RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 COLEC11Q9BWP8 271 aa17.18■□□□□ 0.34
PRPF40A-212ENST00000545856 BCO2Q9BYV7 579 aa17.18■□□□□ 0.34
PRPF40A-212ENST00000545856 NLRC5Q86WI3 1866 aa17.18■□□□□ 0.34
PRPF40A-212ENST00000545856 TSC2P49815 1807 aa17.17■□□□□ 0.34
PRPF40A-212ENST00000545856 KPNA7A9QM74 516 aa17.17■□□□□ 0.34
PRPF40A-212ENST00000545856 AKR1B15C9JRZ8 316 aaPredicted RBP17.17■□□□□ 0.34
PRPF40A-212ENST00000545856 NRDCO43847 1150 aa17.17■□□□□ 0.34
PRPF40A-212ENST00000545856 TACC1O75410 805 aa17.17■□□□□ 0.34
PRPF40A-212ENST00000545856 ALDH2P05091 517 aa17.17■□□□□ 0.34
PRPF40A-212ENST00000545856 ATP2A2P16615 1042 aaKnown RBP17.17■□□□□ 0.34
PRPF40A-212ENST00000545856 HNRNPH3P31942 346 aaKnown RBP17.17■□□□□ 0.34
PRPF40A-212ENST00000545856 EPHB4P54760 987 aa17.17■□□□□ 0.34
PRPF40A-212ENST00000545856 JAM2P57087 298 aa17.17■□□□□ 0.34
PRPF40A-212ENST00000545856 POLR2FP61218 127 aaKnown RBP17.17■□□□□ 0.34
PRPF40A-212ENST00000545856 PHLDB3Q6NSJ2 640 aa17.17■□□□□ 0.34
PRPF40A-212ENST00000545856 LIMS2Q7Z4I7 341 aa17.17■□□□□ 0.34
PRPF40A-212ENST00000545856 HERC6Q8IVU3 1022 aa17.17■□□□□ 0.34
PRPF40A-212ENST00000545856 SHC3Q92529 594 aa17.17■□□□□ 0.34
PRPF40A-212ENST00000545856 YME1L1Q96TA2 773 aa17.17■□□□□ 0.34
PRPF40A-212ENST00000545856 GDF15Q99988 308 aa17.17■□□□□ 0.34
PRPF40A-212ENST00000545856 CXCL16Q9H2A7 254 aa17.17■□□□□ 0.34
PRPF40A-212ENST00000545856 DNAJC12Q9UKB3 198 aa17.17■□□□□ 0.34
PRPF40A-212ENST00000545856 CNTN6Q9UQ52 1028 aa17.17■□□□□ 0.34
PRPF40A-212ENST00000545856 TULP1O00294 542 aaPredicted RBP17.16■□□□□ 0.34
PRPF40A-212ENST00000545856 MFAP3LO75121 409 aa17.16■□□□□ 0.34
PRPF40A-212ENST00000545856 UPP2O95045 317 aa17.16■□□□□ 0.34
PRPF40A-212ENST00000545856 ANXA13P27216 316 aa17.16■□□□□ 0.34
PRPF40A-212ENST00000545856 STAT1P42224 750 aa17.16■□□□□ 0.34
PRPF40A-212ENST00000545856 ALDH7A1P49419 539 aaKnown RBP17.16■□□□□ 0.34
PRPF40A-212ENST00000545856 CLCNKBP51801 687 aa17.16■□□□□ 0.34
PRPF40A-212ENST00000545856 AFF1P51825 1210 aaKnown RBP17.16■□□□□ 0.34
PRPF40A-212ENST00000545856 BPIFB4P59827 614 aa17.16■□□□□ 0.34
PRPF40A-212ENST00000545856 INCA1Q0VD86 236 aa17.16■□□□□ 0.34
PRPF40A-212ENST00000545856 BTG3Q14201 252 aaPredicted RBP17.16■□□□□ 0.34
PRPF40A-212ENST00000545856 UNC93AQ86WB7 457 aa17.16■□□□□ 0.34
PRPF40A-212ENST00000545856 GPR65Q8IYL9 337 aa17.16■□□□□ 0.34
PRPF40A-212ENST00000545856 PANX2Q96RD6 677 aa17.16■□□□□ 0.34
PRPF40A-212ENST00000545856 DNAJC7Q99615 494 aa17.16■□□□□ 0.34
PRPF40A-212ENST00000545856 OXCT2Q9BYC2 517 aaPredicted RBP17.16■□□□□ 0.34
PRPF40A-212ENST00000545856 NRDE2Q9H7Z3 1164 aa17.16■□□□□ 0.34
PRPF40A-212ENST00000545856 UBE2TQ9NPD8 197 aaPredicted RBP17.16■□□□□ 0.34
PRPF40A-212ENST00000545856 NUB1Q9Y5A7 615 aa17.16■□□□□ 0.34
PRPF40A-212ENST00000545856 BZW2Q9Y6E2 419 aaKnown RBP17.16■□□□□ 0.34
PRPF40A-212ENST00000545856 F8VZ95 297 aa17.15■□□□□ 0.34
PRPF40A-212ENST00000545856 M0QZQ0 153 aa17.15■□□□□ 0.34
PRPF40A-212ENST00000545856 SYN3O14994 580 aa17.15■□□□□ 0.34
PRPF40A-212ENST00000545856 HUS1O60921 280 aa17.15■□□□□ 0.34
PRPF40A-212ENST00000545856 CAPN15O75808 1086 aa17.15■□□□□ 0.34
PRPF40A-212ENST00000545856 B3GAT3O94766 335 aa17.15■□□□□ 0.34
PRPF40A-212ENST00000545856 DDHD2O94830 711 aa17.15■□□□□ 0.34
PRPF40A-212ENST00000545856 ODC1P11926 461 aa17.15■□□□□ 0.34
PRPF40A-212ENST00000545856 FERP16591 822 aa17.15■□□□□ 0.34
PRPF40A-212ENST00000545856 TYMPP19971 482 aa17.15■□□□□ 0.34
PRPF40A-212ENST00000545856 CASP14P31944 242 aa17.15■□□□□ 0.34
PRPF40A-212ENST00000545856 ASPAP45381 313 aa17.15■□□□□ 0.34
PRPF40A-212ENST00000545856 CDK17Q00537 523 aa17.15■□□□□ 0.34
PRPF40A-212ENST00000545856 IQCEQ6IPM2 695 aa17.15■□□□□ 0.34
PRPF40A-212ENST00000545856 CCDC112Q8NEF3 446 aa17.15■□□□□ 0.34
PRPF40A-212ENST00000545856 OR8K1Q8NGG5 319 aa17.15■□□□□ 0.34
PRPF40A-212ENST00000545856 BAP1Q92560 729 aa17.15■□□□□ 0.34
PRPF40A-212ENST00000545856 CLP1Q92989 425 aaKnown RBP17.15■□□□□ 0.34
PRPF40A-212ENST00000545856 SUSD3Q96L08 255 aa17.15■□□□□ 0.34
PRPF40A-212ENST00000545856 SAMD11Q96NU1 681 aa17.15■□□□□ 0.34
PRPF40A-212ENST00000545856 ZBED2Q9BTP6 218 aa17.15■□□□□ 0.34
PRPF40A-212ENST00000545856 APOBEC3GQ9HC16 384 aaKnown RBP17.15■□□□□ 0.34
PRPF40A-212ENST00000545856 ZNHIT6Q9NWK9 470 aaKnown RBP17.15■□□□□ 0.34
PRPF40A-212ENST00000545856 AIPL1Q9NZN9 384 aa17.15■□□□□ 0.34
PRPF40A-212ENST00000545856 FAN1Q9Y2M0 1017 aa17.15■□□□□ 0.34
PRPF40A-212ENST00000545856 FHOD1Q9Y613 1164 aa17.15■□□□□ 0.34
PRPF40A-212ENST00000545856 SF3B1O75533 1304 aaKnown RBP eCLIP17.15■□□□□ 0.344e-7■■■■■ 86.2
PRPF40A-212ENST00000545856 CASTOR2A6NHX0 329 aa17.15■□□□□ 0.34
PRPF40A-212ENST00000545856 CYP11A1P05108 521 aa17.15■□□□□ 0.34
PRPF40A-212ENST00000545856 IBSPP21815 317 aaPredicted RBP17.15■□□□□ 0.34
PRPF40A-212ENST00000545856 KRT9P35527 623 aa17.15■□□□□ 0.34
PRPF40A-212ENST00000545856 KLK7P49862 253 aa17.15■□□□□ 0.34
PRPF40A-212ENST00000545856 GUCY2FP51841 1108 aa17.15■□□□□ 0.34
PRPF40A-212ENST00000545856 PDXDC1Q6P996 788 aa17.15■□□□□ 0.34
PRPF40A-212ENST00000545856 ZNF280BQ86YH2 543 aa17.15■□□□□ 0.34
PRPF40A-212ENST00000545856 FIBCD1Q8N539 461 aa17.15■□□□□ 0.34
PRPF40A-212ENST00000545856 UBR7Q8N806 425 aa17.15■□□□□ 0.34
PRPF40A-212ENST00000545856 APPL2Q8NEU8 664 aa17.15■□□□□ 0.34
PRPF40A-212ENST00000545856 RNPC3Q96LT9 517 aaKnown RBP17.15■□□□□ 0.34
PRPF40A-212ENST00000545856 ZNF558Q96NG5 402 aa17.15■□□□□ 0.34
PRPF40A-212ENST00000545856 CWH43Q9H720 699 aa17.15■□□□□ 0.34
PRPF40A-212ENST00000545856 GOLGA2P5Q9HBQ8 144 aa17.15■□□□□ 0.34
PRPF40A-212ENST00000545856 CXXC1Q9P0U4 656 aaPredicted RBP17.15■□□□□ 0.34
PRPF40A-212ENST00000545856 ADAM28Q9UKQ2 775 aa17.15■□□□□ 0.34
PRPF40A-212ENST00000545856 SNX9Q9Y5X1 595 aa17.15■□□□□ 0.34
PRPF40A-212ENST00000545856 GBF1Q92538 1859 aa17.14■□□□□ 0.33
PRPF40A-212ENST00000545856 CLSTN1O94985 981 aa17.14■□□□□ 0.33
PRPF40A-212ENST00000545856 GALTP07902 379 aa17.14■□□□□ 0.33
PRPF40A-212ENST00000545856 SOX5P35711 763 aa17.14■□□□□ 0.33
PRPF40A-212ENST00000545856 PRKCIP41743 596 aa17.14■□□□□ 0.33
PRPF40A-212ENST00000545856 OR1G1P47890 313 aa17.14■□□□□ 0.33
PRPF40A-212ENST00000545856 LHX1P48742 406 aa17.14■□□□□ 0.33
PRPF40A-212ENST00000545856 RAPGEF1Q13905 1077 aa17.14■□□□□ 0.33
PRPF40A-212ENST00000545856 DRAP1Q14919 205 aaPredicted RBP17.14■□□□□ 0.33
PRPF40A-212ENST00000545856 MEA1Q16626 185 aa17.14■□□□□ 0.33
PRPF40A-212ENST00000545856 ARHGEF19Q8IW93 802 aa17.14■□□□□ 0.33
PRPF40A-212ENST00000545856 FAM71AQ8IYT1 594 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms