RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 LIMD1Q9UGP4 676 aa25.87■■□□□ 1.73
SHMT1-206ENST00000579558 TIMM13Q9Y5L4 95 aaPredicted RBP25.87■■□□□ 1.73
SHMT1-206ENST00000579558 UBE4BO95155 1302 aa25.87■■□□□ 1.73
SHMT1-206ENST00000579558 ANO9A1A5B4 782 aa25.86■■□□□ 1.73
SHMT1-206ENST00000579558 WDR27A2RRH5 827 aa25.86■■□□□ 1.73
SHMT1-206ENST00000579558 PRR33A8MZF0 331 aa25.86■■□□□ 1.73
SHMT1-206ENST00000579558 PIRO00625 290 aa25.86■■□□□ 1.73
SHMT1-206ENST00000579558 KIAA0391O15091 583 aaKnown RBP25.86■■□□□ 1.73
SHMT1-206ENST00000579558 CCL16O15467 120 aa25.86■■□□□ 1.73
SHMT1-206ENST00000579558 PAX3P23760 479 aa25.86■■□□□ 1.73
SHMT1-206ENST00000579558 SYKP43405 635 aa25.86■■□□□ 1.73
SHMT1-206ENST00000579558 WNT7BP56706 349 aa25.86■■□□□ 1.73
SHMT1-206ENST00000579558 USP37Q86T82 979 aa25.86■■□□□ 1.73
SHMT1-206ENST00000579558 SLC39A2Q9NP94 309 aa25.86■■□□□ 1.73
SHMT1-206ENST00000579558 POLIQ9UNA4 740 aa25.86■■□□□ 1.73
SHMT1-206ENST00000579558 XYLBO75191 536 aa25.85■■□□□ 1.73
SHMT1-206ENST00000579558 ABLIM3O94929 683 aa25.85■■□□□ 1.73
SHMT1-206ENST00000579558 GBP2P32456 591 aaPredicted RBP25.85■■□□□ 1.73
SHMT1-206ENST00000579558 ELF1P32519 619 aa25.85■■□□□ 1.73
SHMT1-206ENST00000579558 NUCB2P80303 420 aa25.85■■□□□ 1.73
SHMT1-206ENST00000579558 TFAMQ00059 246 aaKnown RBP25.85■■□□□ 1.73
SHMT1-206ENST00000579558 RTL10Q7L3V2 364 aa25.85■■□□□ 1.73
SHMT1-206ENST00000579558 NELFCDQ8IXH7 590 aa25.85■■□□□ 1.73
SHMT1-206ENST00000579558 SCFD1Q8WVM8 642 aa25.85■■□□□ 1.73
SHMT1-206ENST00000579558 SENP8Q96LD8 212 aa25.85■■□□□ 1.73
SHMT1-206ENST00000579558 GDPD2Q9HCC8 539 aa25.85■■□□□ 1.73
SHMT1-206ENST00000579558 FAM237AA0A1B0GTK4 181 aa25.84■■□□□ 1.73
SHMT1-206ENST00000579558 SPTLC1O15269 473 aa25.84■■□□□ 1.73
SHMT1-206ENST00000579558 OAZ2O95190 189 aa25.84■■□□□ 1.73
SHMT1-206ENST00000579558 ASGR2P07307 311 aa25.84■■□□□ 1.73
SHMT1-206ENST00000579558 ODC1P11926 461 aa25.84■■□□□ 1.73
SHMT1-206ENST00000579558 TYMPP19971 482 aa25.84■■□□□ 1.73
SHMT1-206ENST00000579558 SCN1AP35498 2009 aa25.84■■□□□ 1.73
SHMT1-206ENST00000579558 NDUFA8P51970 172 aa25.84■■□□□ 1.73
SHMT1-206ENST00000579558 GRASPQ7Z6J2 395 aaPredicted RBP25.84■■□□□ 1.73
SHMT1-206ENST00000579558 FSIP1Q8NA03 581 aa25.84■■□□□ 1.73
SHMT1-206ENST00000579558 EXOC1Q9NV70 894 aa25.84■■□□□ 1.73
SHMT1-206ENST00000579558 HSPBP1Q9NZL4 362 aa25.84■■□□□ 1.73
SHMT1-206ENST00000579558 MYO10Q9HD67 2058 aa25.83■■□□□ 1.73
SHMT1-206ENST00000579558 A0A1W2PQ27 194 aa25.83■■□□□ 1.73
SHMT1-206ENST00000579558 A0A1W2PQ64 194 aa25.83■■□□□ 1.73
SHMT1-206ENST00000579558 A0A1W2PQD8 194 aa25.83■■□□□ 1.73
SHMT1-206ENST00000579558 ARHGEF37A1IGU5 675 aa25.83■■□□□ 1.73
SHMT1-206ENST00000579558 PRRG1O14668 218 aa25.83■■□□□ 1.73
SHMT1-206ENST00000579558 KLRC4O43908 158 aa25.83■■□□□ 1.73
SHMT1-206ENST00000579558 N4BP1O75113 896 aaKnown RBP25.83■■□□□ 1.73
SHMT1-206ENST00000579558 CPB1P15086 417 aa25.83■■□□□ 1.73
SHMT1-206ENST00000579558 ATF2P15336 505 aa25.83■■□□□ 1.73
SHMT1-206ENST00000579558 TAF6P49848 677 aa25.83■■□□□ 1.73
SHMT1-206ENST00000579558 TPGS2Q68CL5 300 aa25.83■■□□□ 1.73
SHMT1-206ENST00000579558 TRIM67Q6ZTA4 783 aa25.83■■□□□ 1.73
SHMT1-206ENST00000579558 GET4Q7L5D6 327 aaPredicted RBP25.83■■□□□ 1.73
SHMT1-206ENST00000579558 CACTINQ8WUQ7 758 aaKnown RBP25.83■■□□□ 1.73
SHMT1-206ENST00000579558 OXCT2Q9BYC2 517 aaPredicted RBP25.83■■□□□ 1.73
SHMT1-206ENST00000579558 PDE11AQ9HCR9 933 aa25.83■■□□□ 1.73
SHMT1-206ENST00000579558 AGPAT3Q9NRZ7 376 aa25.83■■□□□ 1.73
SHMT1-206ENST00000579558 SORCS3Q9UPU3 1222 aa25.83■■□□□ 1.73
SHMT1-206ENST00000579558 ZNF233A6NK53 670 aa25.82■■□□□ 1.72
SHMT1-206ENST00000579558 TGFB1I1O43294 461 aa25.82■■□□□ 1.72
SHMT1-206ENST00000579558 POU2F2P09086 479 aa25.82■■□□□ 1.72
SHMT1-206ENST00000579558 NTHL1P78549 312 aa25.82■■□□□ 1.72
SHMT1-206ENST00000579558 MTMR3Q13615 1198 aa25.82■■□□□ 1.72
SHMT1-206ENST00000579558 OVOS1Q6IE37 1185 aa25.82■■□□□ 1.72
SHMT1-206ENST00000579558 MYADMQ96S97 322 aa25.82■■□□□ 1.72
SHMT1-206ENST00000579558 CYP4F11Q9HBI6 524 aa25.82■■□□□ 1.72
SHMT1-206ENST00000579558 TECTAO75443 2155 aa25.81■■□□□ 1.72
SHMT1-206ENST00000579558 OR6C75A6NL08 312 aa25.81■■□□□ 1.72
SHMT1-206ENST00000579558 LRG1P02750 347 aa25.81■■□□□ 1.72
SHMT1-206ENST00000579558 MYL1P05976 194 aa25.81■■□□□ 1.72
SHMT1-206ENST00000579558 FSHRP23945 695 aa25.81■■□□□ 1.72
SHMT1-206ENST00000579558 SNRPFP62306 86 aaKnown RBP25.81■■□□□ 1.72
SHMT1-206ENST00000579558 SIGLEC14Q08ET2 396 aa25.81■■□□□ 1.72
SHMT1-206ENST00000579558 BMT2Q1RMZ1 405 aa25.81■■□□□ 1.72
SHMT1-206ENST00000579558 KMT5BQ4FZB7 885 aa25.81■■□□□ 1.72
SHMT1-206ENST00000579558 HS2ST1Q7LGA3 356 aa25.81■■□□□ 1.72
SHMT1-206ENST00000579558 CBWD2Q8IUF1 395 aa25.81■■□□□ 1.72
SHMT1-206ENST00000579558 TCEAL8Q8IYN2 117 aa25.81■■□□□ 1.72
SHMT1-206ENST00000579558 ZNF560Q96MR9 790 aa25.81■■□□□ 1.72
SHMT1-206ENST00000579558 GOLPH3LQ9H4A5 285 aa25.81■■□□□ 1.72
SHMT1-206ENST00000579558 KIAA1586Q9HCI6 787 aa25.81■■□□□ 1.72
SHMT1-206ENST00000579558 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP25.81■■□□□ 1.72
SHMT1-206ENST00000579558 AFF4Q9UHB7 1163 aaKnown RBP25.81■■□□□ 1.72
SHMT1-206ENST00000579558 DOCK6Q96HP0 2047 aa25.81■■□□□ 1.72
SHMT1-206ENST00000579558 TSC2P49815 1807 aa25.81■■□□□ 1.72
SHMT1-206ENST00000579558 TMEM221A6NGB7 291 aa25.8■■□□□ 1.72
SHMT1-206ENST00000579558 M0R296 226 aa25.8■■□□□ 1.72
SHMT1-206ENST00000579558 CLIC2O15247 247 aa25.8■■□□□ 1.72
SHMT1-206ENST00000579558 SEC24AO95486 1093 aa25.8■■□□□ 1.72
SHMT1-206ENST00000579558 POLR2BP30876 1174 aaKnown RBP25.8■■□□□ 1.72
SHMT1-206ENST00000579558 ADCY1Q08828 1119 aa25.8■■□□□ 1.72
SHMT1-206ENST00000579558 SV2CQ496J9 727 aa25.8■■□□□ 1.72
SHMT1-206ENST00000579558 RNF19BQ6ZMZ0 732 aa25.8■■□□□ 1.72
SHMT1-206ENST00000579558 C1orf127Q8N9H9 656 aa25.8■■□□□ 1.72
SHMT1-206ENST00000579558 HCFC1R1Q9NWW0 138 aa25.8■■□□□ 1.72
SHMT1-206ENST00000579558 EPS15L1Q9UBC2 864 aa25.8■■□□□ 1.72
SHMT1-206ENST00000579558 DSEQ9UL01 958 aa25.8■■□□□ 1.72
SHMT1-206ENST00000579558 DOCK8Q8NF50 2099 aa25.79■■□□□ 1.72
SHMT1-206ENST00000579558 CYB561D2O14569 222 aa25.79■■□□□ 1.72
SHMT1-206ENST00000579558 ITGB3P05106 788 aa25.79■■□□□ 1.72
SHMT1-206ENST00000579558 CYP11A1P05108 521 aa25.79■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms