RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 MMS22LQ6ZRQ5 1243 aa10.72□□□□□ -0.69
VPS53-220ENST00000576149 TSHZ1Q6ZSZ6 1077 aa10.72□□□□□ -0.69
VPS53-220ENST00000576149 RHOT1Q8IXI2 618 aa10.72□□□□□ -0.69
VPS53-220ENST00000576149 GRK7Q8WTQ7 553 aa10.72□□□□□ -0.69
VPS53-220ENST00000576149 ZNF606Q8WXB4 792 aa10.72□□□□□ -0.69
VPS53-220ENST00000576149 ATG4AQ8WYN0 398 aa10.72□□□□□ -0.69
VPS53-220ENST00000576149 IMPG2Q9BZV3 1241 aa10.72□□□□□ -0.69
VPS53-220ENST00000576149 DCLK3Q9C098 648 aa10.72□□□□□ -0.69
VPS53-220ENST00000576149 CSADQ9Y600 493 aa10.72□□□□□ -0.69
VPS53-220ENST00000576149 O00370 1275 aa10.72□□□□□ -0.69
VPS53-220ENST00000576149 ITIH2P19823 946 aa10.72□□□□□ -0.69
VPS53-220ENST00000576149 IVDP26440 423 aa10.72□□□□□ -0.69
VPS53-220ENST00000576149 SSTR3P32745 418 aaPredicted RBP10.72□□□□□ -0.69
VPS53-220ENST00000576149 TAS2R40P59535 323 aa10.72□□□□□ -0.69
VPS53-220ENST00000576149 MKRN4PQ13434 485 aaPredicted RBP10.72□□□□□ -0.69
VPS53-220ENST00000576149 PTK6Q13882 451 aa10.72□□□□□ -0.69
VPS53-220ENST00000576149 DAB2IPQ5VWQ8 1189 aa10.72□□□□□ -0.69
VPS53-220ENST00000576149 CDCA2Q69YH5 1023 aaPredicted RBP10.72□□□□□ -0.69
VPS53-220ENST00000576149 RHBDF2Q6PJF5 856 aa10.72□□□□□ -0.69
VPS53-220ENST00000576149 GADL1Q6ZQY3 521 aa10.72□□□□□ -0.69
VPS53-220ENST00000576149 TRMT10CQ7L0Y3 403 aaKnown RBP10.72□□□□□ -0.69
VPS53-220ENST00000576149 KATNAL2Q8IYT4 538 aa10.72□□□□□ -0.69
VPS53-220ENST00000576149 NLGN2Q8NFZ4 835 aa10.72□□□□□ -0.69
VPS53-220ENST00000576149 RAPGEF5Q92565 580 aa10.72□□□□□ -0.69
VPS53-220ENST00000576149 ACO2Q99798 780 aaKnown RBP10.72□□□□□ -0.69
VPS53-220ENST00000576149 AZI2Q9H6S1 392 aa10.72□□□□□ -0.69
VPS53-220ENST00000576149 HOMER3Q9NSC5 361 aa10.72□□□□□ -0.69
VPS53-220ENST00000576149 PARVAQ9NVD7 372 aa10.72□□□□□ -0.69
VPS53-220ENST00000576149 TMEM51Q9NW97 253 aa10.72□□□□□ -0.69
VPS53-220ENST00000576149 GGA2Q9UJY4 613 aa10.72□□□□□ -0.69
VPS53-220ENST00000576149 UTRNP46939 3433 aa10.71□□□□□ -0.69
VPS53-220ENST00000576149 PTPRFP10586 1907 aa10.71□□□□□ -0.69
VPS53-220ENST00000576149 TLDC2A0PJX2 215 aa10.71□□□□□ -0.69
VPS53-220ENST00000576149 TLR3O15455 904 aaKnown RBP10.71□□□□□ -0.69
VPS53-220ENST00000576149 TPD52L2O43399 206 aaKnown RBP10.71□□□□□ -0.69
VPS53-220ENST00000576149 RALAP11233 206 aa10.71□□□□□ -0.69
VPS53-220ENST00000576149 MMP8P22894 467 aa10.71□□□□□ -0.69
VPS53-220ENST00000576149 PPARDQ03181 441 aa10.71□□□□□ -0.69
VPS53-220ENST00000576149 LAMTOR4Q0VGL1 99 aa10.71□□□□□ -0.69
VPS53-220ENST00000576149 IRF5Q13568 498 aa10.71□□□□□ -0.69
VPS53-220ENST00000576149 MXD4Q14582 209 aaPredicted RBP10.71□□□□□ -0.69
VPS53-220ENST00000576149 EEPD1Q7L9B9 569 aa10.71□□□□□ -0.69
VPS53-220ENST00000576149 ZBTB33Q86T24 672 aa10.71□□□□□ -0.69
VPS53-220ENST00000576149 ATL2Q8NHH9 583 aa10.71□□□□□ -0.69
VPS53-220ENST00000576149 FEZF2Q8TBJ5 459 aa10.71□□□□□ -0.69
VPS53-220ENST00000576149 TCP11Q8WWU5 503 aa10.71□□□□□ -0.69
VPS53-220ENST00000576149 PPM1EQ8WY54 764 aa10.71□□□□□ -0.69
VPS53-220ENST00000576149 CENPTQ96BT3 561 aa10.71□□□□□ -0.69
VPS53-220ENST00000576149 SNF8Q96H20 258 aa10.71□□□□□ -0.69
VPS53-220ENST00000576149 TCHPQ9BT92 498 aa10.71□□□□□ -0.69
VPS53-220ENST00000576149 SLC24A3Q9HC58 644 aa10.71□□□□□ -0.69
VPS53-220ENST00000576149 AAASQ9NRG9 546 aa10.71□□□□□ -0.69
VPS53-220ENST00000576149 ASIC3Q9UHC3 531 aa10.71□□□□□ -0.69
VPS53-220ENST00000576149 R3HDM2Q9Y2K5 976 aaKnown RBP10.71□□□□□ -0.69
VPS53-220ENST00000576149 IGKV6-21A0A0C4DH24 114 aa10.7□□□□□ -0.7
VPS53-220ENST00000576149 A0A0G2JLL6 359 aaPredicted RBP10.7□□□□□ -0.7
VPS53-220ENST00000576149 ZBTB42B2RXF5 422 aa10.7□□□□□ -0.7
VPS53-220ENST00000576149 SOCS7O14512 581 aa10.7□□□□□ -0.7
VPS53-220ENST00000576149 ABLIM1O14639 778 aa10.7□□□□□ -0.7
VPS53-220ENST00000576149 IRF6O14896 467 aa10.7□□□□□ -0.7
VPS53-220ENST00000576149 OGTO15294 1046 aa10.7□□□□□ -0.7
VPS53-220ENST00000576149 RGS16O15492 202 aaPredicted RBP10.7□□□□□ -0.7
VPS53-220ENST00000576149 GAS2O43903 313 aaKnown RBP10.7□□□□□ -0.7
VPS53-220ENST00000576149 LGR5O75473 907 aa10.7□□□□□ -0.7
VPS53-220ENST00000576149 CNMDO75829 334 aa10.7□□□□□ -0.7
VPS53-220ENST00000576149 ARIH2O95376 493 aa10.7□□□□□ -0.7
VPS53-220ENST00000576149 GAS8O95995 478 aa10.7□□□□□ -0.7
VPS53-220ENST00000576149 AGTP01019 485 aa10.7□□□□□ -0.7
VPS53-220ENST00000576149 MMP13P45452 471 aa10.7□□□□□ -0.7
VPS53-220ENST00000576149 CDR1P51861 262 aa10.7□□□□□ -0.7
VPS53-220ENST00000576149 MCL1Q07820 350 aa10.7□□□□□ -0.7
VPS53-220ENST00000576149 CCNG2Q16589 344 aa10.7□□□□□ -0.7
VPS53-220ENST00000576149 TNFAIP8L3Q5GJ75 292 aa10.7□□□□□ -0.7
VPS53-220ENST00000576149 MICALCLQ6ZW33 695 aa10.7□□□□□ -0.7
VPS53-220ENST00000576149 PRRT2Q7Z6L0 340 aaPredicted RBP10.7□□□□□ -0.7
VPS53-220ENST00000576149 TADA2BQ86TJ2 420 aa10.7□□□□□ -0.7
VPS53-220ENST00000576149 CCDC50Q8IVM0 306 aa10.7□□□□□ -0.7
VPS53-220ENST00000576149 EXD1Q8NHP7 514 aa10.7□□□□□ -0.7
VPS53-220ENST00000576149 GPR20Q99678 358 aa10.7□□□□□ -0.7
VPS53-220ENST00000576149 HEMGNQ9BXL5 484 aa10.7□□□□□ -0.7
VPS53-220ENST00000576149 MTMR12Q9C0I1 747 aa10.7□□□□□ -0.7
VPS53-220ENST00000576149 R3HDMLQ9H3Y0 253 aa10.7□□□□□ -0.7
VPS53-220ENST00000576149 CPSF3Q9UKF6 684 aaKnown RBP10.7□□□□□ -0.7
VPS53-220ENST00000576149 NEU2Q9Y3R4 380 aa10.7□□□□□ -0.7
VPS53-220ENST00000576149 TTC36A6NLP5 189 aa10.7□□□□□ -0.7
VPS53-220ENST00000576149 MEFVO15553 781 aaPredicted RBP10.7□□□□□ -0.7
VPS53-220ENST00000576149 PRKCBP05771 671 aa10.7□□□□□ -0.7
VPS53-220ENST00000576149 SRGAP2CP0DJJ0 459 aa10.7□□□□□ -0.7
VPS53-220ENST00000576149 MARK3P27448 753 aa10.7□□□□□ -0.7
VPS53-220ENST00000576149 MYL6P60660 151 aa10.7□□□□□ -0.7
VPS53-220ENST00000576149 IFI35P80217 286 aaPredicted RBP10.7□□□□□ -0.7
VPS53-220ENST00000576149 SLC20A2Q08357 652 aa10.7□□□□□ -0.7
VPS53-220ENST00000576149 MAPK6Q16659 721 aa10.7□□□□□ -0.7
VPS53-220ENST00000576149 DUOXA2Q1HG44 320 aa10.7□□□□□ -0.7
VPS53-220ENST00000576149 HSDL1Q3SXM5 330 aa10.7□□□□□ -0.7
VPS53-220ENST00000576149 CELF3Q5SZQ8 465 aaKnown RBP10.7□□□□□ -0.7
VPS53-220ENST00000576149 KCNV1Q6PIU1 500 aa10.7□□□□□ -0.7
VPS53-220ENST00000576149 PLPPR4Q7Z2D5 763 aa10.7□□□□□ -0.7
VPS53-220ENST00000576149 YTHDF3Q7Z739 585 aaKnown RBP10.7□□□□□ -0.7
VPS53-220ENST00000576149 CCDC25Q86WR0 208 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms