RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 NGEFQ8N5V2 710 aa5.76□□□□□ -1.49
VPS35P1-201ENST00000563400 ATP11CQ8NB49 1132 aa5.76□□□□□ -1.49
VPS35P1-201ENST00000563400 IP6K1Q92551 441 aa5.76□□□□□ -1.49
VPS35P1-201ENST00000563400 KLHDC7BQ96G42 594 aa5.76□□□□□ -1.49
VPS35P1-201ENST00000563400 ZC3H10Q96K80 434 aaKnown RBP5.76□□□□□ -1.49
VPS35P1-201ENST00000563400 MEGF10Q96KG7 1140 aa5.76□□□□□ -1.49
VPS35P1-201ENST00000563400 CNDP2Q96KP4 475 aaKnown RBP5.76□□□□□ -1.49
VPS35P1-201ENST00000563400 KREMEN1Q96MU8 473 aa5.76□□□□□ -1.49
VPS35P1-201ENST00000563400 WDR18Q9BV38 432 aa5.76□□□□□ -1.49
VPS35P1-201ENST00000563400 SENP6Q9GZR1 1112 aaPredicted RBP5.76□□□□□ -1.49
VPS35P1-201ENST00000563400 SOX17Q9H6I2 414 aaPredicted RBP5.76□□□□□ -1.49
VPS35P1-201ENST00000563400 CCDC177Q9NQR7 707 aaPredicted RBP5.76□□□□□ -1.49
VPS35P1-201ENST00000563400 GPATCH2Q9NW75 528 aa5.76□□□□□ -1.49
VPS35P1-201ENST00000563400 CLEC1BQ9P126 229 aa5.76□□□□□ -1.49
VPS35P1-201ENST00000563400 MYO1AQ9UBC5 1043 aa5.76□□□□□ -1.49
VPS35P1-201ENST00000563400 PCOLCE2Q9UKZ9 415 aa5.76□□□□□ -1.49
VPS35P1-201ENST00000563400 C19orf53Q9UNZ5 99 aaPredicted RBP5.76□□□□□ -1.49
VPS35P1-201ENST00000563400 MAN2B2Q9Y2E5 1009 aa5.76□□□□□ -1.49
VPS35P1-201ENST00000563400 PCDHA2Q9Y5H9 948 aa5.76□□□□□ -1.49
VPS35P1-201ENST00000563400 CPDO75976 1380 aa5.76□□□□□ -1.49
VPS35P1-201ENST00000563400 PHLPP1O60346 1717 aa5.76□□□□□ -1.49
VPS35P1-201ENST00000563400 A0A1W2PP64 1363 aa5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 RTL1A6NKG5 1358 aa5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 AATKQ6ZMQ8 1374 aa5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 PNPLA6Q8IY17 1366 aa5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 FAM47E-STBD1D6RA91 191 aa5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 ELL2O00472 640 aaPredicted RBP5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 SPTLC2O15270 562 aa5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 FANCGO15287 622 aa5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 DHX15O43143 795 aaKnown RBP5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 PHGDHO43175 533 aaKnown RBP5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 SART1O43290 800 aaKnown RBP5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 GOSR1O95249 250 aa5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 IL11P20809 199 aa5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 CD40P25942 277 aa5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 SLC7A1P30825 629 aa5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 DEKP35659 375 aaKnown RBP5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 PHKA1P46020 1223 aa5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 AFF3P51826 1226 aaKnown RBP5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 SLC5A3P53794 718 aa5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 SUMO3P55854 103 aaPredicted RBP5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 BCAR1P56945 870 aa5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 ARF3P61204 181 aaPredicted RBP5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 ERVK-24P63145 666 aa5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 MRPS35P82673 323 aaKnown RBP5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 MRPS9P82933 396 aaKnown RBP5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 HTRA4P83105 476 aaPredicted RBP5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 ARF1P84077 181 aaKnown RBP5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 CDK17Q00537 523 aa5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 MTA1Q13330 715 aa5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 WDR43Q15061 677 aaKnown RBP eCLIP5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 MUM1Q2TAK8 710 aa5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 UVSSAQ2YD98 709 aa5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 GLIPR1L2Q4G1C9 344 aa5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 AMOTQ4VCS5 1084 aa5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 PARP10Q53GL7 1025 aa5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 C3orf38Q5JPI3 329 aa5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 PRSS36Q5K4E3 855 aa5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 CPZQ66K79 652 aa5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 TRIM68Q6AZZ1 485 aa5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 TANGO2Q6ICL3 276 aa5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 CNKSR3Q6P9H4 555 aa5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 ZNF765Q7L2R6 523 aa5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 KRT74Q7RTS7 529 aa5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 RTKN2Q8IZC4 609 aa5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 CEP70Q8NHQ1 597 aa5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 ZNF507Q8TCN5 953 aa5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 TSPEARQ8WU66 669 aa5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 DPF2Q92785 391 aa5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 ATP2A3Q93084 1043 aa5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 CD244Q9BZW8 370 aa5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 RNF208Q9H0X6 261 aa5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 TRPV4Q9HBA0 871 aa5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 PRDM5Q9NQX1 630 aaPredicted RBP5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 BTG4Q9NY30 223 aa5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 STK32BQ9NY57 414 aa5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 DPP7Q9UHL4 492 aa5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 FBXL7Q9UJT9 491 aa5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 NALCNQ8IZF0 1738 aa5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 BLMP54132 1417 aaPredicted RBP5.75□□□□□ -1.49
VPS35P1-201ENST00000563400 PLEKHG2Q9H7P9 1386 aa5.74□□□□□ -1.49
VPS35P1-201ENST00000563400 DISP3Q9P2K9 1392 aa5.74□□□□□ -1.49
VPS35P1-201ENST00000563400 LOC100996750A0A140TA64 210 aa5.74□□□□□ -1.49
VPS35P1-201ENST00000563400 TCRBV5S4A2TA0A5A2 114 aa5.74□□□□□ -1.49
VPS35P1-201ENST00000563400 C2orf71A6NGG8 1288 aa5.74□□□□□ -1.49
VPS35P1-201ENST00000563400 GSC2O15499 205 aa5.74□□□□□ -1.49
VPS35P1-201ENST00000563400 A1BGP04217 495 aa5.74□□□□□ -1.49
VPS35P1-201ENST00000563400 HNRNPA1P09651 372 aaKnown RBP eCLIP5.74□□□□□ -1.49
VPS35P1-201ENST00000563400 ACSL1P33121 698 aa5.74□□□□□ -1.49
VPS35P1-201ENST00000563400 GRK3P35626 688 aa5.74□□□□□ -1.49
VPS35P1-201ENST00000563400 IL12RB1P42701 662 aa5.74□□□□□ -1.49
VPS35P1-201ENST00000563400 PRKAA2P54646 552 aa5.74□□□□□ -1.49
VPS35P1-201ENST00000563400 SLC12A2P55011 1212 aa5.74□□□□□ -1.49
VPS35P1-201ENST00000563400 NLRP12P59046 1061 aa5.74□□□□□ -1.49
VPS35P1-201ENST00000563400 UBE3AQ05086 875 aa5.74□□□□□ -1.49
VPS35P1-201ENST00000563400 CALD1Q05682 793 aaKnown RBP5.74□□□□□ -1.49
VPS35P1-201ENST00000563400 TUSC3Q13454 348 aa5.74□□□□□ -1.49
VPS35P1-201ENST00000563400 CUL4BQ13620 913 aa5.74□□□□□ -1.49
VPS35P1-201ENST00000563400 FGL2Q14314 439 aa5.74□□□□□ -1.49
VPS35P1-201ENST00000563400 TESK1Q15569 626 aa5.74□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms