RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 DNAJC9-AS1A6NH13 148 aa5.47□□□□□ -1.53
SMCHD1-208ENST00000583344 TRIM75PA6NK02 468 aa5.47□□□□□ -1.53
SMCHD1-208ENST00000583344 PROM1O43490 865 aa5.47□□□□□ -1.53
SMCHD1-208ENST00000583344 IARSP41252 1262 aaKnown RBP5.47□□□□□ -1.53
SMCHD1-208ENST00000583344 WASP42768 502 aa5.47□□□□□ -1.53
SMCHD1-208ENST00000583344 ZNF280AP59817 542 aaPredicted RBP5.47□□□□□ -1.53
SMCHD1-208ENST00000583344 FPGSQ05932 587 aa5.47□□□□□ -1.53
SMCHD1-208ENST00000583344 PABPC1LQ4VXU2 614 aaKnown RBP5.47□□□□□ -1.53
SMCHD1-208ENST00000583344 TSTD2Q5T7W7 516 aa5.47□□□□□ -1.53
SMCHD1-208ENST00000583344 MIGA2Q7L4E1 593 aa5.47□□□□□ -1.53
SMCHD1-208ENST00000583344 JADE3Q92613 823 aa5.47□□□□□ -1.53
SMCHD1-208ENST00000583344 RNF7Q9UBF6 113 aa5.47□□□□□ -1.53
SMCHD1-208ENST00000583344 ENTPD2Q9Y5L3 495 aa5.47□□□□□ -1.53
SMCHD1-208ENST00000583344 CGB1A6NKQ9 187 aa5.46□□□□□ -1.54
SMCHD1-208ENST00000583344 MPPED1O15442 326 aa5.46□□□□□ -1.54
SMCHD1-208ENST00000583344 NDUFS2O75306 463 aa5.46□□□□□ -1.54
SMCHD1-208ENST00000583344 SUN1O94901 812 aa5.46□□□□□ -1.54
SMCHD1-208ENST00000583344 CD1AP06126 327 aa5.46□□□□□ -1.54
SMCHD1-208ENST00000583344 CHRM2P08172 466 aa5.46□□□□□ -1.54
SMCHD1-208ENST00000583344 MTHFD1P11586 935 aaKnown RBP5.46□□□□□ -1.54
SMCHD1-208ENST00000583344 GRIA3P42263 894 aa5.46□□□□□ -1.54
SMCHD1-208ENST00000583344 RPS7P62081 194 aaKnown RBP5.46□□□□□ -1.54
SMCHD1-208ENST00000583344 CDC42EP1Q00587 391 aa5.46□□□□□ -1.54
SMCHD1-208ENST00000583344 PREPLQ4J6C6 727 aaPredicted RBP5.46□□□□□ -1.54
SMCHD1-208ENST00000583344 GRASPQ7Z6J2 395 aaPredicted RBP5.46□□□□□ -1.54
SMCHD1-208ENST00000583344 AMIGO2Q86SJ2 522 aa5.46□□□□□ -1.54
SMCHD1-208ENST00000583344 ADGRG5Q8IZF4 528 aa5.46□□□□□ -1.54
SMCHD1-208ENST00000583344 CNTD1Q8N815 330 aa5.46□□□□□ -1.54
SMCHD1-208ENST00000583344 TMIEQ8NEW7 156 aa5.46□□□□□ -1.54
SMCHD1-208ENST00000583344 MYCBPAPQ8TBZ2 947 aa5.46□□□□□ -1.54
SMCHD1-208ENST00000583344 SARAFQ96BY9 339 aa5.46□□□□□ -1.54
SMCHD1-208ENST00000583344 LRIG1Q96JA1 1093 aa5.46□□□□□ -1.54
SMCHD1-208ENST00000583344 PACSIN1Q9BY11 444 aa5.46□□□□□ -1.54
SMCHD1-208ENST00000583344 SAP30BPQ9UHR5 308 aaKnown RBP5.46□□□□□ -1.54
SMCHD1-208ENST00000583344 COL3A1P02461 1466 aaPredicted RBP5.45□□□□□ -1.54
SMCHD1-208ENST00000583344 PHLDB1Q86UU1 1377 aa5.45□□□□□ -1.54
SMCHD1-208ENST00000583344 WIPF3A6NGB9 483 aa5.45□□□□□ -1.54
SMCHD1-208ENST00000583344 ADM5C9JUS6 153 aa5.45□□□□□ -1.54
SMCHD1-208ENST00000583344 TOR1BO14657 336 aa5.45□□□□□ -1.54
SMCHD1-208ENST00000583344 MT-CO1P00395 513 aa5.45□□□□□ -1.54
SMCHD1-208ENST00000583344 PPP3CBP16298 524 aa5.45□□□□□ -1.54
SMCHD1-208ENST00000583344 C5AR1P21730 350 aa5.45□□□□□ -1.54
SMCHD1-208ENST00000583344 SRSF4Q08170 494 aaKnown RBP5.45□□□□□ -1.54
SMCHD1-208ENST00000583344 ZNF844Q08AG5 666 aa5.45□□□□□ -1.54
SMCHD1-208ENST00000583344 DYRK1AQ13627 763 aa5.45□□□□□ -1.54
SMCHD1-208ENST00000583344 IL10RAQ13651 578 aa5.45□□□□□ -1.54
SMCHD1-208ENST00000583344 ACAP2Q15057 778 aa5.45□□□□□ -1.54
SMCHD1-208ENST00000583344 TXNRD1Q16881 649 aa5.45□□□□□ -1.54
SMCHD1-208ENST00000583344 C3orf36Q3SXR2 165 aa5.45□□□□□ -1.54
SMCHD1-208ENST00000583344 PGM2L1Q6PCE3 622 aa5.45□□□□□ -1.54
SMCHD1-208ENST00000583344 CBARPQ8N350 705 aaPredicted RBP5.45□□□□□ -1.54
SMCHD1-208ENST00000583344 FBXO41Q8TF61 875 aa5.45□□□□□ -1.54
SMCHD1-208ENST00000583344 TIMP4Q99727 224 aa5.45□□□□□ -1.54
SMCHD1-208ENST00000583344 IMPG2Q9BZV3 1241 aa5.45□□□□□ -1.54
SMCHD1-208ENST00000583344 JKAMPQ9P055 326 aa5.45□□□□□ -1.54
SMCHD1-208ENST00000583344 ST3GAL5Q9UNP4 418 aa5.45□□□□□ -1.54
SMCHD1-208ENST00000583344 CCDC195A0A1B0GUA6 201 aa5.44□□□□□ -1.54
SMCHD1-208ENST00000583344 MANSC4A6NHS7 340 aaPredicted RBP5.44□□□□□ -1.54
SMCHD1-208ENST00000583344 LINC00473A8K010 186 aa5.44□□□□□ -1.54
SMCHD1-208ENST00000583344 ORC4O43929 436 aa5.44□□□□□ -1.54
SMCHD1-208ENST00000583344 GPD1P21695 349 aa5.44□□□□□ -1.54
SMCHD1-208ENST00000583344 ANXA11P50995 505 aaKnown RBP5.44□□□□□ -1.54
SMCHD1-208ENST00000583344 INAVAQ3KP66 663 aa5.44□□□□□ -1.54
SMCHD1-208ENST00000583344 ZNF365Q70YC5 407 aa5.44□□□□□ -1.54
SMCHD1-208ENST00000583344 CFAP52Q8N1V2 620 aa5.44□□□□□ -1.54
SMCHD1-208ENST00000583344 PDPRQ8NCN5 879 aa5.44□□□□□ -1.54
SMCHD1-208ENST00000583344 IL17RDQ8NFM7 739 aa5.44□□□□□ -1.54
SMCHD1-208ENST00000583344 DDB2Q92466 427 aa5.44□□□□□ -1.54
SMCHD1-208ENST00000583344 SNX19Q92543 992 aa5.44□□□□□ -1.54
SMCHD1-208ENST00000583344 KAT5Q92993 513 aa5.44□□□□□ -1.54
SMCHD1-208ENST00000583344 HDAC10Q969S8 669 aa5.44□□□□□ -1.54
SMCHD1-208ENST00000583344 MKS1Q9NXB0 559 aa5.44□□□□□ -1.54
SMCHD1-208ENST00000583344 LIMCH1Q9UPQ0 1083 aa5.44□□□□□ -1.54
SMCHD1-208ENST00000583344 NACADO15069 1562 aa5.43□□□□□ -1.54
SMCHD1-208ENST00000583344 CCDC151A5D8V7 595 aa5.43□□□□□ -1.54
SMCHD1-208ENST00000583344 VWC2LB2RUY7 222 aa5.43□□□□□ -1.54
SMCHD1-208ENST00000583344 HTRA2O43464 458 aaPredicted RBP5.43□□□□□ -1.54
SMCHD1-208ENST00000583344 SLC43A1O75387 559 aa5.43□□□□□ -1.54
SMCHD1-208ENST00000583344 HNRNPMP52272 730 aaKnown RBP eCLIP5.43□□□□□ -1.54
SMCHD1-208ENST00000583344 EXOSC10Q01780 885 aaKnown RBP5.43□□□□□ -1.54
SMCHD1-208ENST00000583344 NBPF8Q3BBV2 869 aa5.43□□□□□ -1.54
SMCHD1-208ENST00000583344 EPHA10Q5JZY3 1008 aa5.43□□□□□ -1.54
SMCHD1-208ENST00000583344 SLC17A8Q8NDX2 589 aa5.43□□□□□ -1.54
SMCHD1-208ENST00000583344 C1orf162Q8NEQ5 155 aaPredicted RBP5.43□□□□□ -1.54
SMCHD1-208ENST00000583344 SSH1Q8WYL5 1049 aa5.43□□□□□ -1.54
SMCHD1-208ENST00000583344 ANKS1AQ92625 1134 aa5.43□□□□□ -1.54
SMCHD1-208ENST00000583344 DPF1Q92782 380 aa5.43□□□□□ -1.54
SMCHD1-208ENST00000583344 MRGPRX4Q96LA9 322 aa5.43□□□□□ -1.54
SMCHD1-208ENST00000583344 SLC29A3Q9BZD2 475 aa5.43□□□□□ -1.54
SMCHD1-208ENST00000583344 SLC5A4Q9NY91 659 aa5.43□□□□□ -1.54
SMCHD1-208ENST00000583344 NEU2Q9Y3R4 380 aa5.43□□□□□ -1.54
SMCHD1-208ENST00000583344 IPPQ9Y573 584 aa5.43□□□□□ -1.54
SMCHD1-208ENST00000583344 UNC13AQ9UPW8 1703 aa5.43□□□□□ -1.54
SMCHD1-208ENST00000583344 CCDC154A6NI56 674 aa5.42□□□□□ -1.54
SMCHD1-208ENST00000583344 E9PLN8 166 aa5.42□□□□□ -1.54
SMCHD1-208ENST00000583344 SGTAO43765 313 aa5.42□□□□□ -1.54
SMCHD1-208ENST00000583344 PCDHGA12O60330 932 aa5.42□□□□□ -1.54
SMCHD1-208ENST00000583344 ERBB2P04626 1255 aa5.42□□□□□ -1.54
SMCHD1-208ENST00000583344 HMGB1P09429 215 aaKnown RBP5.42□□□□□ -1.54
SMCHD1-208ENST00000583344 WT1P19544 449 aaPredicted RBP5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms