RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 RSPO2Q6UXX9 243 aaPredicted RBP15.35■□□□□ 0.05
SHMT2-217ENST00000555116 ANKS3Q6ZW76 656 aa15.35■□□□□ 0.05
SHMT2-217ENST00000555116 CCDC127Q96BQ5 260 aa15.35■□□□□ 0.05
SHMT2-217ENST00000555116 BORCS6Q96GS4 357 aa15.35■□□□□ 0.05
SHMT2-217ENST00000555116 POP1Q99575 1024 aaKnown RBP15.35■□□□□ 0.05
SHMT2-217ENST00000555116 CGRRF1Q99675 332 aa15.35■□□□□ 0.05
SHMT2-217ENST00000555116 KIAA1468Q9P260 1216 aa15.35■□□□□ 0.05
SHMT2-217ENST00000555116 CD207Q9UJ71 328 aa15.35■□□□□ 0.05
SHMT2-217ENST00000555116 ITGA11Q9UKX5 1188 aa15.35■□□□□ 0.05
SHMT2-217ENST00000555116 BACE2Q9Y5Z0 518 aa15.35■□□□□ 0.05
SHMT2-217ENST00000555116 C2orf16Q68DN1 1984 aa15.35■□□□□ 0.05
SHMT2-217ENST00000555116 SPTBN5Q9NRC6 3674 aaKnown RBP15.35■□□□□ 0.05
SHMT2-217ENST00000555116 NCOR1O75376 2440 aa15.34■□□□□ 0.05
SHMT2-217ENST00000555116 BIN1O00499 593 aa15.34■□□□□ 0.05
SHMT2-217ENST00000555116 TBC1D4O60343 1298 aa15.34■□□□□ 0.05
SHMT2-217ENST00000555116 C1RP00736 705 aa15.34■□□□□ 0.05
SHMT2-217ENST00000555116 ITGB3P05106 788 aa15.34■□□□□ 0.05
SHMT2-217ENST00000555116 TMEM191BP0C7N4 346 aa15.34■□□□□ 0.05
SHMT2-217ENST00000555116 SRGAP2BP0DMP2 458 aa15.34■□□□□ 0.05
SHMT2-217ENST00000555116 DLATP10515 647 aaKnown RBP15.34■□□□□ 0.05
SHMT2-217ENST00000555116 NR2F2P24468 414 aa15.34■□□□□ 0.05
SHMT2-217ENST00000555116 POLR2BP30876 1174 aaKnown RBP15.34■□□□□ 0.05
SHMT2-217ENST00000555116 CLUL1Q15846 466 aa15.34■□□□□ 0.05
SHMT2-217ENST00000555116 DUOXA2Q1HG44 320 aa15.34■□□□□ 0.05
SHMT2-217ENST00000555116 EDRF1Q3B7T1 1238 aa15.34■□□□□ 0.05
SHMT2-217ENST00000555116 LILRA6Q6PI73 481 aa15.34■□□□□ 0.05
SHMT2-217ENST00000555116 SYCE2Q6PIF2 218 aa15.34■□□□□ 0.05
SHMT2-217ENST00000555116 GLYCTKQ8IVS8 523 aa15.34■□□□□ 0.05
SHMT2-217ENST00000555116 ZNF516Q92618 1163 aa15.34■□□□□ 0.05
SHMT2-217ENST00000555116 ANKRD36BP1Q96IX9 119 aa15.34■□□□□ 0.05
SHMT2-217ENST00000555116 SENP8Q96LD8 212 aa15.34■□□□□ 0.05
SHMT2-217ENST00000555116 AGAP1Q9UPQ3 857 aa15.34■□□□□ 0.05
SHMT2-217ENST00000555116 DOCK6Q96HP0 2047 aa15.34■□□□□ 0.05
SHMT2-217ENST00000555116 MAPK13O15264 365 aa15.33■□□□□ 0.05
SHMT2-217ENST00000555116 BMP1P13497 986 aa15.33■□□□□ 0.05
SHMT2-217ENST00000555116 TAF6P49848 677 aa15.33■□□□□ 0.05
SHMT2-217ENST00000555116 PMS1P54277 932 aaKnown RBP15.33■□□□□ 0.05
SHMT2-217ENST00000555116 CLDN10P78369 228 aa15.33■□□□□ 0.05
SHMT2-217ENST00000555116 CEP135Q66GS9 1140 aa15.33■□□□□ 0.05
SHMT2-217ENST00000555116 DSTYKQ6XUX3 929 aa15.33■□□□□ 0.05
SHMT2-217ENST00000555116 CSGALNACT2Q8N6G5 542 aa15.33■□□□□ 0.05
SHMT2-217ENST00000555116 SMRP1Q8NCR6 262 aa15.33■□□□□ 0.05
SHMT2-217ENST00000555116 APPL2Q8NEU8 664 aa15.33■□□□□ 0.05
SHMT2-217ENST00000555116 PARD3BQ8TEW8 1205 aa15.33■□□□□ 0.05
SHMT2-217ENST00000555116 FNBP1Q96RU3 617 aa15.33■□□□□ 0.05
SHMT2-217ENST00000555116 S1PR5Q9H228 398 aa15.33■□□□□ 0.05
SHMT2-217ENST00000555116 UNC80Q8N2C7 3258 aa15.33■□□□□ 0.05
SHMT2-217ENST00000555116 GRXCR2A6NFK2 248 aa15.33■□□□□ 0.04
SHMT2-217ENST00000555116 PPP1R3GB7ZBB8 358 aa15.33■□□□□ 0.04
SHMT2-217ENST00000555116 AKAP3O75969 853 aa15.33■□□□□ 0.04
SHMT2-217ENST00000555116 GLUD1P00367 558 aa15.33■□□□□ 0.04
SHMT2-217ENST00000555116 TNNC2P02585 160 aa15.33■□□□□ 0.04
SHMT2-217ENST00000555116 TNNI1P19237 187 aa15.33■□□□□ 0.04
SHMT2-217ENST00000555116 TYMPP19971 482 aa15.33■□□□□ 0.04
SHMT2-217ENST00000555116 RPL13P26373 211 aaKnown RBP15.33■□□□□ 0.04
SHMT2-217ENST00000555116 RBP5P82980 135 aa15.33■□□□□ 0.04
SHMT2-217ENST00000555116 ADAM9Q13443 819 aa15.33■□□□□ 0.04
SHMT2-217ENST00000555116 ANKRD40Q6AI12 368 aa15.33■□□□□ 0.04
SHMT2-217ENST00000555116 PTCRAQ6ISU1 281 aaPredicted RBP15.33■□□□□ 0.04
SHMT2-217ENST00000555116 TRAPPC11Q7Z392 1133 aa15.33■□□□□ 0.04
SHMT2-217ENST00000555116 PALB2Q86YC2 1186 aa15.33■□□□□ 0.04
SHMT2-217ENST00000555116 ZC3H3Q8IXZ2 948 aaKnown RBP15.33■□□□□ 0.04
SHMT2-217ENST00000555116 LRRC52Q8N7C0 313 aa15.33■□□□□ 0.04
SHMT2-217ENST00000555116 ZNF560Q96MR9 790 aa15.33■□□□□ 0.04
SHMT2-217ENST00000555116 DZANK1Q9NVP4 752 aa15.33■□□□□ 0.04
SHMT2-217ENST00000555116 FRMD4BQ9Y2L6 1034 aa15.33■□□□□ 0.04
SHMT2-217ENST00000555116 TIMM13Q9Y5L4 95 aaPredicted RBP15.33■□□□□ 0.04
SHMT2-217ENST00000555116 LRRIQ3A6PVS8 624 aaPredicted RBP15.32■□□□□ 0.04
SHMT2-217ENST00000555116 H7C4K7 107 aa15.32■□□□□ 0.04
SHMT2-217ENST00000555116 MBTPS2O43462 519 aa15.32■□□□□ 0.04
SHMT2-217ENST00000555116 TGM5O43548 720 aa15.32■□□□□ 0.04
SHMT2-217ENST00000555116 OAZ2O95190 189 aa15.32■□□□□ 0.04
SHMT2-217ENST00000555116 HOXB8P17481 243 aaPredicted RBP15.32■□□□□ 0.04
SHMT2-217ENST00000555116 OR1D2P34982 312 aa15.32■□□□□ 0.04
SHMT2-217ENST00000555116 PNPLA4P41247 253 aa15.32■□□□□ 0.04
SHMT2-217ENST00000555116 SMAD4Q13485 552 aaKnown RBP15.32■□□□□ 0.04
SHMT2-217ENST00000555116 RAB33AQ14088 237 aa15.32■□□□□ 0.04
SHMT2-217ENST00000555116 PUS10Q3MIT2 529 aaKnown RBP15.32■□□□□ 0.04
SHMT2-217ENST00000555116 SV2CQ496J9 727 aa15.32■□□□□ 0.04
SHMT2-217ENST00000555116 TJAP1Q5JTD0 557 aa15.32■□□□□ 0.04
SHMT2-217ENST00000555116 SLC8B1Q6J4K2 584 aa15.32■□□□□ 0.04
SHMT2-217ENST00000555116 TRIML1Q8N9V2 468 aa15.32■□□□□ 0.04
SHMT2-217ENST00000555116 TMC2Q8TDI7 906 aa15.32■□□□□ 0.04
SHMT2-217ENST00000555116 DHTKD1Q96HY7 919 aaPredicted RBP15.32■□□□□ 0.04
SHMT2-217ENST00000555116 CDY1Q9Y6F8 540 aa15.32■□□□□ 0.04
SHMT2-217ENST00000555116 TRIM49BA6NDI0 452 aa15.31■□□□□ 0.04
SHMT2-217ENST00000555116 KPNA7A9QM74 516 aa15.31■□□□□ 0.04
SHMT2-217ENST00000555116 CYP11A1P05108 521 aa15.31■□□□□ 0.04
SHMT2-217ENST00000555116 KRT19P08727 400 aa15.31■□□□□ 0.04
SHMT2-217ENST00000555116 SPATA31D3P0C874 917 aa15.31■□□□□ 0.04
SHMT2-217ENST00000555116 CCNE1P24864 410 aa15.31■□□□□ 0.04
SHMT2-217ENST00000555116 PPP1R2P41236 205 aa15.31■□□□□ 0.04
SHMT2-217ENST00000555116 DLG4P78352 724 aa15.31■□□□□ 0.04
SHMT2-217ENST00000555116 STIM1Q13586 685 aa15.31■□□□□ 0.04
SHMT2-217ENST00000555116 C1orf220Q5T0J3 134 aa15.31■□□□□ 0.04
SHMT2-217ENST00000555116 SPATA31D4Q6ZUB0 917 aa15.31■□□□□ 0.04
SHMT2-217ENST00000555116 C12orf76Q8N812 135 aaPredicted RBP15.31■□□□□ 0.04
SHMT2-217ENST00000555116 TSG101Q99816 390 aa15.31■□□□□ 0.04
SHMT2-217ENST00000555116 MAN1C1Q9NR34 630 aa15.31■□□□□ 0.04
SHMT2-217ENST00000555116 FBXL5Q9UKA1 691 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms