RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 MYADMQ96S97 322 aa17.38■□□□□ 0.37
CCDC88C-209ENST00000554872 AFF4Q9UHB7 1163 aaKnown RBP17.38■□□□□ 0.37
CCDC88C-209ENST00000554872 USP25Q9UHP3 1055 aa17.38■□□□□ 0.37
CCDC88C-209ENST00000554872 TSC2P49815 1807 aa17.37■□□□□ 0.37
CCDC88C-209ENST00000554872 ANHXE9PGG2 379 aa17.37■□□□□ 0.37
CCDC88C-209ENST00000554872 MYL1P05976 194 aa17.37■□□□□ 0.37
CCDC88C-209ENST00000554872 ODC1P11926 461 aa17.37■□□□□ 0.37
CCDC88C-209ENST00000554872 LAMP2P13473 410 aa17.37■□□□□ 0.37
CCDC88C-209ENST00000554872 FSHRP23945 695 aa17.37■□□□□ 0.37
CCDC88C-209ENST00000554872 CMA1P23946 247 aa17.37■□□□□ 0.37
CCDC88C-209ENST00000554872 TDGQ13569 410 aa17.37■□□□□ 0.37
CCDC88C-209ENST00000554872 MYBPC2Q14324 1141 aa17.37■□□□□ 0.37
CCDC88C-209ENST00000554872 BMT2Q1RMZ1 405 aa17.37■□□□□ 0.37
CCDC88C-209ENST00000554872 FOXD4L6Q3SYB3 417 aaPredicted RBP17.37■□□□□ 0.37
CCDC88C-209ENST00000554872 FAM26FQ5R3K3 315 aa17.37■□□□□ 0.37
CCDC88C-209ENST00000554872 FOXD4L3Q6VB84 417 aaPredicted RBP17.37■□□□□ 0.37
CCDC88C-209ENST00000554872 GRASPQ7Z6J2 395 aaPredicted RBP17.37■□□□□ 0.37
CCDC88C-209ENST00000554872 FBXL6Q8N531 539 aa17.37■□□□□ 0.37
CCDC88C-209ENST00000554872 SPRYD3Q8NCJ5 442 aa17.37■□□□□ 0.37
CCDC88C-209ENST00000554872 ZNF507Q8TCN5 953 aa17.37■□□□□ 0.37
CCDC88C-209ENST00000554872 FAM212AQ96EL1 285 aa17.37■□□□□ 0.37
CCDC88C-209ENST00000554872 KCNK12Q9HB15 430 aa17.37■□□□□ 0.37
CCDC88C-209ENST00000554872 HSFX1Q9UBD0 423 aa17.37■□□□□ 0.37
CCDC88C-209ENST00000554872 DSEQ9UL01 958 aa17.37■□□□□ 0.37
CCDC88C-209ENST00000554872 DUSP12Q9UNI6 340 aa17.37■□□□□ 0.37
CCDC88C-209ENST00000554872 HPSEQ9Y251 543 aa17.37■□□□□ 0.37
CCDC88C-209ENST00000554872 MUC6Q6W4X9 2439 aa17.36■□□□□ 0.37
CCDC88C-209ENST00000554872 PPEF2O14830 753 aa17.36■□□□□ 0.37
CCDC88C-209ENST00000554872 CCL16O15467 120 aa17.36■□□□□ 0.37
CCDC88C-209ENST00000554872 ACTN4O43707 911 aaKnown RBP17.36■□□□□ 0.37
CCDC88C-209ENST00000554872 MICAL2O94851 1124 aa17.36■□□□□ 0.37
CCDC88C-209ENST00000554872 PRPF6O94906 941 aaKnown RBP17.36■□□□□ 0.37
CCDC88C-209ENST00000554872 ASGR2P07307 311 aa17.36■□□□□ 0.37
CCDC88C-209ENST00000554872 GBP2P32456 591 aaPredicted RBP17.36■□□□□ 0.37
CCDC88C-209ENST00000554872 ELF1P32519 619 aa17.36■□□□□ 0.37
CCDC88C-209ENST00000554872 HOXD13P35453 343 aa17.36■□□□□ 0.37
CCDC88C-209ENST00000554872 PNPLA4P41247 253 aa17.36■□□□□ 0.37
CCDC88C-209ENST00000554872 GUCY2FP51841 1108 aa17.36■□□□□ 0.37
CCDC88C-209ENST00000554872 ARMCX5Q6P1M9 558 aa17.36■□□□□ 0.37
CCDC88C-209ENST00000554872 PBXIP1Q96AQ6 731 aa17.36■□□□□ 0.37
CCDC88C-209ENST00000554872 CBWD1Q9BRT8 395 aa17.36■□□□□ 0.37
CCDC88C-209ENST00000554872 FAM213AQ9BRX8 229 aa17.36■□□□□ 0.37
CCDC88C-209ENST00000554872 SCAND2PQ9GZW5 306 aaPredicted RBP17.36■□□□□ 0.37
CCDC88C-209ENST00000554872 KIAA1586Q9HCI6 787 aa17.36■□□□□ 0.37
CCDC88C-209ENST00000554872 DPP3Q9NY33 737 aa17.36■□□□□ 0.37
CCDC88C-209ENST00000554872 RBAKQ9NYW8 714 aaPredicted RBP17.36■□□□□ 0.37
CCDC88C-209ENST00000554872 CGNQ9P2M7 1197 aaKnown RBP17.36■□□□□ 0.37
CCDC88C-209ENST00000554872 CDH7Q9ULB5 785 aa17.36■□□□□ 0.37
CCDC88C-209ENST00000554872 MYO10Q9HD67 2058 aa17.36■□□□□ 0.37
CCDC88C-209ENST00000554872 ZDBF2Q9HCK1 2354 aa17.35■□□□□ 0.37
CCDC88C-209ENST00000554872 PRRG1O14668 218 aa17.35■□□□□ 0.37
CCDC88C-209ENST00000554872 SPTLC1O15269 473 aa17.35■□□□□ 0.37
CCDC88C-209ENST00000554872 TAF6P49848 677 aa17.35■□□□□ 0.37
CCDC88C-209ENST00000554872 GPR17Q13304 367 aa17.35■□□□□ 0.37
CCDC88C-209ENST00000554872 HTR4Q13639 388 aa17.35■□□□□ 0.37
CCDC88C-209ENST00000554872 OVOS1Q6IE37 1185 aa17.35■□□□□ 0.37
CCDC88C-209ENST00000554872 DSTYKQ6XUX3 929 aa17.35■□□□□ 0.37
CCDC88C-209ENST00000554872 GET4Q7L5D6 327 aaPredicted RBP17.35■□□□□ 0.37
CCDC88C-209ENST00000554872 USP37Q86T82 979 aa17.35■□□□□ 0.37
CCDC88C-209ENST00000554872 CEP57L1Q8IYX8 460 aa17.35■□□□□ 0.37
CCDC88C-209ENST00000554872 GPD1LQ8N335 351 aa17.35■□□□□ 0.37
CCDC88C-209ENST00000554872 TMEM130Q8N3G9 435 aa17.35■□□□□ 0.37
CCDC88C-209ENST00000554872 LRRC52Q8N7C0 313 aa17.35■□□□□ 0.37
CCDC88C-209ENST00000554872 GLIS3Q8NEA6 775 aa17.35■□□□□ 0.37
CCDC88C-209ENST00000554872 TMEM174Q8WUU8 243 aa17.35■□□□□ 0.37
CCDC88C-209ENST00000554872 SENP8Q96LD8 212 aa17.35■□□□□ 0.37
CCDC88C-209ENST00000554872 SPATA32Q96LK8 384 aa17.35■□□□□ 0.37
CCDC88C-209ENST00000554872 ZNF560Q96MR9 790 aa17.35■□□□□ 0.37
CCDC88C-209ENST00000554872 DNMT3BQ9UBC3 853 aaKnown RBP17.35■□□□□ 0.37
CCDC88C-209ENST00000554872 INSL5Q9Y5Q6 135 aa17.35■□□□□ 0.37
CCDC88C-209ENST00000554872 NOTCH4Q99466 2003 aa17.35■□□□□ 0.37
CCDC88C-209ENST00000554872 LRG1P02750 347 aa17.34■□□□□ 0.37
CCDC88C-209ENST00000554872 NUBP1P53384 320 aa17.34■□□□□ 0.37
CCDC88C-209ENST00000554872 EPHA5P54756 1037 aa17.34■□□□□ 0.37
CCDC88C-209ENST00000554872 BECN1Q14457 450 aa17.34■□□□□ 0.37
CCDC88C-209ENST00000554872 SURF1Q15526 300 aa17.34■□□□□ 0.37
CCDC88C-209ENST00000554872 SV2CQ496J9 727 aa17.34■□□□□ 0.37
CCDC88C-209ENST00000554872 PABPC1LQ4VXU2 614 aaKnown RBP17.34■□□□□ 0.37
CCDC88C-209ENST00000554872 SUGP1Q8IWZ8 645 aaKnown RBP17.34■□□□□ 0.37
CCDC88C-209ENST00000554872 C12orf56Q8IXR9 622 aa17.34■□□□□ 0.37
CCDC88C-209ENST00000554872 LEMD2Q8NC56 503 aa17.34■□□□□ 0.37
CCDC88C-209ENST00000554872 CXorf38Q8TB03 319 aa17.34■□□□□ 0.37
CCDC88C-209ENST00000554872 SPATA18Q8TC71 538 aa17.34■□□□□ 0.37
CCDC88C-209ENST00000554872 CACTINQ8WUQ7 758 aaKnown RBP17.34■□□□□ 0.37
CCDC88C-209ENST00000554872 SCFD1Q8WVM8 642 aa17.34■□□□□ 0.37
CCDC88C-209ENST00000554872 SAAL1Q96ER3 474 aa17.34■□□□□ 0.37
CCDC88C-209ENST00000554872 BORCS6Q96GS4 357 aa17.34■□□□□ 0.37
CCDC88C-209ENST00000554872 PRRX2Q99811 253 aa17.34■□□□□ 0.37
CCDC88C-209ENST00000554872 RAPGEFL1Q9UHV5 662 aa17.34■□□□□ 0.37
CCDC88C-209ENST00000554872 ITGA11Q9UKX5 1188 aa17.34■□□□□ 0.37
CCDC88C-209ENST00000554872 SCN1AP35498 2009 aa17.33■□□□□ 0.37
CCDC88C-209ENST00000554872 KMT2EQ8IZD2 1858 aa17.33■□□□□ 0.37
CCDC88C-209ENST00000554872 A0A1W2PQ27 194 aa17.33■□□□□ 0.36
CCDC88C-209ENST00000554872 A0A1W2PQ64 194 aa17.33■□□□□ 0.36
CCDC88C-209ENST00000554872 A0A1W2PQD8 194 aa17.33■□□□□ 0.36
CCDC88C-209ENST00000554872 TGFB1I1O43294 461 aa17.33■□□□□ 0.36
CCDC88C-209ENST00000554872 SEC24AO95486 1093 aa17.33■□□□□ 0.36
CCDC88C-209ENST00000554872 RHOP08100 348 aa17.33■□□□□ 0.36
CCDC88C-209ENST00000554872 CPB1P15086 417 aa17.33■□□□□ 0.36
CCDC88C-209ENST00000554872 PFKFB1P16118 471 aa17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms