RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 PDCD7Q8N8D1 485 aaKnown RBP17.17■□□□□ 0.34
CUX1-213ENST00000549414 ZNF473Q8WTR7 871 aaKnown RBP17.17■□□□□ 0.34
CUX1-213ENST00000549414 BAP1Q92560 729 aa17.17■□□□□ 0.34
CUX1-213ENST00000549414 ACTR5Q9H9F9 607 aaPredicted RBP17.17■□□□□ 0.34
CUX1-213ENST00000549414 PFDN4Q9NQP4 134 aa17.17■□□□□ 0.34
CUX1-213ENST00000549414 TLK1Q9UKI8 766 aa17.17■□□□□ 0.34
CUX1-213ENST00000549414 GTPBP10A4D1E9 387 aaKnown RBP17.17■□□□□ 0.34
CUX1-213ENST00000549414 MYL6P60660 151 aa17.17■□□□□ 0.34
CUX1-213ENST00000549414 ATP11CQ8NB49 1132 aa17.17■□□□□ 0.34
CUX1-213ENST00000549414 TTC25Q96NG3 672 aa17.17■□□□□ 0.34
CUX1-213ENST00000549414 RANBP17Q9H2T7 1088 aaKnown RBP17.17■□□□□ 0.34
CUX1-213ENST00000549414 A1CFQ9NQ94 594 aaKnown RBP17.17■□□□□ 0.34
CUX1-213ENST00000549414 RAB6BQ9NRW1 208 aa17.17■□□□□ 0.34
CUX1-213ENST00000549414 ASTN1O14525 1302 aa17.17■□□□□ 0.34
CUX1-213ENST00000549414 HBP1O60381 514 aa17.17■□□□□ 0.34
CUX1-213ENST00000549414 MOCS2O96007 188 aaPredicted RBP17.17■□□□□ 0.34
CUX1-213ENST00000549414 SNRPFP62306 86 aaKnown RBP17.17■□□□□ 0.34
CUX1-213ENST00000549414 ARL13BQ3SXY8 428 aa17.17■□□□□ 0.34
CUX1-213ENST00000549414 SRLQ86TD4 932 aa17.17■□□□□ 0.34
CUX1-213ENST00000549414 EPN3Q9H201 632 aa17.17■□□□□ 0.34
CUX1-213ENST00000549414 TAS2R14Q9NYV8 317 aa17.17■□□□□ 0.34
CUX1-213ENST00000549414 OGTO15294 1046 aa17.17■□□□□ 0.34
CUX1-213ENST00000549414 ATP9AO75110 1047 aa17.17■□□□□ 0.34
CUX1-213ENST00000549414 ITIH2P19823 946 aa17.17■□□□□ 0.34
CUX1-213ENST00000549414 ATXN7L3BQ96GX2 97 aa17.17■□□□□ 0.34
CUX1-213ENST00000549414 RAB21Q9UL25 225 aa17.17■□□□□ 0.34
CUX1-213ENST00000549414 SLC25A27O95847 323 aa17.16■□□□□ 0.34
CUX1-213ENST00000549414 CYP3A4P08684 503 aa17.16■□□□□ 0.34
CUX1-213ENST00000549414 RBP3P10745 1247 aa17.16■□□□□ 0.34
CUX1-213ENST00000549414 SESN2P58004 480 aaPredicted RBP17.16■□□□□ 0.34
CUX1-213ENST00000549414 BIRC2Q13490 618 aa17.16■□□□□ 0.34
CUX1-213ENST00000549414 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.16■□□□□ 0.345e-7■■■■■ 64.8
CUX1-213ENST00000549414 HPDLQ96IR7 371 aa17.16■□□□□ 0.34
CUX1-213ENST00000549414 VPS11Q9H270 941 aa17.16■□□□□ 0.34
CUX1-213ENST00000549414 METTL5Q9NRN9 209 aaKnown RBP17.16■□□□□ 0.34
CUX1-213ENST00000549414 KCND1Q9NSA2 647 aa17.16■□□□□ 0.34
CUX1-213ENST00000549414 H0Y3Z8 333 aa17.16■□□□□ 0.34
CUX1-213ENST00000549414 DSG3P32926 999 aa17.16■□□□□ 0.34
CUX1-213ENST00000549414 ASPHQ12797 758 aa17.16■□□□□ 0.34
CUX1-213ENST00000549414 CCDC68Q9H2F9 335 aa17.16■□□□□ 0.34
CUX1-213ENST00000549414 KLK14Q9P0G3 267 aa17.16■□□□□ 0.34
CUX1-213ENST00000549414 VTNP04004 478 aa17.16■□□□□ 0.34
CUX1-213ENST00000549414 SLC8A1P32418 973 aa17.16■□□□□ 0.34
CUX1-213ENST00000549414 AGAP3Q96P47 875 aa17.16■□□□□ 0.34
CUX1-213ENST00000549414 CCDC78A2IDD5 438 aa17.15■□□□□ 0.34
CUX1-213ENST00000549414 GARTP22102 1010 aa17.15■□□□□ 0.34
CUX1-213ENST00000549414 NAMPTP43490 491 aa17.15■□□□□ 0.34
CUX1-213ENST00000549414 RAP1GAPP47736 663 aa17.15■□□□□ 0.34
CUX1-213ENST00000549414 TRABDQ9H4I3 376 aa17.15■□□□□ 0.34
CUX1-213ENST00000549414 PRMT7Q9NVM4 692 aaPredicted RBP17.15■□□□□ 0.34
CUX1-213ENST00000549414 PPARGC1AQ9UBK2 798 aaKnown RBP17.15■□□□□ 0.34
CUX1-213ENST00000549414 BCL9LQ86UU0 1499 aa17.15■□□□□ 0.34
CUX1-213ENST00000549414 GNAT1P11488 350 aa17.15■□□□□ 0.34
CUX1-213ENST00000549414 TAP1Q03518 808 aa17.15■□□□□ 0.34
CUX1-213ENST00000549414 ACTN3Q08043 901 aaPredicted RBP17.15■□□□□ 0.34
CUX1-213ENST00000549414 CACNB2Q08289 660 aaPredicted RBP17.15■□□□□ 0.34
CUX1-213ENST00000549414 CCDC33Q8N5R6 958 aa17.15■□□□□ 0.34
CUX1-213ENST00000549414 EMC1Q8N766 993 aa17.15■□□□□ 0.34
CUX1-213ENST00000549414 GPRC5AQ8NFJ5 357 aa17.15■□□□□ 0.34
CUX1-213ENST00000549414 SPATA18Q8TC71 538 aa17.15■□□□□ 0.34
CUX1-213ENST00000549414 PARD3BQ8TEW8 1205 aa17.15■□□□□ 0.34
CUX1-213ENST00000549414 STAP1Q9ULZ2 295 aa17.15■□□□□ 0.34
CUX1-213ENST00000549414 CHMP2BQ9UQN3 213 aa17.15■□□□□ 0.34
CUX1-213ENST00000549414 MAPK13O15264 365 aa17.15■□□□□ 0.34
CUX1-213ENST00000549414 GJB6O95452 261 aa17.15■□□□□ 0.34
CUX1-213ENST00000549414 SNHG28P0DPA3 235 aa17.15■□□□□ 0.34
CUX1-213ENST00000549414 ESRRAP11474 423 aaPredicted RBP17.15■□□□□ 0.34
CUX1-213ENST00000549414 NCF2P19878 526 aaPredicted RBP17.15■□□□□ 0.34
CUX1-213ENST00000549414 MFSD14CQ5VZR4 134 aa17.15■□□□□ 0.34
CUX1-213ENST00000549414 SPIRE2Q8WWL2 714 aa17.15■□□□□ 0.34
CUX1-213ENST00000549414 CYP3A7-CYP3A51PA0A087WV96 503 aa17.15■□□□□ 0.34
CUX1-213ENST00000549414 KRT38O76015 456 aa17.15■□□□□ 0.34
CUX1-213ENST00000549414 ATXN8OSP0DMR3 200 aa17.15■□□□□ 0.34
CUX1-213ENST00000549414 CYP2C9P11712 490 aa17.15■□□□□ 0.34
CUX1-213ENST00000549414 CYP3A7P24462 503 aa17.15■□□□□ 0.34
CUX1-213ENST00000549414 ERVK-9P63128 1117 aa17.15■□□□□ 0.34
CUX1-213ENST00000549414 PIGHQ14442 188 aaPredicted RBP17.15■□□□□ 0.34
CUX1-213ENST00000549414 KIZQ2M2Z5 673 aa17.15■□□□□ 0.34
CUX1-213ENST00000549414 KLHL38Q2WGJ6 581 aa17.15■□□□□ 0.34
CUX1-213ENST00000549414 TATDN1Q6P1N9 297 aa17.15■□□□□ 0.34
CUX1-213ENST00000549414 SH3BP5LQ7L8J4 393 aa17.15■□□□□ 0.34
CUX1-213ENST00000549414 CCDC60Q8IWA6 550 aaPredicted RBP17.15■□□□□ 0.34
CUX1-213ENST00000549414 ACTRT1Q8TDG2 376 aa17.15■□□□□ 0.34
CUX1-213ENST00000549414 EPS8L3Q8TE67 593 aaKnown RBP17.15■□□□□ 0.34
CUX1-213ENST00000549414 HSD17B14Q9BPX1 270 aa17.15■□□□□ 0.34
CUX1-213ENST00000549414 SPATC1LQ9H0A9 340 aa17.15■□□□□ 0.34
CUX1-213ENST00000549414 PRDM5Q9NQX1 630 aaPredicted RBP17.15■□□□□ 0.34
CUX1-213ENST00000549414 CDH16O75309 829 aa17.14■□□□□ 0.33
CUX1-213ENST00000549414 GPC4O75487 556 aa17.14■□□□□ 0.33
CUX1-213ENST00000549414 AGTP01019 485 aa17.14■□□□□ 0.33
CUX1-213ENST00000549414 SRGAP2BP0DMP2 458 aa17.14■□□□□ 0.33
CUX1-213ENST00000549414 GZMAP12544 262 aa17.14■□□□□ 0.33
CUX1-213ENST00000549414 FAXCQ5TGI0 409 aa17.14■□□□□ 0.33
CUX1-213ENST00000549414 AADACL2Q6P093 401 aa17.14■□□□□ 0.33
CUX1-213ENST00000549414 LRIG3Q6UXM1 1119 aa17.14■□□□□ 0.33
CUX1-213ENST00000549414 RYBPQ8N488 228 aaPredicted RBP17.14■□□□□ 0.33
CUX1-213ENST00000549414 NT5C1AQ9BXI3 368 aa17.14■□□□□ 0.33
CUX1-213ENST00000549414 TXLNGQ9NUQ3 528 aa17.14■□□□□ 0.33
CUX1-213ENST00000549414 ADM5C9JUS6 153 aa17.14■□□□□ 0.33
CUX1-213ENST00000549414 MAGEB2O15479 319 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms