RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 NFICP08651 508 aa17.53■□□□□ 0.4
LSM4-206ENST00000600289 PRR29P0C7W0 189 aa17.53■□□□□ 0.4
LSM4-206ENST00000600289 BRCC3P46736 316 aa17.53■□□□□ 0.4
LSM4-206ENST00000600289 STK4Q13043 487 aa17.53■□□□□ 0.4
LSM4-206ENST00000600289 SNW1Q13573 536 aaKnown RBP17.53■□□□□ 0.4
LSM4-206ENST00000600289 KCNB1Q14721 858 aa17.53■□□□□ 0.4
LSM4-206ENST00000600289 KNOP1Q1ED39 458 aaKnown RBP17.53■□□□□ 0.4
LSM4-206ENST00000600289 LILRA6Q6PI73 481 aa17.53■□□□□ 0.4
LSM4-206ENST00000600289 ELMSAN1Q6PJG2 1045 aa17.53■□□□□ 0.4
LSM4-206ENST00000600289 ANKS3Q6ZW76 656 aa17.53■□□□□ 0.4
LSM4-206ENST00000600289 GOLGA5Q8TBA6 731 aa17.53■□□□□ 0.4
LSM4-206ENST00000600289 CCDC47Q96A33 483 aaKnown RBP17.53■□□□□ 0.4
LSM4-206ENST00000600289 SAAL1Q96ER3 474 aa17.53■□□□□ 0.4
LSM4-206ENST00000600289 TIGD1Q96MW7 591 aa17.53■□□□□ 0.4
LSM4-206ENST00000600289 SFXN1Q9H9B4 322 aa17.53■□□□□ 0.4
LSM4-206ENST00000600289 RBAKQ9NYW8 714 aaPredicted RBP17.53■□□□□ 0.4
LSM4-206ENST00000600289 USP15Q9Y4E8 981 aaPredicted RBP17.53■□□□□ 0.4
LSM4-206ENST00000600289 NUB1Q9Y5A7 615 aa17.53■□□□□ 0.4
LSM4-206ENST00000600289 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.52■□□□□ 0.4
LSM4-206ENST00000600289 PIRO00625 290 aa17.52■□□□□ 0.4
LSM4-206ENST00000600289 TKTP29401 623 aaKnown RBP17.52■□□□□ 0.4
LSM4-206ENST00000600289 AVPR2P30518 371 aa17.52■□□□□ 0.4
LSM4-206ENST00000600289 MRPL58Q14197 206 aaKnown RBP17.52■□□□□ 0.4
LSM4-206ENST00000600289 PRSS55Q6UWB4 352 aaPredicted RBP17.52■□□□□ 0.4
LSM4-206ENST00000600289 HS2ST1Q7LGA3 356 aa17.52■□□□□ 0.4
LSM4-206ENST00000600289 EFCAB13Q8IY85 973 aa17.52■□□□□ 0.4
LSM4-206ENST00000600289 ELOA2Q8IYF1 753 aaPredicted RBP17.52■□□□□ 0.4
LSM4-206ENST00000600289 ZSWIM2Q8NEG5 633 aa17.52■□□□□ 0.4
LSM4-206ENST00000600289 CMASQ8NFW8 434 aaPredicted RBP17.52■□□□□ 0.4
LSM4-206ENST00000600289 FAM212AQ96EL1 285 aa17.52■□□□□ 0.4
LSM4-206ENST00000600289 ASIC4Q96FT7 647 aa17.52■□□□□ 0.4
LSM4-206ENST00000600289 CLSTN3Q9BQT9 956 aa17.52■□□□□ 0.4
LSM4-206ENST00000600289 ADAM7Q9H2U9 754 aa17.52■□□□□ 0.4
LSM4-206ENST00000600289 PLEKHA4Q9H4M7 779 aa17.52■□□□□ 0.4
LSM4-206ENST00000600289 HSPBP1Q9NZL4 362 aa17.52■□□□□ 0.4
LSM4-206ENST00000600289 PCDHB8Q9UN66 801 aa17.52■□□□□ 0.4
LSM4-206ENST00000600289 MED19A0JLT2 244 aaPredicted RBP17.51■□□□□ 0.39
LSM4-206ENST00000600289 MCM4P33991 863 aa17.51■□□□□ 0.39
LSM4-206ENST00000600289 SURF1Q15526 300 aa17.51■□□□□ 0.39
LSM4-206ENST00000600289 C9orf57Q5W0N0 161 aa17.51■□□□□ 0.39
LSM4-206ENST00000600289 CYP26C1Q6V0L0 522 aa17.51■□□□□ 0.39
LSM4-206ENST00000600289 CEP57Q86XR8 500 aa17.51■□□□□ 0.39
LSM4-206ENST00000600289 NELFCDQ8IXH7 590 aa17.51■□□□□ 0.39
LSM4-206ENST00000600289 NECTIN4Q96NY8 510 aa17.51■□□□□ 0.39
LSM4-206ENST00000600289 PCIF1Q9H4Z3 704 aa17.51■□□□□ 0.39
LSM4-206ENST00000600289 MAN1C1Q9NR34 630 aa17.51■□□□□ 0.39
LSM4-206ENST00000600289 ZNF233A6NK53 670 aa17.5■□□□□ 0.39
LSM4-206ENST00000600289 I3L4J1 428 aa17.5■□□□□ 0.39
LSM4-206ENST00000600289 TGM5O43548 720 aa17.5■□□□□ 0.39
LSM4-206ENST00000600289 TBC1D4O60343 1298 aa17.5■□□□□ 0.39
LSM4-206ENST00000600289 KIF20AO95235 890 aa17.5■□□□□ 0.39
LSM4-206ENST00000600289 RPL17P18621 184 aaKnown RBP17.5■□□□□ 0.39
LSM4-206ENST00000600289 WNT7BP56706 349 aa17.5■□□□□ 0.39
LSM4-206ENST00000600289 RAB33AQ14088 237 aa17.5■□□□□ 0.39
LSM4-206ENST00000600289 CBX2Q14781 532 aaPredicted RBP17.5■□□□□ 0.39
LSM4-206ENST00000600289 VARS2Q5ST30 1063 aaKnown RBP17.5■□□□□ 0.39
LSM4-206ENST00000600289 SLC8B1Q6J4K2 584 aa17.5■□□□□ 0.39
LSM4-206ENST00000600289 CES5AQ6NT32 575 aa17.5■□□□□ 0.39
LSM4-206ENST00000600289 C15orf39Q6ZRI6 1047 aa17.5■□□□□ 0.39
LSM4-206ENST00000600289 SLC9A9Q8IVB4 645 aa17.5■□□□□ 0.39
LSM4-206ENST00000600289 XXYLT1Q8NBI6 393 aa17.5■□□□□ 0.39
LSM4-206ENST00000600289 APPL2Q8NEU8 664 aa17.5■□□□□ 0.39
LSM4-206ENST00000600289 OXCT2Q9BYC2 517 aaPredicted RBP17.5■□□□□ 0.39
LSM4-206ENST00000600289 KCTD10Q9H3F6 313 aa17.5■□□□□ 0.39
LSM4-206ENST00000600289 DPP3Q9NY33 737 aa17.5■□□□□ 0.39
LSM4-206ENST00000600289 FBXW11Q9UKB1 542 aa17.5■□□□□ 0.39
LSM4-206ENST00000600289 GOLGA8IPA6NC78 632 aa17.49■□□□□ 0.39
LSM4-206ENST00000600289 GOLGA8JA6NMD2 632 aa17.49■□□□□ 0.39
LSM4-206ENST00000600289 LOC730098B7Z3J9 87 aa17.49■□□□□ 0.39
LSM4-206ENST00000600289 H7C4K7 107 aa17.49■□□□□ 0.39
LSM4-206ENST00000600289 PDXKO00764 312 aa17.49■□□□□ 0.39
LSM4-206ENST00000600289 NBL1P41271 181 aa17.49■□□□□ 0.39
LSM4-206ENST00000600289 MTHFRP42898 656 aa17.49■□□□□ 0.39
LSM4-206ENST00000600289 GUCY2FP51841 1108 aa17.49■□□□□ 0.39
LSM4-206ENST00000600289 LILRA4P59901 499 aa17.49■□□□□ 0.39
LSM4-206ENST00000600289 SIGLEC14Q08ET2 396 aa17.49■□□□□ 0.39
LSM4-206ENST00000600289 MYBPC2Q14324 1141 aa17.49■□□□□ 0.39
LSM4-206ENST00000600289 SNRNP35Q16560 246 aaKnown RBP17.49■□□□□ 0.39
LSM4-206ENST00000600289 RTL10Q7L3V2 364 aa17.49■□□□□ 0.39
LSM4-206ENST00000600289 CBWD2Q8IUF1 395 aa17.49■□□□□ 0.39
LSM4-206ENST00000600289 SPATA20Q8TB22 786 aa17.49■□□□□ 0.39
LSM4-206ENST00000600289 CACTINQ8WUQ7 758 aaKnown RBP17.49■□□□□ 0.39
LSM4-206ENST00000600289 PHF7Q9BWX1 381 aaPredicted RBP17.49■□□□□ 0.39
LSM4-206ENST00000600289 ZDHHC7Q9NXF8 308 aa17.49■□□□□ 0.39
LSM4-206ENST00000600289 ARHGEF37A1IGU5 675 aa17.48■□□□□ 0.39
LSM4-206ENST00000600289 PPEF2O14830 753 aa17.48■□□□□ 0.39
LSM4-206ENST00000600289 OAZ2O95190 189 aa17.48■□□□□ 0.39
LSM4-206ENST00000600289 TYMPP19971 482 aa17.48■□□□□ 0.39
LSM4-206ENST00000600289 PNPLA4P41247 253 aa17.48■□□□□ 0.39
LSM4-206ENST00000600289 NFIL3Q16649 462 aa17.48■□□□□ 0.39
LSM4-206ENST00000600289 RARS2Q5T160 578 aaKnown RBP17.48■□□□□ 0.39
LSM4-206ENST00000600289 ZNF280DQ6N043 979 aa17.48■□□□□ 0.39
LSM4-206ENST00000600289 RSPO2Q6UXX9 243 aaPredicted RBP17.48■□□□□ 0.39
LSM4-206ENST00000600289 GPR149Q86SP6 731 aa17.48■□□□□ 0.39
LSM4-206ENST00000600289 PALB2Q86YC2 1186 aa17.48■□□□□ 0.39
LSM4-206ENST00000600289 TMEM130Q8N3G9 435 aa17.48■□□□□ 0.39
LSM4-206ENST00000600289 GUF1Q8N442 669 aaKnown RBP17.48■□□□□ 0.39
LSM4-206ENST00000600289 CXorf38Q8TB03 319 aa17.48■□□□□ 0.39
LSM4-206ENST00000600289 RIPOR3Q96MK2 946 aa17.48■□□□□ 0.39
LSM4-206ENST00000600289 ZNF560Q96MR9 790 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms