RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 ENPEPQ07075 957 aa17.84■□□□□ 0.45
CCDC28A-202ENST00000611852 BFSP1Q12934 665 aa17.84■□□□□ 0.45
CCDC28A-202ENST00000611852 ADAM15Q13444 863 aa17.84■□□□□ 0.45
CCDC28A-202ENST00000611852 KCNC3Q14003 757 aa17.84■□□□□ 0.45
CCDC28A-202ENST00000611852 PSMD5Q16401 504 aa17.84■□□□□ 0.45
CCDC28A-202ENST00000611852 CTC1Q2NKJ3 1217 aa17.84■□□□□ 0.45
CCDC28A-202ENST00000611852 C1orf220Q5T0J3 134 aa17.84■□□□□ 0.45
CCDC28A-202ENST00000611852 PDXDC1Q6P996 788 aa17.84■□□□□ 0.45
CCDC28A-202ENST00000611852 DSTYKQ6XUX3 929 aa17.84■□□□□ 0.45
CCDC28A-202ENST00000611852 USP37Q86T82 979 aa17.84■□□□□ 0.45
CCDC28A-202ENST00000611852 LRRC52Q8N7C0 313 aa17.84■□□□□ 0.45
CCDC28A-202ENST00000611852 PABPC5Q96DU9 382 aaKnown RBP17.84■□□□□ 0.45
CCDC28A-202ENST00000611852 ZNF560Q96MR9 790 aa17.84■□□□□ 0.45
CCDC28A-202ENST00000611852 FNIP2Q9P278 1114 aa17.84■□□□□ 0.45
CCDC28A-202ENST00000611852 RWDD2AQ9UIY3 292 aa17.84■□□□□ 0.45
CCDC28A-202ENST00000611852 PCDHB8Q9UN66 801 aa17.84■□□□□ 0.45
CCDC28A-202ENST00000611852 FSD2A1L4K1 749 aa17.83■□□□□ 0.45
CCDC28A-202ENST00000611852 IKBKBO14920 756 aa17.83■□□□□ 0.45
CCDC28A-202ENST00000611852 LINC01565O15544 149 aa17.83■□□□□ 0.45
CCDC28A-202ENST00000611852 SLC34A2O95436 690 aa17.83■□□□□ 0.45
CCDC28A-202ENST00000611852 GLP2RO95838 553 aa17.83■□□□□ 0.45
CCDC28A-202ENST00000611852 EPB41P11171 864 aaKnown RBP17.83■□□□□ 0.45
CCDC28A-202ENST00000611852 RPL17P18621 184 aaKnown RBP17.83■□□□□ 0.45
CCDC28A-202ENST00000611852 RBM10P98175 930 aaKnown RBP17.83■□□□□ 0.45
CCDC28A-202ENST00000611852 CREMQ03060 361 aa17.83■□□□□ 0.45
CCDC28A-202ENST00000611852 SV2CQ496J9 727 aa17.83■□□□□ 0.45
CCDC28A-202ENST00000611852 ANKS3Q6ZW76 656 aa17.83■□□□□ 0.45
CCDC28A-202ENST00000611852 VN1R2Q8NFZ6 395 aa17.83■□□□□ 0.45
CCDC28A-202ENST00000611852 SENP8Q96LD8 212 aa17.83■□□□□ 0.45
CCDC28A-202ENST00000611852 CEP63Q96MT8 703 aa17.83■□□□□ 0.45
CCDC28A-202ENST00000611852 MED15Q96RN5 788 aa17.83■□□□□ 0.45
CCDC28A-202ENST00000611852 PRDM6Q9NQX0 595 aa17.83■□□□□ 0.45
CCDC28A-202ENST00000611852 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP17.82■□□□□ 0.44
CCDC28A-202ENST00000611852 KPNA7A9QM74 516 aa17.82■□□□□ 0.44
CCDC28A-202ENST00000611852 CST3P01034 146 aaPredicted RBP17.82■□□□□ 0.44
CCDC28A-202ENST00000611852 C4BPAP04003 597 aaKnown RBP17.82■□□□□ 0.44
CCDC28A-202ENST00000611852 ADH1AP07327 375 aa17.82■□□□□ 0.44
CCDC28A-202ENST00000611852 PTMSP20962 102 aa17.82■□□□□ 0.44
CCDC28A-202ENST00000611852 KLRC2P26717 231 aa17.82■□□□□ 0.44
CCDC28A-202ENST00000611852 MRPL58Q14197 206 aaKnown RBP17.82■□□□□ 0.44
CCDC28A-202ENST00000611852 KLHL40Q2TBA0 621 aa17.82■□□□□ 0.44
CCDC28A-202ENST00000611852 VARS2Q5ST30 1063 aaKnown RBP17.82■□□□□ 0.44
CCDC28A-202ENST00000611852 TDRD10Q5VZ19 366 aaKnown RBP17.82■□□□□ 0.44
CCDC28A-202ENST00000611852 FILIP1Q7Z7B0 1213 aa17.82■□□□□ 0.44
CCDC28A-202ENST00000611852 APPL2Q8NEU8 664 aa17.82■□□□□ 0.44
CCDC28A-202ENST00000611852 CLSTN3Q9BQT9 956 aa17.82■□□□□ 0.44
CCDC28A-202ENST00000611852 CLDND1Q9NY35 253 aa17.82■□□□□ 0.44
CCDC28A-202ENST00000611852 MTRRQ9UBK8 725 aa17.82■□□□□ 0.44
CCDC28A-202ENST00000611852 TIMM13Q9Y5L4 95 aaPredicted RBP17.82■□□□□ 0.44
CCDC28A-202ENST00000611852 HCFC2Q9Y5Z7 792 aa17.82■□□□□ 0.44
CCDC28A-202ENST00000611852 TRIM49P0CI25 452 aa17.82■□□□□ 0.44
CCDC28A-202ENST00000611852 TRIM49CP0CI26 452 aa17.82■□□□□ 0.44
CCDC28A-202ENST00000611852 ODC1P11926 461 aa17.82■□□□□ 0.44
CCDC28A-202ENST00000611852 TYMPP19971 482 aa17.82■□□□□ 0.44
CCDC28A-202ENST00000611852 LTBRP36941 435 aa17.82■□□□□ 0.44
CCDC28A-202ENST00000611852 NDUFV1P49821 464 aa17.82■□□□□ 0.44
CCDC28A-202ENST00000611852 CLCN4P51793 760 aa17.82■□□□□ 0.44
CCDC28A-202ENST00000611852 BIRC3Q13489 604 aa17.82■□□□□ 0.44
CCDC28A-202ENST00000611852 CAVIN1Q6NZI2 390 aaKnown RBP17.82■□□□□ 0.44
CCDC28A-202ENST00000611852 TMEM184AQ6ZMB5 413 aa17.82■□□□□ 0.44
CCDC28A-202ENST00000611852 GLYCTKQ8IVS8 523 aa17.82■□□□□ 0.44
CCDC28A-202ENST00000611852 SLC22A17Q8WUG5 538 aa17.82■□□□□ 0.44
CCDC28A-202ENST00000611852 HLA-CQ95604 372 aa17.82■□□□□ 0.44
CCDC28A-202ENST00000611852 HPDLQ96IR7 371 aa17.82■□□□□ 0.44
CCDC28A-202ENST00000611852 UBE2ZQ9H832 354 aaPredicted RBP17.82■□□□□ 0.44
CCDC28A-202ENST00000611852 COG5Q9UP83 839 aa17.82■□□□□ 0.44
CCDC28A-202ENST00000611852 R3HCC1Q9Y3T6 440 aaKnown RBP17.82■□□□□ 0.44
CCDC28A-202ENST00000611852 BACE2Q9Y5Z0 518 aa17.82■□□□□ 0.44
CCDC28A-202ENST00000611852 CYB561D2O14569 222 aa17.81■□□□□ 0.44
CCDC28A-202ENST00000611852 TBC1D4O60343 1298 aa17.81■□□□□ 0.44
CCDC28A-202ENST00000611852 TBX10O75333 385 aa17.81■□□□□ 0.44
CCDC28A-202ENST00000611852 OAZ2O95190 189 aa17.81■□□□□ 0.44
CCDC28A-202ENST00000611852 YWHAHQ04917 246 aaPredicted RBP17.81■□□□□ 0.44
CCDC28A-202ENST00000611852 DLX2Q07687 328 aaPredicted RBP17.81■□□□□ 0.44
CCDC28A-202ENST00000611852 PPP3CAQ08209 521 aa17.81■□□□□ 0.44
CCDC28A-202ENST00000611852 MYO1EQ12965 1108 aa17.81■□□□□ 0.44
CCDC28A-202ENST00000611852 ZACNQ401N2 412 aa17.81■□□□□ 0.44
CCDC28A-202ENST00000611852 LLGL2Q6P1M3 1020 aa17.81■□□□□ 0.44
CCDC28A-202ENST00000611852 RSPO2Q6UXX9 243 aaPredicted RBP17.81■□□□□ 0.44
CCDC28A-202ENST00000611852 C15orf39Q6ZRI6 1047 aa17.81■□□□□ 0.44
CCDC28A-202ENST00000611852 EP400NLQ6ZTU2 488 aa17.81■□□□□ 0.44
CCDC28A-202ENST00000611852 SV2AQ7L0J3 742 aa17.81■□□□□ 0.44
CCDC28A-202ENST00000611852 PPFIBP1Q86W92 1011 aa17.81■□□□□ 0.44
CCDC28A-202ENST00000611852 SRRTQ9BXP5 876 aaKnown RBP17.81■□□□□ 0.44
CCDC28A-202ENST00000611852 GDAP2Q9NXN4 497 aa17.81■□□□□ 0.44
CCDC28A-202ENST00000611852 ARMCX3Q9UH62 379 aaPredicted RBP17.81■□□□□ 0.44
CCDC28A-202ENST00000611852 DACH1Q9UI36 760 aa17.81■□□□□ 0.44
CCDC28A-202ENST00000611852 ARHGEF37A1IGU5 675 aa17.8■□□□□ 0.44
CCDC28A-202ENST00000611852 H7C4K7 107 aa17.8■□□□□ 0.44
CCDC28A-202ENST00000611852 ADAM12O43184 909 aa17.8■□□□□ 0.44
CCDC28A-202ENST00000611852 PHACTR2O75167 634 aa17.8■□□□□ 0.44
CCDC28A-202ENST00000611852 CYP11A1P05108 521 aa17.8■□□□□ 0.44
CCDC28A-202ENST00000611852 EPCAMP16422 314 aa17.8■□□□□ 0.44
CCDC28A-202ENST00000611852 ERCC5P28715 1186 aaPredicted RBP17.8■□□□□ 0.44
CCDC28A-202ENST00000611852 TRPC3Q13507 836 aa17.8■□□□□ 0.44
CCDC28A-202ENST00000611852 SASS6Q6UVJ0 657 aa17.8■□□□□ 0.44
CCDC28A-202ENST00000611852 FRMD5Q7Z6J6 570 aa17.8■□□□□ 0.44
CCDC28A-202ENST00000611852 SYAP1Q96A49 352 aaPredicted RBP17.8■□□□□ 0.44
CCDC28A-202ENST00000611852 METTL14Q9HCE5 456 aaKnown RBP17.8■□□□□ 0.44
CCDC28A-202ENST00000611852 CLEC1BQ9P126 229 aa17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms