RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 SEMA4DQ92854 862 aa15.1■□□□□ 0.01
VIPAS39-208ENST00000556412 CRACR2AQ9BSW2 395 aa15.1■□□□□ 0.01
VIPAS39-208ENST00000556412 RAB20Q9NX57 234 aa15.1■□□□□ 0.01
VIPAS39-208ENST00000556412 LIMA1Q9UHB6 759 aaKnown RBP15.1■□□□□ 0.01
VIPAS39-208ENST00000556412 SNX9Q9Y5X1 595 aa15.1■□□□□ 0.01
VIPAS39-208ENST00000556412 LAMA3Q16787 3333 aa15.1■□□□□ 0.01
VIPAS39-208ENST00000556412 H3BNC9 293 aa15.1■□□□□ 0.01
VIPAS39-208ENST00000556412 C2CD2LO14523 706 aa15.1■□□□□ 0.01
VIPAS39-208ENST00000556412 GRM6O15303 877 aa15.1■□□□□ 0.01
VIPAS39-208ENST00000556412 LRRN2O75325 713 aa15.1■□□□□ 0.01
VIPAS39-208ENST00000556412 MCCD1P59942 119 aaPredicted RBP15.1■□□□□ 0.01
VIPAS39-208ENST00000556412 TNNC1P63316 161 aa15.1■□□□□ 0.01
VIPAS39-208ENST00000556412 PLCB3Q01970 1234 aa15.1■□□□□ 0.01
VIPAS39-208ENST00000556412 LRMPQ12912 555 aa15.1■□□□□ 0.01
VIPAS39-208ENST00000556412 SGSM1Q2NKQ1 1148 aa15.1■□□□□ 0.01
VIPAS39-208ENST00000556412 WDR72Q3MJ13 1102 aa15.1■□□□□ 0.01
VIPAS39-208ENST00000556412 MIIPQ5JXC2 388 aa15.1■□□□□ 0.01
VIPAS39-208ENST00000556412 SPOPLQ6IQ16 392 aa15.1■□□□□ 0.01
VIPAS39-208ENST00000556412 TAS1R1Q7RTX1 841 aa15.1■□□□□ 0.01
VIPAS39-208ENST00000556412 DDX53Q86TM3 631 aaKnown RBP15.1■□□□□ 0.01
VIPAS39-208ENST00000556412 GAS2L3Q86XJ1 694 aa15.1■□□□□ 0.01
VIPAS39-208ENST00000556412 VPS52Q8N1B4 723 aa15.1■□□□□ 0.01
VIPAS39-208ENST00000556412 MICAL1Q8TDZ2 1067 aa15.1■□□□□ 0.01
VIPAS39-208ENST00000556412 POF1BQ8WVV4 589 aa15.1■□□□□ 0.01
VIPAS39-208ENST00000556412 MMS19Q96T76 1030 aa15.1■□□□□ 0.01
VIPAS39-208ENST00000556412 VN1R3Q9BXE9 311 aa15.1■□□□□ 0.01
VIPAS39-208ENST00000556412 RBSNQ9H1K0 784 aa15.1■□□□□ 0.01
VIPAS39-208ENST00000556412 TTYH1Q9H313 450 aaPredicted RBP15.1■□□□□ 0.01
VIPAS39-208ENST00000556412 TIMM13Q9Y5L4 95 aaPredicted RBP15.1■□□□□ 0.01
VIPAS39-208ENST00000556412 CYB561D2O14569 222 aa15.09■□□□□ 0.01
VIPAS39-208ENST00000556412 ATICP31939 592 aa15.09■□□□□ 0.01
VIPAS39-208ENST00000556412 PLCB2Q00722 1185 aa15.09■□□□□ 0.01
VIPAS39-208ENST00000556412 ELAVL2Q12926 359 aaKnown RBP15.09■□□□□ 0.01
VIPAS39-208ENST00000556412 WDR44Q5JSH3 913 aa15.09■□□□□ 0.01
VIPAS39-208ENST00000556412 FKBP15Q5T1M5 1219 aa15.09■□□□□ 0.01
VIPAS39-208ENST00000556412 SCARA5Q6ZMJ2 495 aa15.09■□□□□ 0.01
VIPAS39-208ENST00000556412 TMC7Q7Z402 723 aa15.09■□□□□ 0.01
VIPAS39-208ENST00000556412 SPPL3Q8TCT6 385 aa15.09■□□□□ 0.01
VIPAS39-208ENST00000556412 SENP8Q96LD8 212 aa15.09■□□□□ 0.01
VIPAS39-208ENST00000556412 XYLT2Q9H1B5 865 aa15.09■□□□□ 0.01
VIPAS39-208ENST00000556412 PRDM12Q9H4Q4 367 aa15.09■□□□□ 0.01
VIPAS39-208ENST00000556412 ENTPD7Q9NQZ7 604 aa15.09■□□□□ 0.01
VIPAS39-208ENST00000556412 GCNT4Q9P109 453 aa15.09■□□□□ 0.01
VIPAS39-208ENST00000556412 ODC1P11926 461 aa15.08■□□□□ 0.01
VIPAS39-208ENST00000556412 TKTP29401 623 aaKnown RBP15.08■□□□□ 0.01
VIPAS39-208ENST00000556412 NOP14P78316 857 aaKnown RBP15.08■□□□□ 0.01
VIPAS39-208ENST00000556412 ZNF667Q5HYK9 610 aa15.08■□□□□ 0.01
VIPAS39-208ENST00000556412 AUTS2Q8WXX7 1259 aa15.08■□□□□ 0.01
VIPAS39-208ENST00000556412 SUSD3Q96L08 255 aa15.08■□□□□ 0.01
VIPAS39-208ENST00000556412 TCF25Q9BQ70 676 aa15.08■□□□□ 0.01
VIPAS39-208ENST00000556412 POLIQ9UNA4 740 aa15.08■□□□□ 0.01
VIPAS39-208ENST00000556412 TMEM265A0A087WTH1 108 aa15.08■□□□□ 0
VIPAS39-208ENST00000556412 P4HA2O15460 535 aa15.08■□□□□ 0
VIPAS39-208ENST00000556412 HUS1O60921 280 aa15.08■□□□□ 0
VIPAS39-208ENST00000556412 ASS1P00966 412 aaKnown RBP15.08■□□□□ 0
VIPAS39-208ENST00000556412 SOD2P04179 222 aa15.08■□□□□ 0
VIPAS39-208ENST00000556412 URODP06132 367 aa15.08■□□□□ 0
VIPAS39-208ENST00000556412 DNAJB1P25685 340 aa15.08■□□□□ 0
VIPAS39-208ENST00000556412 AARSP49588 968 aaKnown RBP eCLIP15.08■□□□□ 0
VIPAS39-208ENST00000556412 GRIN2CQ14957 1233 aa15.08■□□□□ 0
VIPAS39-208ENST00000556412 USP41Q3LFD5 358 aa15.08■□□□□ 0
VIPAS39-208ENST00000556412 FILIP1LQ4L180 1135 aa15.08■□□□□ 0
VIPAS39-208ENST00000556412 GBP6Q6ZN66 633 aa15.08■□□□□ 0
VIPAS39-208ENST00000556412 RIN2Q8WYP3 895 aaPredicted RBP15.08■□□□□ 0
VIPAS39-208ENST00000556412 TTPALQ9BTX7 342 aa15.08■□□□□ 0
VIPAS39-208ENST00000556412 HERC2P3Q9BVR0 1158 aa15.08■□□□□ 0
VIPAS39-208ENST00000556412 INTS2Q9H0H0 1204 aaKnown RBP15.08■□□□□ 0
VIPAS39-208ENST00000556412 TLR9Q9NR96 1032 aa15.08■□□□□ 0
VIPAS39-208ENST00000556412 FNDC1Q4ZHG4 1894 aaPredicted RBP15.07■□□□□ 0
VIPAS39-208ENST00000556412 LGALS16A8MUM7 142 aa15.07■□□□□ 0
VIPAS39-208ENST00000556412 P4HA1P13674 534 aa15.07■□□□□ 0
VIPAS39-208ENST00000556412 PAX3P23760 479 aa15.07■□□□□ 0
VIPAS39-208ENST00000556412 GLUD2P49448 558 aa15.07■□□□□ 0
VIPAS39-208ENST00000556412 FANCCQ00597 558 aa15.07■□□□□ 0
VIPAS39-208ENST00000556412 UBXN1Q04323 297 aa15.07■□□□□ 0
VIPAS39-208ENST00000556412 UBE3AQ05086 875 aa15.07■□□□□ 0
VIPAS39-208ENST00000556412 EXOC3L4Q17RC7 722 aa15.07■□□□□ 0
VIPAS39-208ENST00000556412 RTP2Q5QGT7 225 aa15.07■□□□□ 0
VIPAS39-208ENST00000556412 PLPP4Q5VZY2 271 aa15.07■□□□□ 0
VIPAS39-208ENST00000556412 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.07■□□□□ 0
VIPAS39-208ENST00000556412 APPL2Q8NEU8 664 aa15.07■□□□□ 0
VIPAS39-208ENST00000556412 TAF4BQ92750 862 aa15.07■□□□□ 0
VIPAS39-208ENST00000556412 PCMTD1Q96MG8 357 aaPredicted RBP15.07■□□□□ 0
VIPAS39-208ENST00000556412 APOBEC3GQ9HC16 384 aaKnown RBP15.07■□□□□ 0
VIPAS39-208ENST00000556412 STK39Q9UEW8 545 aa15.07■□□□□ 0
VIPAS39-208ENST00000556412 PCDHB8Q9UN66 801 aa15.07■□□□□ 0
VIPAS39-208ENST00000556412 LZTS1Q9Y250 596 aa15.07■□□□□ 0
VIPAS39-208ENST00000556412 COQ4Q9Y3A0 265 aa15.07■□□□□ 0
VIPAS39-208ENST00000556412 PCDHGC5Q9Y5F6 944 aa15.07■□□□□ 0
VIPAS39-208ENST00000556412 RALGAPA2Q2PPJ7 1873 aa15.07■□□□□ 0
VIPAS39-208ENST00000556412 M0QZQ0 153 aa15.06■□□□□ 0
VIPAS39-208ENST00000556412 RAP1GAPP47736 663 aa15.06■□□□□ 0
VIPAS39-208ENST00000556412 ERVFC1P60507 584 aa15.06■□□□□ 0
VIPAS39-208ENST00000556412 BMS1Q14692 1282 aaKnown RBP15.06■□□□□ 0
VIPAS39-208ENST00000556412 WSCD1Q658N2 575 aa15.06■□□□□ 0
VIPAS39-208ENST00000556412 PRSS55Q6UWB4 352 aaPredicted RBP15.06■□□□□ 0
VIPAS39-208ENST00000556412 Q7L0L9 218 aa15.06■□□□□ 0
VIPAS39-208ENST00000556412 APTXQ7Z2E3 356 aaKnown RBP15.06■□□□□ 0
VIPAS39-208ENST00000556412 METTL23Q86XA0 190 aa15.06■□□□□ 0
VIPAS39-208ENST00000556412 EHBP1Q8NDI1 1231 aa15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms