RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 SYN3O14994 580 aa12.53□□□□□ -0.4
CCDC88C-208ENST00000554165 CCL16O15467 120 aa12.53□□□□□ -0.4
CCDC88C-208ENST00000554165 XPOTO43592 962 aaKnown RBP12.53□□□□□ -0.4
CCDC88C-208ENST00000554165 N4BP1O75113 896 aaKnown RBP12.53□□□□□ -0.4
CCDC88C-208ENST00000554165 GADD45BO75293 160 aaPredicted RBP12.53□□□□□ -0.4
CCDC88C-208ENST00000554165 SEC24AO95486 1093 aa12.53□□□□□ -0.4
CCDC88C-208ENST00000554165 C8AP07357 584 aa12.53□□□□□ -0.4
CCDC88C-208ENST00000554165 ROR1Q01973 937 aa12.53□□□□□ -0.4
CCDC88C-208ENST00000554165 SNW1Q13573 536 aaKnown RBP12.53□□□□□ -0.4
CCDC88C-208ENST00000554165 KNOP1Q1ED39 458 aaKnown RBP12.53□□□□□ -0.4
CCDC88C-208ENST00000554165 BMT2Q1RMZ1 405 aa12.53□□□□□ -0.4
CCDC88C-208ENST00000554165 PDXDC1Q6P996 788 aa12.53□□□□□ -0.4
CCDC88C-208ENST00000554165 ENGASEQ8NFI3 743 aa12.53□□□□□ -0.4
CCDC88C-208ENST00000554165 ST13P5Q8NFI4 369 aaPredicted RBP12.53□□□□□ -0.4
CCDC88C-208ENST00000554165 CXorf38Q8TB03 319 aa12.53□□□□□ -0.4
CCDC88C-208ENST00000554165 SLC7A14Q8TBB6 771 aa12.53□□□□□ -0.4
CCDC88C-208ENST00000554165 BORCS6Q96GS4 357 aa12.53□□□□□ -0.4
CCDC88C-208ENST00000554165 TSPAN18Q96SJ8 248 aa12.53□□□□□ -0.4
CCDC88C-208ENST00000554165 TMEM209Q96SK2 561 aa12.53□□□□□ -0.4
CCDC88C-208ENST00000554165 POP1Q99575 1024 aaKnown RBP12.53□□□□□ -0.4
CCDC88C-208ENST00000554165 PRKD2Q9BZL6 878 aa12.53□□□□□ -0.4
CCDC88C-208ENST00000554165 MTMR12Q9C0I1 747 aa12.53□□□□□ -0.4
CCDC88C-208ENST00000554165 GZF1Q9H116 711 aaPredicted RBP12.53□□□□□ -0.4
CCDC88C-208ENST00000554165 PLEKHA4Q9H4M7 779 aa12.53□□□□□ -0.4
CCDC88C-208ENST00000554165 C11orf16Q9NQ32 467 aa12.53□□□□□ -0.4
CCDC88C-208ENST00000554165 SIX4Q9UIU6 781 aa12.53□□□□□ -0.4
CCDC88C-208ENST00000554165 ZNF233A6NK53 670 aa12.52□□□□□ -0.41
CCDC88C-208ENST00000554165 ABLIM3O94929 683 aa12.52□□□□□ -0.41
CCDC88C-208ENST00000554165 VNN2O95498 520 aa12.52□□□□□ -0.41
CCDC88C-208ENST00000554165 LDHAP00338 332 aaKnown RBP12.52□□□□□ -0.41
CCDC88C-208ENST00000554165 ITGB3P05106 788 aa12.52□□□□□ -0.41
CCDC88C-208ENST00000554165 POLR2BP30876 1174 aaKnown RBP12.52□□□□□ -0.41
CCDC88C-208ENST00000554165 POU5F1Q01860 360 aaKnown RBP12.52□□□□□ -0.41
CCDC88C-208ENST00000554165 PNOCQ13519 176 aa12.52□□□□□ -0.41
CCDC88C-208ENST00000554165 SLC8B1Q6J4K2 584 aa12.52□□□□□ -0.41
CCDC88C-208ENST00000554165 RNF19BQ6ZMZ0 732 aa12.52□□□□□ -0.41
CCDC88C-208ENST00000554165 SMYD4Q8IYR2 804 aaPredicted RBP12.52□□□□□ -0.41
CCDC88C-208ENST00000554165 APPL2Q8NEU8 664 aa12.52□□□□□ -0.41
CCDC88C-208ENST00000554165 CMASQ8NFW8 434 aaPredicted RBP12.52□□□□□ -0.41
CCDC88C-208ENST00000554165 PLEKHO2Q8TD55 490 aa12.52□□□□□ -0.41
CCDC88C-208ENST00000554165 HDAC7Q8WUI4 952 aa12.52□□□□□ -0.41
CCDC88C-208ENST00000554165 NECTIN4Q96NY8 510 aa12.52□□□□□ -0.41
CCDC88C-208ENST00000554165 KCTD10Q9H3F6 313 aa12.52□□□□□ -0.41
CCDC88C-208ENST00000554165 SMOC2Q9H3U7 446 aa12.52□□□□□ -0.41
CCDC88C-208ENST00000554165 HCFC1R1Q9NWW0 138 aa12.52□□□□□ -0.41
CCDC88C-208ENST00000554165 LIMD1Q9UGP4 676 aa12.52□□□□□ -0.41
CCDC88C-208ENST00000554165 AGAP1Q9UPQ3 857 aa12.52□□□□□ -0.41
CCDC88C-208ENST00000554165 UBE4BO95155 1302 aa12.52□□□□□ -0.41
CCDC88C-208ENST00000554165 GOLGA6L4A6NEF3 574 aa12.51□□□□□ -0.41
CCDC88C-208ENST00000554165 H7C4K7 107 aa12.51□□□□□ -0.41
CCDC88C-208ENST00000554165 NRG2O14511 850 aaPredicted RBP12.51□□□□□ -0.41
CCDC88C-208ENST00000554165 CYB561D2O14569 222 aa12.51□□□□□ -0.41
CCDC88C-208ENST00000554165 OAZ2O95190 189 aa12.51□□□□□ -0.41
CCDC88C-208ENST00000554165 ASGR2P07307 311 aa12.51□□□□□ -0.41
CCDC88C-208ENST00000554165 CASP4P49662 377 aa12.51□□□□□ -0.41
CCDC88C-208ENST00000554165 YWHAHQ04917 246 aaPredicted RBP12.51□□□□□ -0.41
CCDC88C-208ENST00000554165 CYP24A1Q07973 514 aa12.51□□□□□ -0.41
CCDC88C-208ENST00000554165 SNRNP35Q16560 246 aaKnown RBP12.51□□□□□ -0.41
CCDC88C-208ENST00000554165 PPM1LQ5SGD2 360 aa12.51□□□□□ -0.41
CCDC88C-208ENST00000554165 LIN9Q5TKA1 542 aa12.51□□□□□ -0.41
CCDC88C-208ENST00000554165 WSCD1Q658N2 575 aa12.51□□□□□ -0.41
CCDC88C-208ENST00000554165 C15orf39Q6ZRI6 1047 aa12.51□□□□□ -0.41
CCDC88C-208ENST00000554165 GRASPQ7Z6J2 395 aaPredicted RBP12.51□□□□□ -0.41
CCDC88C-208ENST00000554165 CSGALNACT2Q8N6G5 542 aa12.51□□□□□ -0.41
CCDC88C-208ENST00000554165 TTC9BQ8N6N2 239 aa12.51□□□□□ -0.41
CCDC88C-208ENST00000554165 XXYLT1Q8NBI6 393 aa12.51□□□□□ -0.41
CCDC88C-208ENST00000554165 OR10T2Q8NGX3 314 aa12.51□□□□□ -0.41
CCDC88C-208ENST00000554165 ZNF461Q8TAF7 563 aa12.51□□□□□ -0.41
CCDC88C-208ENST00000554165 ZNF516Q92618 1163 aa12.51□□□□□ -0.41
CCDC88C-208ENST00000554165 CCDC127Q96BQ5 260 aa12.51□□□□□ -0.41
CCDC88C-208ENST00000554165 PGLYRP2Q96PD5 576 aa12.51□□□□□ -0.41
CCDC88C-208ENST00000554165 MYADMQ96S97 322 aa12.51□□□□□ -0.41
CCDC88C-208ENST00000554165 RTP3Q9BQQ7 232 aa12.51□□□□□ -0.41
CCDC88C-208ENST00000554165 CRISPLD1Q9H336 500 aa12.51□□□□□ -0.41
CCDC88C-208ENST00000554165 PIDD1Q9HB75 910 aa12.51□□□□□ -0.41
CCDC88C-208ENST00000554165 WDR6Q9NNW5 1121 aaKnown RBP12.51□□□□□ -0.41
CCDC88C-208ENST00000554165 INTS13Q9NVM9 706 aa12.51□□□□□ -0.41
CCDC88C-208ENST00000554165 ZDHHC7Q9NXF8 308 aa12.51□□□□□ -0.41
CCDC88C-208ENST00000554165 POLIQ9UNA4 740 aa12.51□□□□□ -0.41
CCDC88C-208ENST00000554165 TECTAO75443 2155 aa12.51□□□□□ -0.41
CCDC88C-208ENST00000554165 KPNA7A9QM74 516 aa12.5□□□□□ -0.41
CCDC88C-208ENST00000554165 KIAA0391O15091 583 aaKnown RBP12.5□□□□□ -0.41
CCDC88C-208ENST00000554165 DCXO43602 365 aa12.5□□□□□ -0.41
CCDC88C-208ENST00000554165 HCRTO43612 131 aa12.5□□□□□ -0.41
CCDC88C-208ENST00000554165 RHOBTB3O94955 611 aa12.5□□□□□ -0.41
CCDC88C-208ENST00000554165 PAPLNO95428 1278 aa12.5□□□□□ -0.41
CCDC88C-208ENST00000554165 C1RP00736 705 aa12.5□□□□□ -0.41
CCDC88C-208ENST00000554165 KRT19P08727 400 aa12.5□□□□□ -0.41
CCDC88C-208ENST00000554165 DLATP10515 647 aaKnown RBP12.5□□□□□ -0.41
CCDC88C-208ENST00000554165 TAF6P49848 677 aa12.5□□□□□ -0.41
CCDC88C-208ENST00000554165 FAM160A1Q05DH4 1040 aa12.5□□□□□ -0.41
CCDC88C-208ENST00000554165 ADCY1Q08828 1119 aa12.5□□□□□ -0.41
CCDC88C-208ENST00000554165 BFSP1Q12934 665 aa12.5□□□□□ -0.41
CCDC88C-208ENST00000554165 PSMD2Q13200 908 aa12.5□□□□□ -0.41
CCDC88C-208ENST00000554165 OVOS1Q6IE37 1185 aa12.5□□□□□ -0.41
CCDC88C-208ENST00000554165 ZNF280DQ6N043 979 aa12.5□□□□□ -0.41
CCDC88C-208ENST00000554165 CCDC149Q6ZUS6 474 aa12.5□□□□□ -0.41
CCDC88C-208ENST00000554165 HS2ST1Q7LGA3 356 aa12.5□□□□□ -0.41
CCDC88C-208ENST00000554165 USP37Q86T82 979 aa12.5□□□□□ -0.41
CCDC88C-208ENST00000554165 TDRD5Q8NAT2 981 aaKnown RBP12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms