RNA–Protein interactions for RNA: ENST00000620996.4

VTA1-205, Transcript of vesicle trafficking 1, humanhuman

TSL 3 BASIC

Gene VTA1, Length 3,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1-205ENST00000620996 KRT35Q92764 455 aa10.59□□□□□ -0.71
VTA1-205ENST00000620996 CCDC102AQ96A19 550 aa10.59□□□□□ -0.71
VTA1-205ENST00000620996 KIF12Q96FN5 646 aa10.59□□□□□ -0.71
VTA1-205ENST00000620996 APBA2Q99767 749 aa10.59□□□□□ -0.71
VTA1-205ENST00000620996 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.59□□□□□ -0.714e-6■□□□□ 9.9
VTA1-205ENST00000620996 ARHGAP39Q9C0H5 1083 aa10.59□□□□□ -0.71
VTA1-205ENST00000620996 CDHR5Q9HBB8 845 aa10.59□□□□□ -0.71
VTA1-205ENST00000620996 EPB41L5Q9HCM4 733 aa10.59□□□□□ -0.71
VTA1-205ENST00000620996 GTF3C4Q9UKN8 822 aa10.59□□□□□ -0.71
VTA1-205ENST00000620996 RRN3P2A6NIE6 340 aa10.59□□□□□ -0.71
VTA1-205ENST00000620996 SLC10A3P09131 477 aa10.59□□□□□ -0.71
VTA1-205ENST00000620996 ZNF865P0CJ78 1059 aaPredicted RBP10.59□□□□□ -0.71
VTA1-205ENST00000620996 ITGA4P13612 1032 aa10.59□□□□□ -0.71
VTA1-205ENST00000620996 POLR2BP30876 1174 aaKnown RBP10.59□□□□□ -0.71
VTA1-205ENST00000620996 HLTFQ14527 1009 aaKnown RBP eCLIP10.59□□□□□ -0.71
VTA1-205ENST00000620996 GLRA4Q5JXX5 417 aa10.59□□□□□ -0.71
VTA1-205ENST00000620996 BEND6Q5SZJ8 279 aaPredicted RBP10.59□□□□□ -0.71
VTA1-205ENST00000620996 CYP4F22Q6NT55 531 aa10.59□□□□□ -0.71
VTA1-205ENST00000620996 C7orf31Q8N865 590 aa10.59□□□□□ -0.71
VTA1-205ENST00000620996 RNF217Q8TC41 542 aa10.59□□□□□ -0.71
VTA1-205ENST00000620996 RNPC3Q96LT9 517 aaKnown RBP10.59□□□□□ -0.71
VTA1-205ENST00000620996 TRIM7Q9C029 511 aa10.59□□□□□ -0.71
VTA1-205ENST00000620996 STIM2Q9P246 746 aa10.59□□□□□ -0.71
VTA1-205ENST00000620996 AGAP1Q9UPQ3 857 aa10.59□□□□□ -0.71
VTA1-205ENST00000620996 TREHO43280 583 aa10.59□□□□□ -0.71
VTA1-205ENST00000620996 TUBBP07437 444 aa10.59□□□□□ -0.71
VTA1-205ENST00000620996 MYBL2P10244 700 aa10.59□□□□□ -0.71
VTA1-205ENST00000620996 PSMC4P43686 418 aa10.59□□□□□ -0.71
VTA1-205ENST00000620996 AMHR2Q16671 573 aa10.59□□□□□ -0.71
VTA1-205ENST00000620996 SKIDA1Q1XH10 827 aa10.59□□□□□ -0.71
VTA1-205ENST00000620996 SEL1L2Q5TEA6 688 aa10.59□□□□□ -0.71
VTA1-205ENST00000620996 DAB2IPQ5VWQ8 1189 aa10.59□□□□□ -0.71
VTA1-205ENST00000620996 SND1Q7KZF4 910 aaKnown RBP eCLIP10.59□□□□□ -0.71
VTA1-205ENST00000620996 SLFN11Q7Z7L1 901 aa10.59□□□□□ -0.71
VTA1-205ENST00000620996 SESTD1Q86VW0 696 aa10.59□□□□□ -0.71
VTA1-205ENST00000620996 HES6Q96HZ4 224 aa10.59□□□□□ -0.71
VTA1-205ENST00000620996 TRIM31Q9BZY9 425 aa10.59□□□□□ -0.71
VTA1-205ENST00000620996 GPBP1L1Q9HC44 474 aaPredicted RBP10.59□□□□□ -0.71
VTA1-205ENST00000620996 SNTG2Q9NY99 539 aa10.59□□□□□ -0.71
VTA1-205ENST00000620996 PIN4Q9Y237 131 aaKnown RBP10.59□□□□□ -0.71
VTA1-205ENST00000620996 STXBP5LQ9Y2K9 1186 aa10.59□□□□□ -0.71
VTA1-205ENST00000620996 DOCK3Q8IZD9 2030 aa10.58□□□□□ -0.72
VTA1-205ENST00000620996 TARSL2A2RTX5 802 aaKnown RBP10.58□□□□□ -0.72
VTA1-205ENST00000620996 A6NJR5 290 aa10.58□□□□□ -0.72
VTA1-205ENST00000620996 FSCN1Q16658 493 aaKnown RBP10.58□□□□□ -0.72
VTA1-205ENST00000620996 GNASQ5JWF2 1037 aa10.58□□□□□ -0.72
VTA1-205ENST00000620996 WDR93Q6P2C0 686 aa10.58□□□□□ -0.72
VTA1-205ENST00000620996 MCOLN2Q8IZK6 566 aa10.58□□□□□ -0.72
VTA1-205ENST00000620996 C1orf127Q8N9H9 656 aa10.58□□□□□ -0.72
VTA1-205ENST00000620996 C1orf131Q8NDD1 294 aaKnown RBP10.58□□□□□ -0.72
VTA1-205ENST00000620996 GNEQ9Y223 722 aaKnown RBP10.58□□□□□ -0.72
VTA1-205ENST00000620996 NRCAMQ92823 1304 aa10.58□□□□□ -0.72
VTA1-205ENST00000620996 RAD51CO43502 376 aa10.58□□□□□ -0.72
VTA1-205ENST00000620996 PGK1P00558 417 aa10.58□□□□□ -0.72
VTA1-205ENST00000620996 CASP8Q14790 479 aa10.58□□□□□ -0.72
VTA1-205ENST00000620996 ZNF677Q86XU0 584 aa10.58□□□□□ -0.72
VTA1-205ENST00000620996 MSL3Q8N5Y2 521 aaKnown RBP10.58□□□□□ -0.72
VTA1-205ENST00000620996 ZNF606Q8WXB4 792 aa10.58□□□□□ -0.72
VTA1-205ENST00000620996 SOCS4Q8WXH5 440 aa10.58□□□□□ -0.72
VTA1-205ENST00000620996 ALG3Q92685 438 aa10.58□□□□□ -0.72
VTA1-205ENST00000620996 KAT2BQ92831 832 aa10.58□□□□□ -0.72
VTA1-205ENST00000620996 FUT8Q9BYC5 575 aa10.58□□□□□ -0.72
VTA1-205ENST00000620996 SMYD3Q9H7B4 428 aa10.58□□□□□ -0.72
VTA1-205ENST00000620996 SYNCQ9H7C4 482 aa10.58□□□□□ -0.72
VTA1-205ENST00000620996 GOLGA6L10A0A0M3HER8 536 aa10.57□□□□□ -0.72
VTA1-205ENST00000620996 MYO1FO00160 1098 aa10.57□□□□□ -0.72
VTA1-205ENST00000620996 B4GALT4O60513 344 aa10.57□□□□□ -0.72
VTA1-205ENST00000620996 F2P00734 622 aa10.57□□□□□ -0.72
VTA1-205ENST00000620996 CYP1A2P05177 515 aa10.57□□□□□ -0.72
VTA1-205ENST00000620996 YARSP54577 528 aaKnown RBP10.57□□□□□ -0.72
VTA1-205ENST00000620996 GPS2Q13227 327 aa10.57□□□□□ -0.72
VTA1-205ENST00000620996 SLC10A6Q3KNW5 377 aa10.57□□□□□ -0.72
VTA1-205ENST00000620996 LINC01465Q8N7H1 131 aa10.57□□□□□ -0.72
VTA1-205ENST00000620996 KCNN1Q92952 543 aa10.57□□□□□ -0.72
VTA1-205ENST00000620996 EIF2AQ9BY44 585 aaKnown RBP10.57□□□□□ -0.72
VTA1-205ENST00000620996 NFKBIZQ9BYH8 718 aa10.57□□□□□ -0.72
VTA1-205ENST00000620996 KLK14Q9P0G3 267 aa10.57□□□□□ -0.72
VTA1-205ENST00000620996 UVRAGQ9P2Y5 699 aa10.57□□□□□ -0.72
VTA1-205ENST00000620996 PARP2Q9UGN5 583 aa10.57□□□□□ -0.72
VTA1-205ENST00000620996 ATP8B3O60423 1300 aa10.57□□□□□ -0.72
VTA1-205ENST00000620996 C17orf102A2RUQ5 167 aa10.57□□□□□ -0.72
VTA1-205ENST00000620996 GOLGA8SH3BPF8 625 aa10.57□□□□□ -0.72
VTA1-205ENST00000620996 DDX3YO15523 660 aaKnown RBP10.57□□□□□ -0.72
VTA1-205ENST00000620996 GLI1P08151 1106 aa10.57□□□□□ -0.72
VTA1-205ENST00000620996 UNGP13051 313 aaPredicted RBP10.57□□□□□ -0.72
VTA1-205ENST00000620996 AKAP5P24588 427 aa10.57□□□□□ -0.72
VTA1-205ENST00000620996 C11orf63Q6NUN7 778 aa10.57□□□□□ -0.72
VTA1-205ENST00000620996 CCNI2Q6ZMN8 369 aaPredicted RBP10.57□□□□□ -0.72
VTA1-205ENST00000620996 ZNF410Q86VK4 478 aa10.57□□□□□ -0.72
VTA1-205ENST00000620996 CCDC50Q8IVM0 306 aa10.57□□□□□ -0.72
VTA1-205ENST00000620996 IFT20Q8IY31 132 aa10.57□□□□□ -0.72
VTA1-205ENST00000620996 HPDLQ96IR7 371 aa10.57□□□□□ -0.72
VTA1-205ENST00000620996 ZSWIM1Q9BR11 485 aa10.57□□□□□ -0.72
VTA1-205ENST00000620996 AMACRQ9UHK6 382 aa10.57□□□□□ -0.72
VTA1-205ENST00000620996 NFU1Q9UMS0 254 aa10.57□□□□□ -0.72
VTA1-205ENST00000620996 KAT6AQ92794 2004 aa10.57□□□□□ -0.72
VTA1-205ENST00000620996 CTSHP09668 335 aa10.57□□□□□ -0.72
VTA1-205ENST00000620996 PLA2G4AP47712 749 aa10.57□□□□□ -0.72
VTA1-205ENST00000620996 INHBEP58166 350 aa10.57□□□□□ -0.72
VTA1-205ENST00000620996 YWHAEP62258 255 aaKnown RBP10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms