RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 LRRIQ3A6PVS8 624 aaPredicted RBP21.07■□□□□ 0.96
SHKBP1-221ENST00000599833 TGM5O43548 720 aa21.07■□□□□ 0.96
SHKBP1-221ENST00000599833 TRAPPC3O43617 180 aa21.07■□□□□ 0.96
SHKBP1-221ENST00000599833 CALUO43852 315 aaPredicted RBP21.07■□□□□ 0.96
SHKBP1-221ENST00000599833 C1RP00736 705 aa21.07■□□□□ 0.96
SHKBP1-221ENST00000599833 MCM4P33991 863 aa21.07■□□□□ 0.96
SHKBP1-221ENST00000599833 CA8P35219 290 aa21.07■□□□□ 0.96
SHKBP1-221ENST00000599833 BMS1Q14692 1282 aaKnown RBP21.07■□□□□ 0.96
SHKBP1-221ENST00000599833 SURF1Q15526 300 aa21.07■□□□□ 0.96
SHKBP1-221ENST00000599833 KIAA1841Q6NSI8 718 aa21.07■□□□□ 0.96
SHKBP1-221ENST00000599833 SENP8Q96LD8 212 aa21.07■□□□□ 0.96
SHKBP1-221ENST00000599833 ITGA11Q9UKX5 1188 aa21.07■□□□□ 0.96
SHKBP1-221ENST00000599833 NUB1Q9Y5A7 615 aa21.07■□□□□ 0.96
SHKBP1-221ENST00000599833 DENND4AQ7Z401 1863 aa21.07■□□□□ 0.96
SHKBP1-221ENST00000599833 TRIM49BA6NDI0 452 aa21.06■□□□□ 0.96
SHKBP1-221ENST00000599833 MAPK13O15264 365 aa21.06■□□□□ 0.96
SHKBP1-221ENST00000599833 CYP11A1P05108 521 aa21.06■□□□□ 0.96
SHKBP1-221ENST00000599833 NR2F2P24468 414 aa21.06■□□□□ 0.96
SHKBP1-221ENST00000599833 KLRC2P26717 231 aa21.06■□□□□ 0.96
SHKBP1-221ENST00000599833 POLR2BP30876 1174 aaKnown RBP21.06■□□□□ 0.96
SHKBP1-221ENST00000599833 NDUFV1P49821 464 aa21.06■□□□□ 0.96
SHKBP1-221ENST00000599833 ANKRD40Q6AI12 368 aa21.06■□□□□ 0.96
SHKBP1-221ENST00000599833 SLC8B1Q6J4K2 584 aa21.06■□□□□ 0.96
SHKBP1-221ENST00000599833 TRAPPC11Q7Z392 1133 aa21.06■□□□□ 0.96
SHKBP1-221ENST00000599833 SUSD6Q92537 303 aa21.06■□□□□ 0.96
SHKBP1-221ENST00000599833 TIMM13Q9Y5L4 95 aaPredicted RBP21.06■□□□□ 0.96
SHKBP1-221ENST00000599833 DOCK6Q96HP0 2047 aa21.05■□□□□ 0.96
SHKBP1-221ENST00000599833 BIN1O00499 593 aa21.05■□□□□ 0.96
SHKBP1-221ENST00000599833 MBTPS2O43462 519 aa21.05■□□□□ 0.96
SHKBP1-221ENST00000599833 OAZ2O95190 189 aa21.05■□□□□ 0.96
SHKBP1-221ENST00000599833 CST3P01034 146 aaPredicted RBP21.05■□□□□ 0.96
SHKBP1-221ENST00000599833 ADH1AP07327 375 aa21.05■□□□□ 0.96
SHKBP1-221ENST00000599833 DLATP10515 647 aaKnown RBP21.05■□□□□ 0.96
SHKBP1-221ENST00000599833 CREMQ03060 361 aa21.05■□□□□ 0.96
SHKBP1-221ENST00000599833 RAB33AQ14088 237 aa21.05■□□□□ 0.96
SHKBP1-221ENST00000599833 CLUL1Q15846 466 aa21.05■□□□□ 0.96
SHKBP1-221ENST00000599833 C15orf39Q6ZRI6 1047 aa21.05■□□□□ 0.96
SHKBP1-221ENST00000599833 ANKS3Q6ZW76 656 aa21.05■□□□□ 0.96
SHKBP1-221ENST00000599833 LIMS2Q7Z4I7 341 aa21.05■□□□□ 0.96
SHKBP1-221ENST00000599833 PPFIBP1Q86W92 1011 aa21.05■□□□□ 0.96
SHKBP1-221ENST00000599833 LRRC52Q8N7C0 313 aa21.05■□□□□ 0.96
SHKBP1-221ENST00000599833 CACTINQ8WUQ7 758 aaKnown RBP21.05■□□□□ 0.96
SHKBP1-221ENST00000599833 CASP10Q92851 521 aa21.05■□□□□ 0.96
SHKBP1-221ENST00000599833 CCDC127Q96BQ5 260 aa21.05■□□□□ 0.96
SHKBP1-221ENST00000599833 MED15Q96RN5 788 aa21.05■□□□□ 0.96
SHKBP1-221ENST00000599833 DUSP9Q99956 384 aaKnown RBP21.05■□□□□ 0.96
SHKBP1-221ENST00000599833 RTP3Q9BQQ7 232 aa21.05■□□□□ 0.96
SHKBP1-221ENST00000599833 GTPBP4Q9BZE4 634 aaKnown RBP21.05■□□□□ 0.96
SHKBP1-221ENST00000599833 CD207Q9UJ71 328 aa21.05■□□□□ 0.96
SHKBP1-221ENST00000599833 CDH22Q9UJ99 828 aa21.05■□□□□ 0.96
SHKBP1-221ENST00000599833 AGAP1Q9UPQ3 857 aa21.05■□□□□ 0.96
SHKBP1-221ENST00000599833 C4BPAP04003 597 aaKnown RBP21.04■□□□□ 0.96
SHKBP1-221ENST00000599833 IL9P15248 144 aa21.04■□□□□ 0.96
SHKBP1-221ENST00000599833 TYMPP19971 482 aa21.04■□□□□ 0.96
SHKBP1-221ENST00000599833 PAX3P23760 479 aa21.04■□□□□ 0.96
SHKBP1-221ENST00000599833 CCNE1P24864 410 aa21.04■□□□□ 0.96
SHKBP1-221ENST00000599833 TAF6P49848 677 aa21.04■□□□□ 0.96
SHKBP1-221ENST00000599833 DUOXA2Q1HG44 320 aa21.04■□□□□ 0.96
SHKBP1-221ENST00000599833 TDRD10Q5VZ19 366 aaKnown RBP21.04■□□□□ 0.96
SHKBP1-221ENST00000599833 TTI2Q6NXR4 508 aa21.04■□□□□ 0.96
SHKBP1-221ENST00000599833 PDXDC1Q6P996 788 aa21.04■□□□□ 0.96
SHKBP1-221ENST00000599833 PALB2Q86YC2 1186 aa21.04■□□□□ 0.96
SHKBP1-221ENST00000599833 GLYCTKQ8IVS8 523 aa21.04■□□□□ 0.96
SHKBP1-221ENST00000599833 CSGALNACT2Q8N6G5 542 aa21.04■□□□□ 0.96
SHKBP1-221ENST00000599833 EEF2KMTQ96G04 330 aa21.04■□□□□ 0.96
SHKBP1-221ENST00000599833 FBXL5Q9UKA1 691 aa21.04■□□□□ 0.96
SHKBP1-221ENST00000599833 FBXW11Q9UKB1 542 aa21.04■□□□□ 0.96
SHKBP1-221ENST00000599833 CDY1Q9Y6F8 540 aa21.04■□□□□ 0.96
SHKBP1-221ENST00000599833 WDR27A2RRH5 827 aa21.03■□□□□ 0.96
SHKBP1-221ENST00000599833 VNN2O95498 520 aa21.03■□□□□ 0.96
SHKBP1-221ENST00000599833 TMEM191BP0C7N4 346 aa21.03■□□□□ 0.96
SHKBP1-221ENST00000599833 OR1D2P34982 312 aa21.03■□□□□ 0.96
SHKBP1-221ENST00000599833 ROR1Q01973 937 aa21.03■□□□□ 0.96
SHKBP1-221ENST00000599833 ADAM9Q13443 819 aa21.03■□□□□ 0.96
SHKBP1-221ENST00000599833 SMAD4Q13485 552 aaKnown RBP21.03■□□□□ 0.96
SHKBP1-221ENST00000599833 TJAP1Q5JTD0 557 aa21.03■□□□□ 0.96
SHKBP1-221ENST00000599833 CEP135Q66GS9 1140 aa21.03■□□□□ 0.96
SHKBP1-221ENST00000599833 PTCRAQ6ISU1 281 aaPredicted RBP21.03■□□□□ 0.96
SHKBP1-221ENST00000599833 FOXR2Q6PJQ5 311 aa21.03■□□□□ 0.96
SHKBP1-221ENST00000599833 EP400NLQ6ZTU2 488 aa21.03■□□□□ 0.96
SHKBP1-221ENST00000599833 C12orf76Q8N812 135 aaPredicted RBP21.03■□□□□ 0.96
SHKBP1-221ENST00000599833 TRIML1Q8N9V2 468 aa21.03■□□□□ 0.96
SHKBP1-221ENST00000599833 TMC2Q8TDI7 906 aa21.03■□□□□ 0.96
SHKBP1-221ENST00000599833 ANKRD36BP1Q96IX9 119 aa21.03■□□□□ 0.96
SHKBP1-221ENST00000599833 XYLT2Q9H1B5 865 aa21.03■□□□□ 0.96
SHKBP1-221ENST00000599833 GDAP2Q9NXN4 497 aa21.03■□□□□ 0.96
SHKBP1-221ENST00000599833 NOTCH4Q99466 2003 aa21.03■□□□□ 0.96
SHKBP1-221ENST00000599833 CUL9Q8IWT3 2517 aa21.03■□□□□ 0.96
SHKBP1-221ENST00000599833 KPNA7A9QM74 516 aa21.02■□□□□ 0.96
SHKBP1-221ENST00000599833 ABLIM3O94929 683 aa21.02■□□□□ 0.96
SHKBP1-221ENST00000599833 VNN1O95497 513 aa21.02■□□□□ 0.96
SHKBP1-221ENST00000599833 GLUD1P00367 558 aa21.02■□□□□ 0.96
SHKBP1-221ENST00000599833 SPATA31D3P0C874 917 aa21.02■□□□□ 0.96
SHKBP1-221ENST00000599833 HOXB8P17481 243 aaPredicted RBP21.02■□□□□ 0.96
SHKBP1-221ENST00000599833 LRRC63Q05C16 580 aa21.02■□□□□ 0.96
SHKBP1-221ENST00000599833 ENPEPQ07075 957 aa21.02■□□□□ 0.96
SHKBP1-221ENST00000599833 SMAD2Q15796 467 aaKnown RBP21.02■□□□□ 0.96
SHKBP1-221ENST00000599833 RBM43Q6ZSC3 357 aaKnown RBP21.02■□□□□ 0.96
SHKBP1-221ENST00000599833 SPATA31D4Q6ZUB0 917 aa21.02■□□□□ 0.96
SHKBP1-221ENST00000599833 APPL2Q8NEU8 664 aa21.02■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms