RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-233ENST00000557529 CD58P19256 250 aa13.33□□□□□ -0.27
SHMT2-233ENST00000557529 THPOP40225 353 aa13.33□□□□□ -0.27
SHMT2-233ENST00000557529 CKAP4Q07065 602 aaKnown RBP13.33□□□□□ -0.27
SHMT2-233ENST00000557529 ZBTB6Q15916 424 aa13.33□□□□□ -0.27
SHMT2-233ENST00000557529 WDR72Q3MJ13 1102 aa13.33□□□□□ -0.27
SHMT2-233ENST00000557529 XKR4Q5GH76 650 aa13.33□□□□□ -0.27
SHMT2-233ENST00000557529 LHX8Q68G74 356 aa13.33□□□□□ -0.27
SHMT2-233ENST00000557529 SCARA3Q6AZY7 606 aa13.33□□□□□ -0.27
SHMT2-233ENST00000557529 TWF2Q6IBS0 349 aaKnown RBP13.33□□□□□ -0.27
SHMT2-233ENST00000557529 SLC35G2Q8TBE7 412 aa13.33□□□□□ -0.27
SHMT2-233ENST00000557529 UBE2Q2Q8WVN8 375 aa13.33□□□□□ -0.27
SHMT2-233ENST00000557529 WNT8BQ93098 351 aa13.33□□□□□ -0.27
SHMT2-233ENST00000557529 SEZ6LQ9BYH1 1024 aa13.33□□□□□ -0.27
SHMT2-233ENST00000557529 THAP2Q9H0W7 228 aa13.33□□□□□ -0.27
SHMT2-233ENST00000557529 PARP2Q9UGN5 583 aa13.33□□□□□ -0.27
SHMT2-233ENST00000557529 GTF3C4Q9UKN8 822 aa13.33□□□□□ -0.27
SHMT2-233ENST00000557529 ST3GAL5Q9UNP4 418 aa13.33□□□□□ -0.27
SHMT2-233ENST00000557529 IPPQ9Y573 584 aa13.33□□□□□ -0.27
SHMT2-233ENST00000557529 TLR3O15455 904 aaKnown RBP13.32□□□□□ -0.28
SHMT2-233ENST00000557529 THAP12O43422 761 aa13.32□□□□□ -0.28
SHMT2-233ENST00000557529 TADA3O75528 432 aa13.32□□□□□ -0.28
SHMT2-233ENST00000557529 MTA2O94776 668 aa13.32□□□□□ -0.28
SHMT2-233ENST00000557529 CYP1A1P04798 512 aaPredicted RBP13.32□□□□□ -0.28
SHMT2-233ENST00000557529 PAEPP09466 180 aa13.32□□□□□ -0.28
SHMT2-233ENST00000557529 CTSHP09668 335 aa13.32□□□□□ -0.28
SHMT2-233ENST00000557529 WEE2P0C1S8 567 aa13.32□□□□□ -0.28
SHMT2-233ENST00000557529 UNGP13051 313 aaPredicted RBP13.32□□□□□ -0.28
SHMT2-233ENST00000557529 ATF7P17544 494 aaPredicted RBP13.32□□□□□ -0.28
SHMT2-233ENST00000557529 NSFP46459 744 aaKnown RBP13.32□□□□□ -0.28
SHMT2-233ENST00000557529 TNNC1P63316 161 aa13.32□□□□□ -0.28
SHMT2-233ENST00000557529 FAM26DQ5JW98 314 aa13.32□□□□□ -0.28
SHMT2-233ENST00000557529 MEI1Q5TIA1 1274 aa13.32□□□□□ -0.28
SHMT2-233ENST00000557529 SCARA5Q6ZMJ2 495 aa13.32□□□□□ -0.28
SHMT2-233ENST00000557529 SLFN11Q7Z7L1 901 aa13.32□□□□□ -0.28
SHMT2-233ENST00000557529 DNAAF5Q86Y56 855 aa13.32□□□□□ -0.28
SHMT2-233ENST00000557529 LRRC52Q8N7C0 313 aa13.32□□□□□ -0.28
SHMT2-233ENST00000557529 LRRC57Q8N9N7 239 aa13.32□□□□□ -0.28
SHMT2-233ENST00000557529 USP38Q8NB14 1042 aa13.32□□□□□ -0.28
SHMT2-233ENST00000557529 UBXN4Q92575 508 aa13.32□□□□□ -0.28
SHMT2-233ENST00000557529 RPGRIP1Q96KN7 1286 aa13.32□□□□□ -0.28
SHMT2-233ENST00000557529 APOL6Q9BWW8 343 aa13.32□□□□□ -0.28
SHMT2-233ENST00000557529 TLR10Q9BXR5 811 aa13.32□□□□□ -0.28
SHMT2-233ENST00000557529 CTTNBP2NLQ9P2B4 639 aa13.32□□□□□ -0.28
SHMT2-233ENST00000557529 PUF60Q9UHX1 559 aaKnown RBP13.32□□□□□ -0.28
SHMT2-233ENST00000557529 POLIQ9UNA4 740 aa13.32□□□□□ -0.28
SHMT2-233ENST00000557529 HES2Q9Y543 173 aa13.32□□□□□ -0.28
SHMT2-233ENST00000557529 TRIM17Q9Y577 477 aa13.32□□□□□ -0.28
SHMT2-233ENST00000557529 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.32□□□□□ -0.28
SHMT2-233ENST00000557529 PTCH2Q9Y6C5 1203 aa13.32□□□□□ -0.28
SHMT2-233ENST00000557529 SQORQ9Y6N5 450 aa13.32□□□□□ -0.28
SHMT2-233ENST00000557529 RALGAPA2Q2PPJ7 1873 aa13.32□□□□□ -0.28
SHMT2-233ENST00000557529 A0A0U1RQG5 324 aaPredicted RBP13.32□□□□□ -0.28
SHMT2-233ENST00000557529 CTAGE15A4D2H0 777 aa13.32□□□□□ -0.28
SHMT2-233ENST00000557529 LSM8O95777 96 aaKnown RBP13.32□□□□□ -0.28
SHMT2-233ENST00000557529 CYP1A2P05177 515 aa13.32□□□□□ -0.28
SHMT2-233ENST00000557529 CTAGE8P0CG41 777 aa13.32□□□□□ -0.28
SHMT2-233ENST00000557529 ZSCAN20P17040 1043 aaPredicted RBP13.32□□□□□ -0.28
SHMT2-233ENST00000557529 CYP3A5P20815 502 aa13.32□□□□□ -0.28
SHMT2-233ENST00000557529 AKAP5P24588 427 aa13.32□□□□□ -0.28
SHMT2-233ENST00000557529 CENPCQ03188 943 aa13.32□□□□□ -0.28
SHMT2-233ENST00000557529 TRIM71Q2Q1W2 868 aaKnown RBP13.32□□□□□ -0.28
SHMT2-233ENST00000557529 CTAGE6Q86UF2 777 aa13.32□□□□□ -0.28
SHMT2-233ENST00000557529 CTAGE4Q8IX94 777 aa13.32□□□□□ -0.28
SHMT2-233ENST00000557529 SMG8Q8ND04 991 aaKnown RBP13.32□□□□□ -0.28
SHMT2-233ENST00000557529 ZNF606Q8WXB4 792 aa13.32□□□□□ -0.28
SHMT2-233ENST00000557529 GOLGA1Q92805 767 aa13.32□□□□□ -0.28
SHMT2-233ENST00000557529 ZNF653Q96CK0 615 aa13.32□□□□□ -0.28
SHMT2-233ENST00000557529 ARHGEF26Q96DR7 871 aa13.32□□□□□ -0.28
SHMT2-233ENST00000557529 ZMAT2Q96NC0 199 aaKnown RBP13.32□□□□□ -0.28
SHMT2-233ENST00000557529 OSBPL9Q96SU4 736 aa13.32□□□□□ -0.28
SHMT2-233ENST00000557529 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.32□□□□□ -0.283e-7■■■□□ 15.7
SHMT2-233ENST00000557529 ERVK-5Q9HDB9 667 aa13.32□□□□□ -0.28
SHMT2-233ENST00000557529 UVRAGQ9P2Y5 699 aa13.32□□□□□ -0.28
SHMT2-233ENST00000557529 RNF14Q9UBS8 474 aa13.32□□□□□ -0.28
SHMT2-233ENST00000557529 PHF24Q9UPV7 400 aa13.32□□□□□ -0.28
SHMT2-233ENST00000557529 CITO14578 2027 aa13.31□□□□□ -0.28
SHMT2-233ENST00000557529 SMIM28A0A1B0GU29 152 aa13.31□□□□□ -0.28
SHMT2-233ENST00000557529 A0A1W2PQ45 241 aaPredicted RBP13.31□□□□□ -0.28
SHMT2-233ENST00000557529 A0A1W2PQY0 241 aa13.31□□□□□ -0.28
SHMT2-233ENST00000557529 KBTBD13C9JR72 458 aa13.31□□□□□ -0.28
SHMT2-233ENST00000557529 MED7O43513 233 aa13.31□□□□□ -0.28
SHMT2-233ENST00000557529 FTCDO95954 541 aa13.31□□□□□ -0.28
SHMT2-233ENST00000557529 PNPLA4P41247 253 aa13.31□□□□□ -0.28
SHMT2-233ENST00000557529 RAB27AP51159 221 aa13.31□□□□□ -0.28
SHMT2-233ENST00000557529 GUCY2FP51841 1108 aa13.31□□□□□ -0.28
SHMT2-233ENST00000557529 NFX1Q12986 1120 aaKnown RBP13.31□□□□□ -0.28
SHMT2-233ENST00000557529 PAK2Q13177 524 aa13.31□□□□□ -0.28
SHMT2-233ENST00000557529 RPS6KA1Q15418 735 aa13.31□□□□□ -0.28
SHMT2-233ENST00000557529 FBXO47Q5MNV8 452 aa13.31□□□□□ -0.28
SHMT2-233ENST00000557529 LIN9Q5TKA1 542 aa13.31□□□□□ -0.28
SHMT2-233ENST00000557529 PEX26Q7Z412 305 aa13.31□□□□□ -0.28
SHMT2-233ENST00000557529 DAAM2Q86T65 1068 aa13.31□□□□□ -0.28
SHMT2-233ENST00000557529 SLC43A3Q8NBI5 491 aa13.31□□□□□ -0.28
SHMT2-233ENST00000557529 CAGE1Q8TC20 777 aa13.31□□□□□ -0.28
SHMT2-233ENST00000557529 VCPIP1Q96JH7 1222 aa13.31□□□□□ -0.28
SHMT2-233ENST00000557529 TRAIPQ9BWF2 469 aa13.31□□□□□ -0.28
SHMT2-233ENST00000557529 ZNF518BQ9C0D4 1074 aa13.31□□□□□ -0.28
SHMT2-233ENST00000557529 SMYD3Q9H7B4 428 aa13.31□□□□□ -0.28
SHMT2-233ENST00000557529 AVENQ9NQS1 362 aaPredicted RBP13.31□□□□□ -0.28
SHMT2-233ENST00000557529 STARD7Q9NQZ5 370 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms