RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 CCDC38Q502W7 563 aa14.32□□□□□ -0.12
SHMT2-222ENST00000555774 IZUMO3Q5VZ72 239 aa14.32□□□□□ -0.12
SHMT2-222ENST00000555774 LMBRD2Q68DH5 695 aaPredicted RBP14.32□□□□□ -0.12
SHMT2-222ENST00000555774 HIBCHQ6NVY1 386 aaPredicted RBP14.32□□□□□ -0.12
SHMT2-222ENST00000555774 TMEM270Q6UE05 265 aa14.32□□□□□ -0.12
SHMT2-222ENST00000555774 ZCCHC9Q8N567 271 aaKnown RBP14.32□□□□□ -0.12
SHMT2-222ENST00000555774 CKAP2Q8WWK9 683 aa14.32□□□□□ -0.12
SHMT2-222ENST00000555774 CAMKK2Q96RR4 588 aa14.32□□□□□ -0.12
SHMT2-222ENST00000555774 ZNF302Q9NR11 478 aa14.32□□□□□ -0.12
SHMT2-222ENST00000555774 PHIPQ8WWQ0 1821 aa14.31□□□□□ -0.12
SHMT2-222ENST00000555774 A0A0B4J269 797 aa14.31□□□□□ -0.12
SHMT2-222ENST00000555774 K7ERI5 159 aa14.31□□□□□ -0.12
SHMT2-222ENST00000555774 O00370 1275 aa14.31□□□□□ -0.12
SHMT2-222ENST00000555774 LSM8O95777 96 aaKnown RBP14.31□□□□□ -0.12
SHMT2-222ENST00000555774 GLRA2P23416 452 aa14.31□□□□□ -0.12
SHMT2-222ENST00000555774 IFNAR2P48551 515 aa14.31□□□□□ -0.12
SHMT2-222ENST00000555774 ACOT2P49753 483 aa14.31□□□□□ -0.12
SHMT2-222ENST00000555774 ZNF132P52740 706 aa14.31□□□□□ -0.12
SHMT2-222ENST00000555774 COPS2P61201 443 aa14.31□□□□□ -0.12
SHMT2-222ENST00000555774 NOP14P78316 857 aaKnown RBP14.31□□□□□ -0.12
SHMT2-222ENST00000555774 NR1H3Q13133 447 aa14.31□□□□□ -0.12
SHMT2-222ENST00000555774 SPOPLQ6IQ16 392 aa14.31□□□□□ -0.12
SHMT2-222ENST00000555774 UBR7Q8N806 425 aa14.31□□□□□ -0.12
SHMT2-222ENST00000555774 GBP7Q8N8V2 638 aaPredicted RBP14.31□□□□□ -0.12
SHMT2-222ENST00000555774 ASAP3Q8TDY4 903 aa14.31□□□□□ -0.12
SHMT2-222ENST00000555774 FAM212AQ96EL1 285 aa14.31□□□□□ -0.12
SHMT2-222ENST00000555774 MSTO1Q9BUK6 570 aa14.31□□□□□ -0.12
SHMT2-222ENST00000555774 NIFKQ9BYG3 293 aaKnown RBP14.31□□□□□ -0.12
SHMT2-222ENST00000555774 YY1AP1Q9H869 796 aa14.31□□□□□ -0.12
SHMT2-222ENST00000555774 PICK1Q9NRD5 415 aa14.31□□□□□ -0.12
SHMT2-222ENST00000555774 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.31□□□□□ -0.12
SHMT2-222ENST00000555774 USP15Q9Y4E8 981 aaPredicted RBP14.31□□□□□ -0.12
SHMT2-222ENST00000555774 PTPRJQ12913 1337 aa14.31□□□□□ -0.12
SHMT2-222ENST00000555774 ADGRA2Q96PE1 1338 aa14.31□□□□□ -0.12
SHMT2-222ENST00000555774 SUN1O94901 812 aa14.31□□□□□ -0.12
SHMT2-222ENST00000555774 CALB1P05937 261 aa14.31□□□□□ -0.12
SHMT2-222ENST00000555774 PTPN7P35236 360 aa14.31□□□□□ -0.12
SHMT2-222ENST00000555774 WNT7BP56706 349 aa14.31□□□□□ -0.12
SHMT2-222ENST00000555774 TAP1Q03518 808 aa14.31□□□□□ -0.12
SHMT2-222ENST00000555774 LLGL1Q15334 1064 aa14.31□□□□□ -0.12
SHMT2-222ENST00000555774 TRIP13Q15645 432 aaPredicted RBP14.31□□□□□ -0.12
SHMT2-222ENST00000555774 PPP1R21Q6ZMI0 780 aa14.31□□□□□ -0.12
SHMT2-222ENST00000555774 ARHGEF18Q6ZSZ5 1173 aa14.31□□□□□ -0.12
SHMT2-222ENST00000555774 CCDC91Q7Z6B0 441 aa14.31□□□□□ -0.12
SHMT2-222ENST00000555774 SLC7A3Q8WY07 619 aa14.31□□□□□ -0.12
SHMT2-222ENST00000555774 TTC25Q96NG3 672 aa14.31□□□□□ -0.12
SHMT2-222ENST00000555774 TACO1Q9BSH4 297 aaKnown RBP14.31□□□□□ -0.12
SHMT2-222ENST00000555774 HEMGNQ9BXL5 484 aa14.31□□□□□ -0.12
SHMT2-222ENST00000555774 IMPG2Q9BZV3 1241 aa14.31□□□□□ -0.12
SHMT2-222ENST00000555774 CNTNAP2Q9UHC6 1331 aa14.31□□□□□ -0.12
SHMT2-222ENST00000555774 WDR81Q562E7 1941 aa14.3□□□□□ -0.12
SHMT2-222ENST00000555774 BRAFP15056 766 aa14.3□□□□□ -0.12
SHMT2-222ENST00000555774 PTPRAP18433 802 aa14.3□□□□□ -0.12
SHMT2-222ENST00000555774 MMP8P22894 467 aa14.3□□□□□ -0.12
SHMT2-222ENST00000555774 NFX1Q12986 1120 aaKnown RBP14.3□□□□□ -0.12
SHMT2-222ENST00000555774 TMEM132BQ14DG7 1078 aa14.3□□□□□ -0.12
SHMT2-222ENST00000555774 DNERQ8NFT8 737 aa14.3□□□□□ -0.12
SHMT2-222ENST00000555774 HAPLN2Q9GZV7 340 aa14.3□□□□□ -0.12
SHMT2-222ENST00000555774 PPME1Q9Y570 386 aa14.3□□□□□ -0.12
SHMT2-222ENST00000555774 LRRIQ4A6NIV6 560 aa14.3□□□□□ -0.12
SHMT2-222ENST00000555774 MGRN1O60291 552 aa14.3□□□□□ -0.12
SHMT2-222ENST00000555774 TJP3O95049 919 aa14.3□□□□□ -0.12
SHMT2-222ENST00000555774 RDXP35241 583 aaKnown RBP14.3□□□□□ -0.12
SHMT2-222ENST00000555774 SP4Q02446 784 aa14.3□□□□□ -0.12
SHMT2-222ENST00000555774 NCOA4Q13772 614 aa14.3□□□□□ -0.12
SHMT2-222ENST00000555774 STXBP2Q15833 593 aa14.3□□□□□ -0.12
SHMT2-222ENST00000555774 EAPPQ56P03 285 aaPredicted RBP14.3□□□□□ -0.12
SHMT2-222ENST00000555774 LLGL2Q6P1M3 1020 aa14.3□□□□□ -0.12
SHMT2-222ENST00000555774 ZPBP2Q6X784 338 aa14.3□□□□□ -0.12
SHMT2-222ENST00000555774 PHLDB2Q86SQ0 1253 aa14.3□□□□□ -0.12
SHMT2-222ENST00000555774 PASD1Q8IV76 773 aa14.3□□□□□ -0.12
SHMT2-222ENST00000555774 TMEM143Q96AN5 459 aa14.3□□□□□ -0.12
SHMT2-222ENST00000555774 CFAP57Q96MR6 1250 aa14.3□□□□□ -0.12
SHMT2-222ENST00000555774 ZNF518BQ9C0D4 1074 aa14.3□□□□□ -0.12
SHMT2-222ENST00000555774 MTFR1LQ9H019 292 aa14.3□□□□□ -0.12
SHMT2-222ENST00000555774 PPCSQ9HAB8 311 aa14.3□□□□□ -0.12
SHMT2-222ENST00000555774 EURLQ9NYK6 297 aa14.3□□□□□ -0.12
SHMT2-222ENST00000555774 NKIRAS1Q9NYS0 192 aa14.3□□□□□ -0.12
SHMT2-222ENST00000555774 SCAF8Q9UPN6 1271 aaKnown RBP14.3□□□□□ -0.12
SHMT2-222ENST00000555774 DRG1Q9Y295 367 aaKnown RBP14.3□□□□□ -0.12
SHMT2-222ENST00000555774 NUB1Q9Y5A7 615 aa14.3□□□□□ -0.12
SHMT2-222ENST00000555774 ZNF541Q9H0D2 1346 aa14.3□□□□□ -0.12
SHMT2-222ENST00000555774 RLFQ13129 1914 aa14.29□□□□□ -0.12
SHMT2-222ENST00000555774 IGKV6D-21A0A0A0MT36 114 aa14.29□□□□□ -0.12
SHMT2-222ENST00000555774 TMEM191CA6NGB0 347 aa14.29□□□□□ -0.12
SHMT2-222ENST00000555774 TCP11X1B4DZS4 312 aa14.29□□□□□ -0.12
SHMT2-222ENST00000555774 LIASO43766 372 aa14.29□□□□□ -0.12
SHMT2-222ENST00000555774 ATP2C2O75185 946 aa14.29□□□□□ -0.12
SHMT2-222ENST00000555774 TMEM191BP0C7N4 346 aa14.29□□□□□ -0.12
SHMT2-222ENST00000555774 ATP4AP20648 1035 aa14.29□□□□□ -0.12
SHMT2-222ENST00000555774 CATSPERGQ6ZRH7 1159 aa14.29□□□□□ -0.12
SHMT2-222ENST00000555774 GSTA5Q7RTV2 222 aa14.29□□□□□ -0.12
SHMT2-222ENST00000555774 TDRPQ86YL5 185 aa14.29□□□□□ -0.12
SHMT2-222ENST00000555774 WDR49Q8IV35 697 aa14.29□□□□□ -0.12
SHMT2-222ENST00000555774 BRSK2Q8IWQ3 736 aa14.29□□□□□ -0.12
SHMT2-222ENST00000555774 ANKRD35Q8N283 1001 aa14.29□□□□□ -0.12
SHMT2-222ENST00000555774 CCDC63Q8NA47 563 aa14.29□□□□□ -0.12
SHMT2-222ENST00000555774 GRAMD1AQ96CP6 724 aa14.29□□□□□ -0.12
SHMT2-222ENST00000555774 FAM84AQ96KN4 292 aa14.29□□□□□ -0.12
SHMT2-222ENST00000555774 MAGEB18Q96M61 343 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms