RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 PLEKHA4Q9H4M7 779 aa21.07■□□□□ 0.96
SS18-209ENST00000578595 CGNQ9P2M7 1197 aaKnown RBP21.07■□□□□ 0.96
SS18-209ENST00000578595 HOOK1Q9UJC3 728 aaKnown RBP21.07■□□□□ 0.96
SS18-209ENST00000578595 MAPK8IP1Q9UQF2 711 aa21.07■□□□□ 0.96
SS18-209ENST00000578595 MYO10Q9HD67 2058 aa21.07■□□□□ 0.96
SS18-209ENST00000578595 CCDC195A0A1B0GUA6 201 aa21.06■□□□□ 0.96
SS18-209ENST00000578595 KINO60870 393 aaKnown RBP21.06■□□□□ 0.96
SS18-209ENST00000578595 CLSTN1O94985 981 aa21.06■□□□□ 0.96
SS18-209ENST00000578595 TNNC2P02585 160 aa21.06■□□□□ 0.96
SS18-209ENST00000578595 ITGB3P05106 788 aa21.06■□□□□ 0.96
SS18-209ENST00000578595 DLATP10515 647 aaKnown RBP21.06■□□□□ 0.96
SS18-209ENST00000578595 POLR2BP30876 1174 aaKnown RBP21.06■□□□□ 0.96
SS18-209ENST00000578595 TAF6P49848 677 aa21.06■□□□□ 0.96
SS18-209ENST00000578595 SNRPFP62306 86 aaKnown RBP21.06■□□□□ 0.96
SS18-209ENST00000578595 YWHAHQ04917 246 aaPredicted RBP21.06■□□□□ 0.96
SS18-209ENST00000578595 SURF1Q15526 300 aa21.06■□□□□ 0.96
SS18-209ENST00000578595 PPM1LQ5SGD2 360 aa21.06■□□□□ 0.96
SS18-209ENST00000578595 SMG7Q92540 1137 aaKnown RBP21.06■□□□□ 0.96
SS18-209ENST00000578595 SENP8Q96LD8 212 aa21.06■□□□□ 0.96
SS18-209ENST00000578595 FNBP1Q96RU3 617 aa21.06■□□□□ 0.96
SS18-209ENST00000578595 MTMR12Q9C0I1 747 aa21.06■□□□□ 0.96
SS18-209ENST00000578595 POMKQ9H5K3 350 aa21.06■□□□□ 0.96
SS18-209ENST00000578595 POLIQ9UNA4 740 aa21.06■□□□□ 0.96
SS18-209ENST00000578595 BACE2Q9Y5Z0 518 aa21.06■□□□□ 0.96
SS18-209ENST00000578595 ARHGEF37A1IGU5 675 aa21.05■□□□□ 0.96
SS18-209ENST00000578595 RHOBTB3O94955 611 aa21.05■□□□□ 0.96
SS18-209ENST00000578595 C8AP07357 584 aa21.05■□□□□ 0.96
SS18-209ENST00000578595 TNNI1P19237 187 aa21.05■□□□□ 0.96
SS18-209ENST00000578595 ELF1P32519 619 aa21.05■□□□□ 0.96
SS18-209ENST00000578595 ROR1Q01973 937 aa21.05■□□□□ 0.96
SS18-209ENST00000578595 BFSP1Q12934 665 aa21.05■□□□□ 0.96
SS18-209ENST00000578595 SV2CQ496J9 727 aa21.05■□□□□ 0.96
SS18-209ENST00000578595 CCDC127Q96BQ5 260 aa21.05■□□□□ 0.96
SS18-209ENST00000578595 CD320Q9NPF0 282 aa21.05■□□□□ 0.96
SS18-209ENST00000578595 FBXL5Q9UKA1 691 aa21.05■□□□□ 0.96
SS18-209ENST00000578595 FBXW11Q9UKB1 542 aa21.05■□□□□ 0.96
SS18-209ENST00000578595 AGAP1Q9UPQ3 857 aa21.05■□□□□ 0.96
SS18-209ENST00000578595 GADD45BO75293 160 aaPredicted RBP21.04■□□□□ 0.96
SS18-209ENST00000578595 SMC2O95347 1197 aa21.04■□□□□ 0.96
SS18-209ENST00000578595 LILRA4P59901 499 aa21.04■□□□□ 0.96
SS18-209ENST00000578595 RAB33AQ14088 237 aa21.04■□□□□ 0.96
SS18-209ENST00000578595 OVOS1Q6IE37 1185 aa21.04■□□□□ 0.96
SS18-209ENST00000578595 RSPO2Q6UXX9 243 aaPredicted RBP21.04■□□□□ 0.96
SS18-209ENST00000578595 GPR149Q86SP6 731 aa21.04■□□□□ 0.96
SS18-209ENST00000578595 CSGALNACT2Q8N6G5 542 aa21.04■□□□□ 0.96
SS18-209ENST00000578595 SLC7A14Q8TBB6 771 aa21.04■□□□□ 0.96
SS18-209ENST00000578595 FEZF2Q8TBJ5 459 aa21.04■□□□□ 0.96
SS18-209ENST00000578595 HDAC7Q8WUI4 952 aa21.04■□□□□ 0.96
SS18-209ENST00000578595 ERCC4Q92889 916 aaPredicted RBP21.04■□□□□ 0.96
SS18-209ENST00000578595 SMARCE1Q969G3 411 aa21.04■□□□□ 0.96
SS18-209ENST00000578595 RMND1Q9NWS8 449 aa21.04■□□□□ 0.96
SS18-209ENST00000578595 NR2E1Q9Y466 385 aa21.04■□□□□ 0.96
SS18-209ENST00000578595 ANO9A1A5B4 782 aa21.03■□□□□ 0.96
SS18-209ENST00000578595 M0QZQ0 153 aa21.03■□□□□ 0.96
SS18-209ENST00000578595 PIRO00625 290 aa21.03■□□□□ 0.96
SS18-209ENST00000578595 PRRG1O14668 218 aa21.03■□□□□ 0.96
SS18-209ENST00000578595 CALUO43852 315 aaPredicted RBP21.03■□□□□ 0.96
SS18-209ENST00000578595 ZMYND10O75800 440 aa21.03■□□□□ 0.96
SS18-209ENST00000578595 SNW1Q13573 536 aaKnown RBP21.03■□□□□ 0.96
SS18-209ENST00000578595 KCNB1Q14721 858 aa21.03■□□□□ 0.96
SS18-209ENST00000578595 CEP135Q66GS9 1140 aa21.03■□□□□ 0.96
SS18-209ENST00000578595 LILRA6Q6PI73 481 aa21.03■□□□□ 0.96
SS18-209ENST00000578595 CCDC149Q6ZUS6 474 aa21.03■□□□□ 0.96
SS18-209ENST00000578595 METTL23Q86XA0 190 aa21.03■□□□□ 0.96
SS18-209ENST00000578595 C1orf127Q8N9H9 656 aa21.03■□□□□ 0.96
SS18-209ENST00000578595 ENGASEQ8NFI3 743 aa21.03■□□□□ 0.96
SS18-209ENST00000578595 ITGA11Q9UKX5 1188 aa21.03■□□□□ 0.96
SS18-209ENST00000578595 DOCK8Q8NF50 2099 aa21.02■□□□□ 0.96
SS18-209ENST00000578595 WDR27A2RRH5 827 aa21.02■□□□□ 0.96
SS18-209ENST00000578595 CYB561D2O14569 222 aa21.02■□□□□ 0.96
SS18-209ENST00000578595 SPTLC1O15269 473 aa21.02■□□□□ 0.96
SS18-209ENST00000578595 CCL16O15467 120 aa21.02■□□□□ 0.96
SS18-209ENST00000578595 NR3C1P04150 777 aa21.02■□□□□ 0.96
SS18-209ENST00000578595 PAX3P23760 479 aa21.02■□□□□ 0.96
SS18-209ENST00000578595 PNPLA4P41247 253 aa21.02■□□□□ 0.96
SS18-209ENST00000578595 AARSP49588 968 aaKnown RBP eCLIP21.02■□□□□ 0.96
SS18-209ENST00000578595 CYP24A1Q07973 514 aa21.02■□□□□ 0.96
SS18-209ENST00000578595 C15orf39Q6ZRI6 1047 aa21.02■□□□□ 0.96
SS18-209ENST00000578595 WDR49Q8IV35 697 aa21.02■□□□□ 0.96
SS18-209ENST00000578595 C12orf56Q8IXR9 622 aa21.02■□□□□ 0.96
SS18-209ENST00000578595 SMYD4Q8IYR2 804 aaPredicted RBP21.02■□□□□ 0.96
SS18-209ENST00000578595 TDRD5Q8NAT2 981 aaKnown RBP21.02■□□□□ 0.96
SS18-209ENST00000578595 CYP4F11Q9HBI6 524 aa21.02■□□□□ 0.96
SS18-209ENST00000578595 INTS13Q9NVM9 706 aa21.02■□□□□ 0.96
SS18-209ENST00000578595 ZDHHC7Q9NXF8 308 aa21.02■□□□□ 0.96
SS18-209ENST00000578595 PTPRJQ12913 1337 aa21.02■□□□□ 0.95
SS18-209ENST00000578595 KPNA7A9QM74 516 aa21.01■□□□□ 0.95
SS18-209ENST00000578595 PDXKO00764 312 aa21.01■□□□□ 0.95
SS18-209ENST00000578595 C1RP00736 705 aa21.01■□□□□ 0.95
SS18-209ENST00000578595 TYMPP19971 482 aa21.01■□□□□ 0.95
SS18-209ENST00000578595 DUOXA2Q1HG44 320 aa21.01■□□□□ 0.95
SS18-209ENST00000578595 SLC8B1Q6J4K2 584 aa21.01■□□□□ 0.95
SS18-209ENST00000578595 CMASQ8NFW8 434 aaPredicted RBP21.01■□□□□ 0.95
SS18-209ENST00000578595 OR5B17Q8NGF7 314 aa21.01■□□□□ 0.95
SS18-209ENST00000578595 CGRRF1Q99675 332 aa21.01■□□□□ 0.95
SS18-209ENST00000578595 XYLBO75191 536 aa21■□□□□ 0.95
SS18-209ENST00000578595 LRG1P02750 347 aa21■□□□□ 0.95
SS18-209ENST00000578595 OR4Q2P0C623 313 aa21■□□□□ 0.95
SS18-209ENST00000578595 RBP5P82980 135 aa21■□□□□ 0.95
SS18-209ENST00000578595 MYO1EQ12965 1108 aa21■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms