RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 GLRA4Q5JXX5 417 aa15.25■□□□□ 0.03
LDLR-213ENST00000560502 ATF7IP2Q5U623 682 aa15.25■□□□□ 0.03
LDLR-213ENST00000560502 ZC3H14Q6PJT7 736 aaKnown RBP15.25■□□□□ 0.03
LDLR-213ENST00000560502 C3orf58Q8NDZ4 430 aa15.25■□□□□ 0.03
LDLR-213ENST00000560502 RAD54LQ92698 747 aa15.25■□□□□ 0.03
LDLR-213ENST00000560502 DDX27Q96GQ7 796 aaKnown RBP15.25■□□□□ 0.03
LDLR-213ENST00000560502 UROC1Q96N76 676 aa15.25■□□□□ 0.03
LDLR-213ENST00000560502 PNMA5Q96PV4 448 aa15.25■□□□□ 0.03
LDLR-213ENST00000560502 DNMT3BQ9UBC3 853 aaKnown RBP15.25■□□□□ 0.03
LDLR-213ENST00000560502 CDY1Q9Y6F8 540 aa15.25■□□□□ 0.03
LDLR-213ENST00000560502 DMXL1Q9Y485 3027 aa15.25■□□□□ 0.03
LDLR-213ENST00000560502 PVALEFA0A1B0GWK0 134 aa15.24■□□□□ 0.03
LDLR-213ENST00000560502 BIN1O00499 593 aa15.24■□□□□ 0.03
LDLR-213ENST00000560502 B3GAT3O94766 335 aa15.24■□□□□ 0.03
LDLR-213ENST00000560502 RPN1P04843 607 aaKnown RBP15.24■□□□□ 0.03
LDLR-213ENST00000560502 TKTP29401 623 aaKnown RBP15.24■□□□□ 0.03
LDLR-213ENST00000560502 CLCNKBP51801 687 aa15.24■□□□□ 0.03
LDLR-213ENST00000560502 PABPC1LQ4VXU2 614 aaKnown RBP15.24■□□□□ 0.03
LDLR-213ENST00000560502 XKR4Q5GH76 650 aa15.24■□□□□ 0.03
LDLR-213ENST00000560502 GRAMD1CQ8IYS0 662 aa15.24■□□□□ 0.03
LDLR-213ENST00000560502 KIFAP3Q92845 792 aa15.24■□□□□ 0.03
LDLR-213ENST00000560502 ERCC4Q92889 916 aaPredicted RBP15.24■□□□□ 0.03
LDLR-213ENST00000560502 PPP1R9BQ96SB3 815 aa15.24■□□□□ 0.03
LDLR-213ENST00000560502 KXD1Q9BQD3 176 aa15.24■□□□□ 0.03
LDLR-213ENST00000560502 OSBPL6Q9BZF3 934 aa15.24■□□□□ 0.03
LDLR-213ENST00000560502 TRIM9Q9C026 710 aa15.24■□□□□ 0.03
LDLR-213ENST00000560502 GOLGA2P5Q9HBQ8 144 aa15.24■□□□□ 0.03
LDLR-213ENST00000560502 AVENQ9NQS1 362 aaPredicted RBP15.24■□□□□ 0.03
LDLR-213ENST00000560502 BLOC1S4Q9NUP1 217 aa15.24■□□□□ 0.03
LDLR-213ENST00000560502 POLIQ9UNA4 740 aa15.24■□□□□ 0.03
LDLR-213ENST00000560502 TNFSF13BQ9Y275 285 aa15.24■□□□□ 0.03
LDLR-213ENST00000560502 F5P12259 2224 aa15.24■□□□□ 0.03
LDLR-213ENST00000560502 NCOR2Q9Y618 2525 aa15.23■□□□□ 0.03
LDLR-213ENST00000560502 RHOBTB3O94955 611 aa15.23■□□□□ 0.03
LDLR-213ENST00000560502 GRM5P41594 1212 aa15.23■□□□□ 0.03
LDLR-213ENST00000560502 MYL5Q02045 173 aa15.23■□□□□ 0.03
LDLR-213ENST00000560502 SOX4Q06945 474 aaPredicted RBP15.23■□□□□ 0.03
LDLR-213ENST00000560502 SLC5A9Q2M3M2 681 aa15.23■□□□□ 0.03
LDLR-213ENST00000560502 SLC44A4Q53GD3 710 aa15.23■□□□□ 0.03
LDLR-213ENST00000560502 COBLL1Q53SF7 1204 aa15.23■□□□□ 0.03
LDLR-213ENST00000560502 ZNF658Q5TYW1 1059 aaPredicted RBP15.23■□□□□ 0.03
LDLR-213ENST00000560502 SLC8B1Q6J4K2 584 aa15.23■□□□□ 0.03
LDLR-213ENST00000560502 POTEHQ6S545 545 aa15.23■□□□□ 0.03
LDLR-213ENST00000560502 SARM1Q6SZW1 724 aa15.23■□□□□ 0.03
LDLR-213ENST00000560502 ALKAL1Q6UXT8 129 aa15.23■□□□□ 0.03
LDLR-213ENST00000560502 ANKS3Q6ZW76 656 aa15.23■□□□□ 0.03
LDLR-213ENST00000560502 LUZP1Q86V48 1076 aa15.23■□□□□ 0.03
LDLR-213ENST00000560502 CEP120Q8N960 986 aa15.23■□□□□ 0.03
LDLR-213ENST00000560502 RMDN1Q96DB5 314 aa15.23■□□□□ 0.03
LDLR-213ENST00000560502 IFT74Q96LB3 600 aa15.23■□□□□ 0.03
LDLR-213ENST00000560502 CDT1Q9H211 546 aa15.23■□□□□ 0.03
LDLR-213ENST00000560502 BHMT2Q9H2M3 363 aa15.23■□□□□ 0.03
LDLR-213ENST00000560502 POLD4Q9HCU8 107 aa15.23■□□□□ 0.03
LDLR-213ENST00000560502 PTPRHQ9HD43 1115 aa15.23■□□□□ 0.03
LDLR-213ENST00000560502 MTF2Q9Y483 593 aaPredicted RBP15.23■□□□□ 0.03
LDLR-213ENST00000560502 PHLPP2Q6ZVD8 1323 aa15.22■□□□□ 0.03
LDLR-213ENST00000560502 SMIM28A0A1B0GU29 152 aa15.22■□□□□ 0.03
LDLR-213ENST00000560502 ARHGEF37A1IGU5 675 aa15.22■□□□□ 0.03
LDLR-213ENST00000560502 I3L4J1 428 aa15.22■□□□□ 0.03
LDLR-213ENST00000560502 TBC1D4O60343 1298 aa15.22■□□□□ 0.03
LDLR-213ENST00000560502 BRCC3P46736 316 aa15.22■□□□□ 0.03
LDLR-213ENST00000560502 PFKPQ01813 784 aa15.22■□□□□ 0.03
LDLR-213ENST00000560502 ROR1Q01973 937 aa15.22■□□□□ 0.03
LDLR-213ENST00000560502 CUL4BQ13620 913 aa15.22■□□□□ 0.03
LDLR-213ENST00000560502 ZNF528Q3MIS6 628 aa15.22■□□□□ 0.03
LDLR-213ENST00000560502 APBB1IPQ7Z5R6 666 aaPredicted RBP15.22■□□□□ 0.03
LDLR-213ENST00000560502 DHX40Q8IX18 779 aaKnown RBP15.22■□□□□ 0.03
LDLR-213ENST00000560502 SUMF1Q8NBK3 374 aa15.22■□□□□ 0.03
LDLR-213ENST00000560502 ING5Q8WYH8 240 aa15.22■□□□□ 0.03
LDLR-213ENST00000560502 PDLIM2Q96JY6 352 aa15.22■□□□□ 0.03
LDLR-213ENST00000560502 LTB4R2Q9NPC1 389 aa15.22■□□□□ 0.03
LDLR-213ENST00000560502 FBXO4Q9UKT5 387 aa15.22■□□□□ 0.03
LDLR-213ENST00000560502 MYH11P35749 1972 aa15.22■□□□□ 0.03
LDLR-213ENST00000560502 SHISA7A6NL88 538 aa15.21■□□□□ 0.03
LDLR-213ENST00000560502 ABLIM1O14639 778 aa15.21■□□□□ 0.03
LDLR-213ENST00000560502 TRAPPC3O43617 180 aa15.21■□□□□ 0.03
LDLR-213ENST00000560502 ECI2O75521 394 aa15.21■□□□□ 0.03
LDLR-213ENST00000560502 ABLIM3O94929 683 aa15.21■□□□□ 0.03
LDLR-213ENST00000560502 RHOP08100 348 aa15.21■□□□□ 0.03
LDLR-213ENST00000560502 BMP6P22004 513 aa15.21■□□□□ 0.03
LDLR-213ENST00000560502 MAGEA9P43362 315 aa15.21■□□□□ 0.03
LDLR-213ENST00000560502 STIM1Q13586 685 aa15.21■□□□□ 0.03
LDLR-213ENST00000560502 UNC13DQ70J99 1090 aa15.21■□□□□ 0.03
LDLR-213ENST00000560502 TAS1R3Q7RTX0 852 aa15.21■□□□□ 0.03
LDLR-213ENST00000560502 KIAA2013Q8IYS2 634 aa15.21■□□□□ 0.03
LDLR-213ENST00000560502 DAW1Q8N136 415 aa15.21■□□□□ 0.03
LDLR-213ENST00000560502 AOPEPQ8N6M6 819 aa15.21■□□□□ 0.03
LDLR-213ENST00000560502 ZNF461Q8TAF7 563 aa15.21■□□□□ 0.03
LDLR-213ENST00000560502 ENOX1Q8TC92 643 aaKnown RBP15.21■□□□□ 0.03
LDLR-213ENST00000560502 RUBCNQ92622 972 aa15.21■□□□□ 0.03
LDLR-213ENST00000560502 CLDN23Q96B33 292 aa15.21■□□□□ 0.03
LDLR-213ENST00000560502 ACO2Q99798 780 aaKnown RBP15.21■□□□□ 0.03
LDLR-213ENST00000560502 BCO2Q9BYV7 579 aa15.21■□□□□ 0.03
LDLR-213ENST00000560502 EXOC1Q9NV70 894 aa15.21■□□□□ 0.03
LDLR-213ENST00000560502 GDE1Q9NZC3 331 aa15.21■□□□□ 0.03
LDLR-213ENST00000560502 KCND2Q9NZV8 630 aa15.21■□□□□ 0.03
LDLR-213ENST00000560502 ARHGAP28Q9P2N2 729 aa15.21■□□□□ 0.03
LDLR-213ENST00000560502 KIAA1024Q9UPX6 916 aa15.21■□□□□ 0.03
LDLR-213ENST00000560502 DNM3Q9UQ16 869 aa15.21■□□□□ 0.03
LDLR-213ENST00000560502 MRPS23Q9Y3D9 190 aaKnown RBP15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms