 aaPredicted RBP13.71□□□□□ -0.21
CCDC88A-214ENST00000621814 FDX1P10109 184 aa13.71□□□□□ -0.21
CCDC88A-214ENST00000621814 ACO1P21399 889 aaKnown RBP13.71□□□□□ -0.21
CCDC88A-214ENST00000621814 RDXP35241 583 aaKnown RBP13.71□□□□□ -0.21
CCDC88A-214ENST00000621814 GHRHRQ02643 423 aa13.71□□□□□ -0.21
CCDC88A-214ENST00000621814 PTK6Q13882 451 aa13.71□□□□□ -0.21
CCDC88A-214ENST00000621814 C15orf39Q6ZRI6 1047 aa13.71□□□□□ -0.21
CCDC88A-214ENST00000621814 FAM47EQ6ZV65 393 aa13.71□□□□□ -0.21
CCDC88A-214ENST00000621814 SCYL3Q8IZE3 742 aa13.71□□□□□ -0.21
CCDC88A-214ENST00000621814 TMEM130Q8N3G9 435 aa13.71□□□□□ -0.21
CCDC88A-214ENST00000621814 ZNF606Q8WXB4 792 aa13.71□□□□□ -0.21
CCDC88A-214ENST00000621814 TRIM11Q96F44 468 aa13.71□□□□□ -0.21
CCDC88A-214ENST00000621814 FAM81BQ96LP2 452 aa13.71□□□□□ -0.21
CCDC88A-214ENST00000621814 RBM15Q96T37 977 aaKnown RBP eCLIP13.71□□□□□ -0.212e-12■□□□□ 9
CCDC88A-214ENST00000621814 TEX13BQ9BXU2 312 aa13.71□□□□□ -0.21
CCDC88A-214ENST00000621814 IMPG2Q9BZV3 1241 aa13.71□□□□□ -0.21
CCDC88A-214ENST00000621814 MTMR12Q9C0I1 747 aa13.71□□□□□ -0.21
CCDC88A-214ENST00000621814 SAYSD1Q9NPB0 183 aa13.71□□□□□ -0.21
CCDC88A-214ENST00000621814 BAIAP2L1Q9UHR4 511 aa13.71□□□□□ -0.21
CCDC88A-214ENST00000621814 NAALADL1Q9UQQ1 740 aa13.71□□□□□ -0.21
CCDC88A-214ENST00000621814 IVNS1ABPQ9Y6Y0 642 aa13.71□□□□□ -0.21
CCDC88A-214ENST00000621814 OATP04181 439 aa13.71□□□□□ -0.22
CCDC88A-214ENST00000621814 MYBL1P10243 752 aa13.71□□□□□ -0.22
CCDC88A-214ENST00000621814 TFAMQ00059 246 aaKnown RBP13.71□□□□□ -0.22
CCDC88A-214ENST00000621814 SMTNL2Q2TAL5 461 aa13.71□□□□□ -0.22
CCDC88A-214ENST00000621814 DPH6Q7L8W6 267 aa13.71□□□□□ -0.22
CCDC88A-214ENST00000621814 GPATCH11Q8N954 259 aa13.71□□□□□ -0.22
CCDC88A-214ENST00000621814 RDM1Q8NG50 284 aa13.71□□□□□ -0.22
CCDC88A-214ENST00000621814 ZC3H11AO75152 810 aaKnown RBP eCLIP13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 RASSF9O75901 435 aa13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 NFX1Q12986 1120 aaKnown RBP13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 KCNT1Q5JUK3 1230 aa13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 VSTM1Q6UX27 236 aa13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 MFSD7Q6UXD7 560 aa13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 CROCCP2Q86T23 111 aa13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 PARP9Q8IXQ6 854 aa13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 CCDC89Q8N998 374 aa13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 FEZF2Q8TBJ5 459 aa13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 MAIP1Q8WWC4 291 aa13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 ZBTB10Q96DT7 871 aa13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 CAMKK2Q96RR4 588 aa13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 NSRP1Q9H0G5 558 aaKnown RBP13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 AS3MTQ9HBK9 375 aa13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 AVENQ9NQS1 362 aaPredicted RBP13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 NXF1Q9UBU9 619 aaKnown RBP13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 LRRD1A4D1F6 860 aa13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 BANF1O75531 89 aa13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 ARSEP51690 589 aa13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 MYL6P60660 151 aa13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 GPS1Q13098 491 aa13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 STXBP2Q15833 593 aa13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 RHBDF2Q6PJF5 856 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms