RNA–Protein interactions for RNA: ENST00000585466.1

CLIP3-202, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 2

Gene CLIP3, Length 368 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-202ENST00000585466 LRRC27Q9C0I9 530 aa16.44■□□□□ 0.22
CLIP3-202ENST00000585466 FAM13BQ9NYF5 915 aa16.44■□□□□ 0.22
CLIP3-202ENST00000585466 SERTAD1Q9UHV2 236 aa16.44■□□□□ 0.22
CLIP3-202ENST00000585466 TIMM13Q9Y5L4 95 aaPredicted RBP16.44■□□□□ 0.22
CLIP3-202ENST00000585466 GOLGA8IPA6NC78 632 aa16.43■□□□□ 0.22
CLIP3-202ENST00000585466 GOLGA8JA6NMD2 632 aa16.43■□□□□ 0.22
CLIP3-202ENST00000585466 H7C4K7 107 aa16.43■□□□□ 0.22
CLIP3-202ENST00000585466 TGFB1I1O43294 461 aa16.43■□□□□ 0.22
CLIP3-202ENST00000585466 XPOTO43592 962 aaKnown RBP16.43■□□□□ 0.22
CLIP3-202ENST00000585466 SLFN14P0C7P3 912 aa16.43■□□□□ 0.22
CLIP3-202ENST00000585466 ATF2P15336 505 aa16.43■□□□□ 0.22
CLIP3-202ENST00000585466 PFKFB1P16118 471 aa16.43■□□□□ 0.22
CLIP3-202ENST00000585466 TYMPP19971 482 aa16.43■□□□□ 0.22
CLIP3-202ENST00000585466 CMA1P23946 247 aa16.43■□□□□ 0.22
CLIP3-202ENST00000585466 AMPD3Q01432 767 aa16.43■□□□□ 0.22
CLIP3-202ENST00000585466 CTXN3Q4LDR2 81 aa16.43■□□□□ 0.22
CLIP3-202ENST00000585466 LIN9Q5TKA1 542 aa16.43■□□□□ 0.22
CLIP3-202ENST00000585466 ZNF280DQ6N043 979 aa16.43■□□□□ 0.22
CLIP3-202ENST00000585466 RTL10Q7L3V2 364 aa16.43■□□□□ 0.22
CLIP3-202ENST00000585466 GRASPQ7Z6J2 395 aaPredicted RBP16.43■□□□□ 0.22
CLIP3-202ENST00000585466 TCEAL8Q8IYN2 117 aa16.43■□□□□ 0.22
CLIP3-202ENST00000585466 APPL2Q8NEU8 664 aa16.43■□□□□ 0.22
CLIP3-202ENST00000585466 SCFD1Q8WVM8 642 aa16.43■□□□□ 0.22
CLIP3-202ENST00000585466 SENP8Q96LD8 212 aa16.43■□□□□ 0.22
CLIP3-202ENST00000585466 TMEM206Q9H813 350 aa16.43■□□□□ 0.22
CLIP3-202ENST00000585466 KCNK12Q9HB15 430 aa16.43■□□□□ 0.22
CLIP3-202ENST00000585466 HCFC1R1Q9NWW0 138 aa16.43■□□□□ 0.22
CLIP3-202ENST00000585466 DNMT3BQ9UBC3 853 aaKnown RBP16.43■□□□□ 0.22
CLIP3-202ENST00000585466 PTPRJQ12913 1337 aa16.43■□□□□ 0.22
CLIP3-202ENST00000585466 A0A1B0GVL5 298 aa16.42■□□□□ 0.22
CLIP3-202ENST00000585466 NRG2O14511 850 aaPredicted RBP16.42■□□□□ 0.22
CLIP3-202ENST00000585466 EXTL3O43909 919 aa16.42■□□□□ 0.22
CLIP3-202ENST00000585466 IL18RAPO95256 599 aa16.42■□□□□ 0.22
CLIP3-202ENST00000585466 AFMP43652 599 aa16.42■□□□□ 0.22
CLIP3-202ENST00000585466 KRT85P78386 507 aa16.42■□□□□ 0.22
CLIP3-202ENST00000585466 BMT2Q1RMZ1 405 aa16.42■□□□□ 0.22
CLIP3-202ENST00000585466 NT5DC4Q86YG4 428 aa16.42■□□□□ 0.22
CLIP3-202ENST00000585466 RSAD2Q8WXG1 361 aa16.42■□□□□ 0.22
CLIP3-202ENST00000585466 ACSF2Q96CM8 615 aaPredicted RBP16.42■□□□□ 0.22
CLIP3-202ENST00000585466 SPATA32Q96LK8 384 aa16.42■□□□□ 0.22
CLIP3-202ENST00000585466 RTP3Q9BQQ7 232 aa16.42■□□□□ 0.22
CLIP3-202ENST00000585466 CRISPLD1Q9H336 500 aa16.42■□□□□ 0.22
CLIP3-202ENST00000585466 PCIF1Q9H4Z3 704 aa16.42■□□□□ 0.22
CLIP3-202ENST00000585466 PIDD1Q9HB75 910 aa16.42■□□□□ 0.22
CLIP3-202ENST00000585466 DPP3Q9NY33 737 aa16.42■□□□□ 0.22
CLIP3-202ENST00000585466 PVALEFA0A1B0GWK0 134 aa16.41■□□□□ 0.22
CLIP3-202ENST00000585466 ANHXE9PGG2 379 aa16.41■□□□□ 0.22
CLIP3-202ENST00000585466 PDGFBP01127 241 aaPredicted RBP16.41■□□□□ 0.22
CLIP3-202ENST00000585466 CYP11A1P05108 521 aa16.41■□□□□ 0.22
CLIP3-202ENST00000585466 OR4Q2P0C623 313 aa16.41■□□□□ 0.22
CLIP3-202ENST00000585466 LAMP2P13473 410 aa16.41■□□□□ 0.22
CLIP3-202ENST00000585466 YWHAHQ04917 246 aaPredicted RBP16.41■□□□□ 0.22
CLIP3-202ENST00000585466 MTMR3Q13615 1198 aa16.41■□□□□ 0.22
CLIP3-202ENST00000585466 SLC5A9Q2M3M2 681 aa16.41■□□□□ 0.22
CLIP3-202ENST00000585466 TPGS2Q68CL5 300 aa16.41■□□□□ 0.22
CLIP3-202ENST00000585466 RNF19BQ6ZMZ0 732 aa16.41■□□□□ 0.22
CLIP3-202ENST00000585466 GET4Q7L5D6 327 aaPredicted RBP16.41■□□□□ 0.22
CLIP3-202ENST00000585466 CBWD2Q8IUF1 395 aa16.41■□□□□ 0.22
CLIP3-202ENST00000585466 UBALD2Q8IYN6 164 aa16.41■□□□□ 0.22
CLIP3-202ENST00000585466 SYCP3Q8IZU3 236 aa16.41■□□□□ 0.22
CLIP3-202ENST00000585466 C1orf127Q8N9H9 656 aa16.41■□□□□ 0.22
CLIP3-202ENST00000585466 ITFG1Q8TB96 612 aa16.41■□□□□ 0.22
CLIP3-202ENST00000585466 PAGE5Q96GU1 130 aa16.41■□□□□ 0.22
CLIP3-202ENST00000585466 TMEM209Q96SK2 561 aa16.41■□□□□ 0.22
CLIP3-202ENST00000585466 GOLPH3LQ9H4A5 285 aa16.41■□□□□ 0.22
CLIP3-202ENST00000585466 PDE11AQ9HCR9 933 aa16.41■□□□□ 0.22
CLIP3-202ENST00000585466 RBAKQ9NYW8 714 aaPredicted RBP16.41■□□□□ 0.22
CLIP3-202ENST00000585466 AFF4Q9UHB7 1163 aaKnown RBP16.41■□□□□ 0.22
CLIP3-202ENST00000585466 INSL5Q9Y5Q6 135 aa16.41■□□□□ 0.22
CLIP3-202ENST00000585466 UBE4BO95155 1302 aa16.41■□□□□ 0.22
CLIP3-202ENST00000585466 WDFY4Q6ZS81 3184 aa16.4■□□□□ 0.22
CLIP3-202ENST00000585466 LDHAP00338 332 aaKnown RBP16.4■□□□□ 0.22
CLIP3-202ENST00000585466 FSHRP23945 695 aa16.4■□□□□ 0.22
CLIP3-202ENST00000585466 GBP2P32456 591 aaPredicted RBP16.4■□□□□ 0.22
CLIP3-202ENST00000585466 ARPP19P56211 112 aa16.4■□□□□ 0.22
CLIP3-202ENST00000585466 HTR4Q13639 388 aa16.4■□□□□ 0.22
CLIP3-202ENST00000585466 ARMCX5Q6P1M9 558 aa16.4■□□□□ 0.22
CLIP3-202ENST00000585466 GPD1LQ8N335 351 aa16.4■□□□□ 0.22
CLIP3-202ENST00000585466 OR10T2Q8NGX3 314 aa16.4■□□□□ 0.22
CLIP3-202ENST00000585466 GZF1Q9H116 711 aaPredicted RBP16.4■□□□□ 0.22
CLIP3-202ENST00000585466 AVENQ9NQS1 362 aaPredicted RBP16.4■□□□□ 0.22
CLIP3-202ENST00000585466 AGPAT3Q9NRZ7 376 aa16.4■□□□□ 0.22
CLIP3-202ENST00000585466 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.4■□□□□ 0.22
CLIP3-202ENST00000585466 HSPBP1Q9NZL4 362 aa16.4■□□□□ 0.22
CLIP3-202ENST00000585466 SIX4Q9UIU6 781 aa16.4■□□□□ 0.22
CLIP3-202ENST00000585466 NARSO43776 548 aaKnown RBP16.39■□□□□ 0.21
CLIP3-202ENST00000585466 XYLBO75191 536 aa16.39■□□□□ 0.21
CLIP3-202ENST00000585466 PAX3P23760 479 aa16.39■□□□□ 0.21
CLIP3-202ENST00000585466 NDUFA8P51970 172 aa16.39■□□□□ 0.21
CLIP3-202ENST00000585466 ADCY1Q08828 1119 aa16.39■□□□□ 0.21
CLIP3-202ENST00000585466 TDGQ13569 410 aa16.39■□□□□ 0.21
CLIP3-202ENST00000585466 PRSS36Q5K4E3 855 aa16.39■□□□□ 0.21
CLIP3-202ENST00000585466 OVOS1Q6IE37 1185 aa16.39■□□□□ 0.21
CLIP3-202ENST00000585466 DSTYKQ6XUX3 929 aa16.39■□□□□ 0.21
CLIP3-202ENST00000585466 STXBP4Q6ZWJ1 553 aa16.39■□□□□ 0.21
CLIP3-202ENST00000585466 KIAA0895Q8NCT3 520 aa16.39■□□□□ 0.21
CLIP3-202ENST00000585466 FGF13Q92913 245 aa16.39■□□□□ 0.21
CLIP3-202ENST00000585466 PYM1Q9BRP8 204 aaKnown RBP16.39■□□□□ 0.21
CLIP3-202ENST00000585466 CYP4F11Q9HBI6 524 aa16.39■□□□□ 0.21
CLIP3-202ENST00000585466 GDPD2Q9HCC8 539 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms