RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 HASPINQ8TF76 798 aa18.67■□□□□ 0.58
CLN3-217ENST00000565354 C18orf25Q96B23 403 aaPredicted RBP18.67■□□□□ 0.58
CLN3-217ENST00000565354 KCTD10Q9H3F6 313 aa18.67■□□□□ 0.58
CLN3-217ENST00000565354 KIAA1468Q9P260 1216 aa18.67■□□□□ 0.58
CLN3-217ENST00000565354 ADAM28Q9UKQ2 775 aa18.67■□□□□ 0.58
CLN3-217ENST00000565354 DERAQ9Y315 318 aa18.67■□□□□ 0.58
CLN3-217ENST00000565354 TRIP11Q15643 1979 aa18.67■□□□□ 0.58
CLN3-217ENST00000565354 PODXLO00592 558 aa18.66■□□□□ 0.58
CLN3-217ENST00000565354 MEFVO15553 781 aaPredicted RBP18.66■□□□□ 0.58
CLN3-217ENST00000565354 NR3C1P04150 777 aa18.66■□□□□ 0.58
CLN3-217ENST00000565354 PRCPP42785 496 aa18.66■□□□□ 0.58
CLN3-217ENST00000565354 CLCNKBP51801 687 aa18.66■□□□□ 0.58
CLN3-217ENST00000565354 SURF1Q15526 300 aa18.66■□□□□ 0.58
CLN3-217ENST00000565354 NAB2Q15742 525 aa18.66■□□□□ 0.58
CLN3-217ENST00000565354 SNRNP35Q16560 246 aaKnown RBP18.66■□□□□ 0.58
CLN3-217ENST00000565354 DDX53Q86TM3 631 aaKnown RBP18.66■□□□□ 0.58
CLN3-217ENST00000565354 CBWD2Q8IUF1 395 aa18.66■□□□□ 0.58
CLN3-217ENST00000565354 VPS52Q8N1B4 723 aa18.66■□□□□ 0.58
CLN3-217ENST00000565354 FLCNQ8NFG4 579 aa18.66■□□□□ 0.58
CLN3-217ENST00000565354 MARCH5Q9NX47 278 aa18.66■□□□□ 0.58
CLN3-217ENST00000565354 TUBGCP4Q9UGJ1 667 aa18.66■□□□□ 0.58
CLN3-217ENST00000565354 FRMD4BQ9Y2L6 1034 aa18.66■□□□□ 0.58
CLN3-217ENST00000565354 NUB1Q9Y5A7 615 aa18.66■□□□□ 0.58
CLN3-217ENST00000565354 PDCD11Q14690 1871 aaKnown RBP18.65■□□□□ 0.58
CLN3-217ENST00000565354 C2orf16Q68DN1 1984 aa18.65■□□□□ 0.58
CLN3-217ENST00000565354 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP18.65■□□□□ 0.58
CLN3-217ENST00000565354 PSMA7O14818 248 aa18.65■□□□□ 0.58
CLN3-217ENST00000565354 B3GAT3O94766 335 aa18.65■□□□□ 0.58
CLN3-217ENST00000565354 KIF4AO95239 1232 aa18.65■□□□□ 0.58
CLN3-217ENST00000565354 ADRB2P07550 413 aa18.65■□□□□ 0.58
CLN3-217ENST00000565354 NFICP08651 508 aa18.65■□□□□ 0.58
CLN3-217ENST00000565354 EPCAMP16422 314 aa18.65■□□□□ 0.58
CLN3-217ENST00000565354 AOC1P19801 751 aa18.65■□□□□ 0.58
CLN3-217ENST00000565354 CYP3A5P20815 502 aa18.65■□□□□ 0.58
CLN3-217ENST00000565354 RPL13P26373 211 aaKnown RBP18.65■□□□□ 0.58
CLN3-217ENST00000565354 RPL9P32969 192 aaKnown RBP18.65■□□□□ 0.58
CLN3-217ENST00000565354 MCM4P33991 863 aa18.65■□□□□ 0.58
CLN3-217ENST00000565354 SOX4Q06945 474 aaPredicted RBP18.65■□□□□ 0.58
CLN3-217ENST00000565354 COBLL1Q53SF7 1204 aa18.65■□□□□ 0.58
CLN3-217ENST00000565354 CEP135Q66GS9 1140 aa18.65■□□□□ 0.58
CLN3-217ENST00000565354 FUT10Q6P4F1 479 aa18.65■□□□□ 0.58
CLN3-217ENST00000565354 DCLRE1AQ6PJP8 1040 aa18.65■□□□□ 0.58
CLN3-217ENST00000565354 NT5DC4Q86YG4 428 aa18.65■□□□□ 0.58
CLN3-217ENST00000565354 TRIML1Q8N9V2 468 aa18.65■□□□□ 0.58
CLN3-217ENST00000565354 GPT2Q8TD30 523 aa18.65■□□□□ 0.58
CLN3-217ENST00000565354 CACTINQ8WUQ7 758 aaKnown RBP18.65■□□□□ 0.58
CLN3-217ENST00000565354 BCL7CQ8WUZ0 217 aaPredicted RBP18.65■□□□□ 0.58
CLN3-217ENST00000565354 FNBP1Q96RU3 617 aa18.65■□□□□ 0.58
CLN3-217ENST00000565354 PAAF1Q9BRP4 392 aa18.65■□□□□ 0.58
CLN3-217ENST00000565354 ZBP1Q9H171 429 aa18.65■□□□□ 0.58
CLN3-217ENST00000565354 TRAF3IP3Q9Y228 551 aa18.65■□□□□ 0.58
CLN3-217ENST00000565354 R3HCC1Q9Y3T6 440 aaKnown RBP18.65■□□□□ 0.58
CLN3-217ENST00000565354 C2CD2Q9Y426 696 aa18.65■□□□□ 0.58
CLN3-217ENST00000565354 SF3B1O75533 1304 aaKnown RBP eCLIP18.65■□□□□ 0.58
CLN3-217ENST00000565354 DNAH14Q0VDD8 3507 aa18.65■□□□□ 0.58
CLN3-217ENST00000565354 F8W810 466 aa18.64■□□□□ 0.57
CLN3-217ENST00000565354 TMEM191BP0C7N4 346 aa18.64■□□□□ 0.57
CLN3-217ENST00000565354 NPR3P17342 541 aa18.64■□□□□ 0.57
CLN3-217ENST00000565354 NR2F2P24468 414 aa18.64■□□□□ 0.57
CLN3-217ENST00000565354 TFAMQ00059 246 aaKnown RBP18.64■□□□□ 0.57
CLN3-217ENST00000565354 ELAVL2Q12926 359 aaKnown RBP18.64■□□□□ 0.57
CLN3-217ENST00000565354 MORC3Q14149 939 aa18.64■□□□□ 0.57
CLN3-217ENST00000565354 UPP1Q16831 310 aa18.64■□□□□ 0.57
CLN3-217ENST00000565354 KLHL10Q6JEL2 608 aa18.64■□□□□ 0.57
CLN3-217ENST00000565354 CCDC105Q8IYK2 499 aa18.64■□□□□ 0.57
CLN3-217ENST00000565354 AUTS2Q8WXX7 1259 aa18.64■□□□□ 0.57
CLN3-217ENST00000565354 ANKRD36BP1Q96IX9 119 aa18.64■□□□□ 0.57
CLN3-217ENST00000565354 PDE11AQ9HCR9 933 aa18.64■□□□□ 0.57
CLN3-217ENST00000565354 IRAK3Q9Y616 596 aa18.64■□□□□ 0.57
CLN3-217ENST00000565354 FRYLO94915 3013 aa18.63■□□□□ 0.57
CLN3-217ENST00000565354 TRAPPC3O43617 180 aa18.63■□□□□ 0.57
CLN3-217ENST00000565354 PI15O43692 258 aa18.63■□□□□ 0.57
CLN3-217ENST00000565354 SOD2P04179 222 aa18.63■□□□□ 0.57
CLN3-217ENST00000565354 URODP06132 367 aa18.63■□□□□ 0.57
CLN3-217ENST00000565354 GUCY2FP51841 1108 aa18.63■□□□□ 0.57
CLN3-217ENST00000565354 MYBPC2Q14324 1141 aa18.63■□□□□ 0.57
CLN3-217ENST00000565354 ANGPT1Q15389 498 aa18.63■□□□□ 0.57
CLN3-217ENST00000565354 SPATA1Q5VX52 437 aa18.63■□□□□ 0.57
CLN3-217ENST00000565354 SLC9A9Q8IVB4 645 aa18.63■□□□□ 0.57
CLN3-217ENST00000565354 SLC22A17Q8WUG5 538 aa18.63■□□□□ 0.57
CLN3-217ENST00000565354 ACSF2Q96CM8 615 aaPredicted RBP18.63■□□□□ 0.57
CLN3-217ENST00000565354 DHTKD1Q96HY7 919 aaPredicted RBP18.63■□□□□ 0.57
CLN3-217ENST00000565354 RTP3Q9BQQ7 232 aa18.63■□□□□ 0.57
CLN3-217ENST00000565354 HERC2P3Q9BVR0 1158 aa18.63■□□□□ 0.57
CLN3-217ENST00000565354 SSX2IPQ9Y2D8 614 aa18.63■□□□□ 0.57
CLN3-217ENST00000565354 CEP250Q9BV73 2442 aa18.63■□□□□ 0.57
CLN3-217ENST00000565354 TMEM189-UBE2V1I3L0A0 370 aa18.62■□□□□ 0.57
CLN3-217ENST00000565354 TNNC2P02585 160 aa18.62■□□□□ 0.57
CLN3-217ENST00000565354 DLATP10515 647 aaKnown RBP18.62■□□□□ 0.57
CLN3-217ENST00000565354 CTSAP10619 480 aa18.62■□□□□ 0.57
CLN3-217ENST00000565354 TNNI1P19237 187 aa18.62■□□□□ 0.57
CLN3-217ENST00000565354 PTMSP20962 102 aa18.62■□□□□ 0.57
CLN3-217ENST00000565354 CYP24A1Q07973 514 aa18.62■□□□□ 0.57
CLN3-217ENST00000565354 ADAM9Q13443 819 aa18.62■□□□□ 0.57
CLN3-217ENST00000565354 TDGQ13569 410 aa18.62■□□□□ 0.57
CLN3-217ENST00000565354 ZBTB6Q15916 424 aa18.62■□□□□ 0.57
CLN3-217ENST00000565354 NFIL3Q16649 462 aa18.62■□□□□ 0.57
CLN3-217ENST00000565354 EDRF1Q3B7T1 1238 aa18.62■□□□□ 0.57
CLN3-217ENST00000565354 TMC5Q6UXY8 1006 aa18.62■□□□□ 0.57
CLN3-217ENST00000565354 CEP57Q86XR8 500 aa18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms