RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 H3BUI4 141 aa8.12□□□□□ -1.11
SS18-214ENST00000580003 SPDEFO95238 335 aa8.12□□□□□ -1.11
SS18-214ENST00000580003 SLPIP03973 132 aa8.12□□□□□ -1.11
SS18-214ENST00000580003 PRDX5P30044 214 aa8.12□□□□□ -1.11
SS18-214ENST00000580003 IL12RB1P42701 662 aa8.12□□□□□ -1.11
SS18-214ENST00000580003 PIK3CGP48736 1102 aa8.12□□□□□ -1.11
SS18-214ENST00000580003 TGFB2P61812 414 aa8.12□□□□□ -1.11
SS18-214ENST00000580003 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP8.12□□□□□ -1.11
SS18-214ENST00000580003 PDSS2Q86YH6 399 aa8.12□□□□□ -1.11
SS18-214ENST00000580003 KLHL32Q96NJ5 620 aa8.12□□□□□ -1.11
SS18-214ENST00000580003 TLR10Q9BXR5 811 aa8.12□□□□□ -1.11
SS18-214ENST00000580003 RLIMQ9NVW2 624 aa8.12□□□□□ -1.11
SS18-214ENST00000580003 NR2E3Q9Y5X4 410 aa8.12□□□□□ -1.11
SS18-214ENST00000580003 B3GALT2O43825 422 aa8.11□□□□□ -1.11
SS18-214ENST00000580003 GJB1P08034 283 aa8.11□□□□□ -1.11
SS18-214ENST00000580003 TYRP14679 529 aa8.11□□□□□ -1.11
SS18-214ENST00000580003 PIGFQ07326 219 aa8.11□□□□□ -1.11
SS18-214ENST00000580003 NFE2Q16621 373 aaPredicted RBP8.11□□□□□ -1.11
SS18-214ENST00000580003 LAIR1Q6GTX8 287 aa8.11□□□□□ -1.11
SS18-214ENST00000580003 CXorf57Q6NSI4 855 aaKnown RBP8.11□□□□□ -1.11
SS18-214ENST00000580003 TMIEQ8NEW7 156 aa8.11□□□□□ -1.11
SS18-214ENST00000580003 DIS3LQ8TF46 1054 aaKnown RBP8.11□□□□□ -1.11
SS18-214ENST00000580003 TNPO1Q92973 898 aaKnown RBP8.11□□□□□ -1.11
SS18-214ENST00000580003 MTFMTQ96DP5 389 aaKnown RBP8.11□□□□□ -1.11
SS18-214ENST00000580003 MRIQ9BWK5 157 aa8.11□□□□□ -1.11
SS18-214ENST00000580003 C1orf43Q9BWL3 253 aa8.11□□□□□ -1.11
SS18-214ENST00000580003 KRTAP4-11Q9BYQ6 195 aa8.11□□□□□ -1.11
SS18-214ENST00000580003 TMEM74BQ9NUR3 256 aa8.11□□□□□ -1.11
SS18-214ENST00000580003 TESQ9UGI8 421 aaKnown RBP8.11□□□□□ -1.11
SS18-214ENST00000580003 NOB1Q9ULX3 412 aaKnown RBP8.11□□□□□ -1.11
SS18-214ENST00000580003 STXBP5LQ9Y2K9 1186 aa8.11□□□□□ -1.11
SS18-214ENST00000580003 SCGB1D2O95969 90 aa8.1□□□□□ -1.11
SS18-214ENST00000580003 ALDH2P05091 517 aa8.1□□□□□ -1.11
SS18-214ENST00000580003 LPOP22079 712 aaPredicted RBP8.1□□□□□ -1.11
SS18-214ENST00000580003 ZEB1P37275 1124 aaPredicted RBP8.1□□□□□ -1.11
SS18-214ENST00000580003 USP14P54578 494 aa8.1□□□□□ -1.11
SS18-214ENST00000580003 INHBCP55103 352 aa8.1□□□□□ -1.11
SS18-214ENST00000580003 PSMC1P62191 440 aaKnown RBP8.1□□□□□ -1.11
SS18-214ENST00000580003 TAP1Q03518 808 aa8.1□□□□□ -1.11
SS18-214ENST00000580003 DPTQ07507 201 aa8.1□□□□□ -1.11
SS18-214ENST00000580003 ABHD17BQ5VST6 288 aa8.1□□□□□ -1.11
SS18-214ENST00000580003 FAM90A1Q86YD7 464 aa8.1□□□□□ -1.11
SS18-214ENST00000580003 VRK3Q8IV63 474 aa8.1□□□□□ -1.11
SS18-214ENST00000580003 COLGALT2Q8IYK4 626 aa8.1□□□□□ -1.11
SS18-214ENST00000580003 SCAMP4Q969E2 229 aa8.1□□□□□ -1.11
SS18-214ENST00000580003 CGRRF1Q99675 332 aa8.1□□□□□ -1.11
SS18-214ENST00000580003 ZDHHC8Q9ULC8 765 aa8.1□□□□□ -1.11
SS18-214ENST00000580003 NEU2Q9Y3R4 380 aa8.1□□□□□ -1.11
SS18-214ENST00000580003 PIPSLA2A3N6 862 aa8.09□□□□□ -1.11
SS18-214ENST00000580003 MYADML2A6NDP7 307 aa8.09□□□□□ -1.11
SS18-214ENST00000580003 ZNF785A8K8V0 405 aa8.09□□□□□ -1.11
SS18-214ENST00000580003 ITGAMP11215 1152 aa8.09□□□□□ -1.11
SS18-214ENST00000580003 AVPR1BP47901 424 aa8.09□□□□□ -1.11
SS18-214ENST00000580003 HMGA2P52926 109 aa8.09□□□□□ -1.11
SS18-214ENST00000580003 BLOC1S1P78537 153 aa8.09□□□□□ -1.11
SS18-214ENST00000580003 LRRC41Q15345 812 aa8.09□□□□□ -1.11
SS18-214ENST00000580003 CYP2A13Q16696 494 aa8.09□□□□□ -1.11
SS18-214ENST00000580003 CLNKQ7Z7G1 428 aa8.09□□□□□ -1.11
SS18-214ENST00000580003 MRGPRGQ86SM5 289 aa8.09□□□□□ -1.11
SS18-214ENST00000580003 DENND1CQ8IV53 801 aa8.09□□□□□ -1.11
SS18-214ENST00000580003 PDPRQ8NCN5 879 aa8.09□□□□□ -1.11
SS18-214ENST00000580003 SLC35G2Q8TBE7 412 aa8.09□□□□□ -1.11
SS18-214ENST00000580003 BRIX1Q8TDN6 353 aaKnown RBP8.09□□□□□ -1.11
SS18-214ENST00000580003 SLC35A4Q96G79 324 aa8.09□□□□□ -1.11
SS18-214ENST00000580003 TTPALQ9BTX7 342 aa8.09□□□□□ -1.11
SS18-214ENST00000580003 MRPL46Q9H2W6 279 aaKnown RBP8.09□□□□□ -1.11
SS18-214ENST00000580003 TBCCD1Q9NVR7 557 aa8.09□□□□□ -1.11
SS18-214ENST00000580003 PCDHA1Q9Y5I3 950 aa8.09□□□□□ -1.11
SS18-214ENST00000580003 RAMP2O60895 175 aa8.08□□□□□ -1.12
SS18-214ENST00000580003 RARBP10826 455 aa8.08□□□□□ -1.12
SS18-214ENST00000580003 PHKA1P46020 1223 aa8.08□□□□□ -1.12
SS18-214ENST00000580003 FAM102BQ5T8I3 360 aa8.08□□□□□ -1.12
SS18-214ENST00000580003 EPM2AIP1Q7L775 607 aaPredicted RBP8.08□□□□□ -1.12
SS18-214ENST00000580003 CFAP52Q8N1V2 620 aa8.08□□□□□ -1.12
SS18-214ENST00000580003 SUPT20HQ8NEM7 779 aa8.08□□□□□ -1.12
SS18-214ENST00000580003 KLHDC4Q8TBB5 520 aa8.08□□□□□ -1.12
SS18-214ENST00000580003 ASB10Q8WXI3 467 aa8.08□□□□□ -1.12
SS18-214ENST00000580003 NACC2Q96BF6 587 aa8.08□□□□□ -1.12
SS18-214ENST00000580003 SMOQ99835 787 aa8.08□□□□□ -1.12
SS18-214ENST00000580003 SIK2Q9H0K1 926 aa8.08□□□□□ -1.12
SS18-214ENST00000580003 CCDC195A0A1B0GUA6 201 aa8.07□□□□□ -1.12
SS18-214ENST00000580003 H3BML4 177 aa8.07□□□□□ -1.12
SS18-214ENST00000580003 CHEK2O96017 543 aa8.07□□□□□ -1.12
SS18-214ENST00000580003 GNAI2P04899 355 aa8.07□□□□□ -1.12
SS18-214ENST00000580003 KCNA2P16389 499 aa8.07□□□□□ -1.12
SS18-214ENST00000580003 VAV2P52735 878 aa8.07□□□□□ -1.12
SS18-214ENST00000580003 ZNF135P52742 658 aaPredicted RBP8.07□□□□□ -1.12
SS18-214ENST00000580003 NKX6-1P78426 367 aaPredicted RBP8.07□□□□□ -1.12
SS18-214ENST00000580003 FSTL1Q12841 308 aa8.07□□□□□ -1.12
SS18-214ENST00000580003 PLS1Q14651 629 aa8.07□□□□□ -1.12
SS18-214ENST00000580003 KIF22Q14807 665 aa8.07□□□□□ -1.12
SS18-214ENST00000580003 GEN1Q17RS7 908 aa8.07□□□□□ -1.12
SS18-214ENST00000580003 LDLRAD3Q86YD5 345 aa8.07□□□□□ -1.12
SS18-214ENST00000580003 TAAR9Q96RI9 348 aa8.07□□□□□ -1.12
SS18-214ENST00000580003 SARS2Q9NP81 518 aaKnown RBP8.07□□□□□ -1.12
SS18-214ENST00000580003 ANLNQ9NQW6 1124 aa8.07□□□□□ -1.12
SS18-214ENST00000580003 WDR33Q9C0J8 1336 aaKnown RBP8.06□□□□□ -1.12
SS18-214ENST00000580003 A0A1W2PS29 197 aa8.06□□□□□ -1.12
SS18-214ENST00000580003 FOXN1O15353 648 aa8.06□□□□□ -1.12
SS18-214ENST00000580003 MATN4O95460 622 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms