RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 HTRA2O43464 458 aaPredicted RBP4.76□□□□□ -1.65
VPS13A-213ENST00000539950 CD1AP06126 327 aa4.76□□□□□ -1.65
VPS13A-213ENST00000539950 SRGNP10124 158 aa4.76□□□□□ -1.65
VPS13A-213ENST00000539950 MAPK10P53779 464 aa4.76□□□□□ -1.65
VPS13A-213ENST00000539950 SLC16A1P53985 500 aa4.76□□□□□ -1.65
VPS13A-213ENST00000539950 MC2RQ01718 297 aa4.76□□□□□ -1.65
VPS13A-213ENST00000539950 CLNKQ7Z7G1 428 aa4.76□□□□□ -1.65
VPS13A-213ENST00000539950 PEG10Q86TG7 708 aaKnown RBP4.76□□□□□ -1.65
VPS13A-213ENST00000539950 TMIEQ8NEW7 156 aa4.76□□□□□ -1.65
VPS13A-213ENST00000539950 LPIN2Q92539 896 aa4.76□□□□□ -1.65
VPS13A-213ENST00000539950 KAT5Q92993 513 aa4.76□□□□□ -1.65
VPS13A-213ENST00000539950 LRIG1Q96JA1 1093 aa4.76□□□□□ -1.65
VPS13A-213ENST00000539950 MRGPRX4Q96LA9 322 aa4.76□□□□□ -1.65
VPS13A-213ENST00000539950 DMRTA2Q96SC8 542 aa4.76□□□□□ -1.65
VPS13A-213ENST00000539950 INTS13Q9NVM9 706 aa4.76□□□□□ -1.65
VPS13A-213ENST00000539950 JKAMPQ9P055 326 aa4.76□□□□□ -1.65
VPS13A-213ENST00000539950 ATP8A1Q9Y2Q0 1164 aa4.76□□□□□ -1.65
VPS13A-213ENST00000539950 PCDHB1Q9Y5F3 818 aa4.76□□□□□ -1.65
VPS13A-213ENST00000539950 KLHL33A6NCF5 533 aa4.75□□□□□ -1.65
VPS13A-213ENST00000539950 CCDC154A6NI56 674 aa4.75□□□□□ -1.65
VPS13A-213ENST00000539950 FZD9O00144 591 aa4.75□□□□□ -1.65
VPS13A-213ENST00000539950 MPPED1O15442 326 aa4.75□□□□□ -1.65
VPS13A-213ENST00000539950 PROM1O43490 865 aa4.75□□□□□ -1.65
VPS13A-213ENST00000539950 SGTAO43765 313 aa4.75□□□□□ -1.65
VPS13A-213ENST00000539950 SLC43A1O75387 559 aa4.75□□□□□ -1.65
VPS13A-213ENST00000539950 SUN1O94901 812 aa4.75□□□□□ -1.65
VPS13A-213ENST00000539950 MYBL2P10244 700 aa4.75□□□□□ -1.65
VPS13A-213ENST00000539950 RPS7P62081 194 aaKnown RBP4.75□□□□□ -1.65
VPS13A-213ENST00000539950 TLE1Q04724 770 aa4.75□□□□□ -1.65
VPS13A-213ENST00000539950 FPGSQ05932 587 aa4.75□□□□□ -1.65
VPS13A-213ENST00000539950 ZNF844Q08AG5 666 aa4.75□□□□□ -1.65
VPS13A-213ENST00000539950 DYRK1AQ13627 763 aa4.75□□□□□ -1.65
VPS13A-213ENST00000539950 SYDE2Q5VT97 1194 aa4.75□□□□□ -1.65
VPS13A-213ENST00000539950 KAZNQ674X7 775 aa4.75□□□□□ -1.65
VPS13A-213ENST00000539950 ZNF365Q70YC5 407 aa4.75□□□□□ -1.65
VPS13A-213ENST00000539950 TFAP2BQ92481 460 aa4.75□□□□□ -1.65
VPS13A-213ENST00000539950 COA7Q96BR5 231 aa4.75□□□□□ -1.65
VPS13A-213ENST00000539950 FBXL20Q96IG2 436 aa4.75□□□□□ -1.65
VPS13A-213ENST00000539950 CLPTM1LQ96KA5 538 aa4.75□□□□□ -1.65
VPS13A-213ENST00000539950 HEPHQ9BQS7 1158 aa4.75□□□□□ -1.65
VPS13A-213ENST00000539950 PACSIN1Q9BY11 444 aa4.75□□□□□ -1.65
VPS13A-213ENST00000539950 IMPG2Q9BZV3 1241 aa4.75□□□□□ -1.65
VPS13A-213ENST00000539950 CCDC8Q9H0W5 538 aaPredicted RBP4.75□□□□□ -1.65
VPS13A-213ENST00000539950 ARPP21Q9UBL0 812 aaPredicted RBP4.75□□□□□ -1.65
VPS13A-213ENST00000539950 NIPSNAP3AQ9UFN0 247 aaPredicted RBP4.75□□□□□ -1.65
VPS13A-213ENST00000539950 SERPINB13Q9UIV8 391 aa4.75□□□□□ -1.65
VPS13A-213ENST00000539950 TRHDEQ9UKU6 1024 aa4.75□□□□□ -1.65
VPS13A-213ENST00000539950 XPOTO43592 962 aaKnown RBP4.74□□□□□ -1.65
VPS13A-213ENST00000539950 ELFN1P0C7U0 828 aa4.74□□□□□ -1.65
VPS13A-213ENST00000539950 PROK1P58294 105 aa4.74□□□□□ -1.65
VPS13A-213ENST00000539950 KIF23Q02241 960 aaPredicted RBP4.74□□□□□ -1.65
VPS13A-213ENST00000539950 MTMR1Q13613 665 aa4.74□□□□□ -1.65
VPS13A-213ENST00000539950 PCBP2Q15366 365 aaKnown RBP eCLIP4.74□□□□□ -1.65
VPS13A-213ENST00000539950 AKNAD1Q5T1N1 836 aa4.74□□□□□ -1.65
VPS13A-213ENST00000539950 LRCH2Q5VUJ6 765 aa4.74□□□□□ -1.65
VPS13A-213ENST00000539950 ADGRG5Q8IZF4 528 aa4.74□□□□□ -1.65
VPS13A-213ENST00000539950 CFAP52Q8N1V2 620 aa4.74□□□□□ -1.65
VPS13A-213ENST00000539950 PDPRQ8NCN5 879 aa4.74□□□□□ -1.65
VPS13A-213ENST00000539950 FBXO41Q8TF61 875 aa4.74□□□□□ -1.65
VPS13A-213ENST00000539950 TEKT5Q96M29 485 aa4.74□□□□□ -1.65
VPS13A-213ENST00000539950 UROC1Q96N76 676 aa4.74□□□□□ -1.65
VPS13A-213ENST00000539950 SPC25Q9HBM1 224 aa4.74□□□□□ -1.65
VPS13A-213ENST00000539950 ARHGEF17Q96PE2 2063 aaPredicted RBP4.73□□□□□ -1.65
VPS13A-213ENST00000539950 ADM5C9JUS6 153 aa4.73□□□□□ -1.65
VPS13A-213ENST00000539950 TOR1BO14657 336 aa4.73□□□□□ -1.65
VPS13A-213ENST00000539950 PROP1O75360 226 aa4.73□□□□□ -1.65
VPS13A-213ENST00000539950 PPP3CBP16298 524 aa4.73□□□□□ -1.65
VPS13A-213ENST00000539950 CDKN1CP49918 316 aaPredicted RBP4.73□□□□□ -1.65
VPS13A-213ENST00000539950 ANXA11P50995 505 aaKnown RBP4.73□□□□□ -1.65
VPS13A-213ENST00000539950 GUCY2FP51841 1108 aa4.73□□□□□ -1.65
VPS13A-213ENST00000539950 HNRNPMP52272 730 aaKnown RBP eCLIP4.73□□□□□ -1.65
VPS13A-213ENST00000539950 FOXF2Q12947 444 aa4.73□□□□□ -1.65
VPS13A-213ENST00000539950 RAB39AQ14964 217 aa4.73□□□□□ -1.65
VPS13A-213ENST00000539950 GADL1Q6ZQY3 521 aa4.73□□□□□ -1.65
VPS13A-213ENST00000539950 TMPRSS9Q7Z410 1059 aa4.73□□□□□ -1.65
VPS13A-213ENST00000539950 SLC17A8Q8NDX2 589 aa4.73□□□□□ -1.65
VPS13A-213ENST00000539950 TOR1AIP2Q8NFQ8 470 aa4.73□□□□□ -1.65
VPS13A-213ENST00000539950 MYCBPAPQ8TBZ2 947 aa4.73□□□□□ -1.65
VPS13A-213ENST00000539950 NEU2Q9Y3R4 380 aa4.73□□□□□ -1.65
VPS13A-213ENST00000539950 CCDC195A0A1B0GUA6 201 aa4.72□□□□□ -1.65
VPS13A-213ENST00000539950 VWC2LB2RUY7 222 aa4.72□□□□□ -1.65
VPS13A-213ENST00000539950 E9PLN8 166 aa4.72□□□□□ -1.65
VPS13A-213ENST00000539950 INO80B-WBP1J3KQ70 363 aa4.72□□□□□ -1.65
VPS13A-213ENST00000539950 GABRDO14764 452 aa4.72□□□□□ -1.65
VPS13A-213ENST00000539950 CHRM2P08172 466 aa4.72□□□□□ -1.65
VPS13A-213ENST00000539950 GRIA3P42263 894 aa4.72□□□□□ -1.65
VPS13A-213ENST00000539950 ITKQ08881 620 aa4.72□□□□□ -1.65
VPS13A-213ENST00000539950 TXNRD1Q16881 649 aa4.72□□□□□ -1.65
VPS13A-213ENST00000539950 PREPLQ4J6C6 727 aaPredicted RBP4.72□□□□□ -1.65
VPS13A-213ENST00000539950 ZNF788Q6ZQV5 615 aa4.72□□□□□ -1.65
VPS13A-213ENST00000539950 GRASPQ7Z6J2 395 aaPredicted RBP4.72□□□□□ -1.65
VPS13A-213ENST00000539950 SRRM1Q8IYB3 904 aaKnown RBP4.72□□□□□ -1.65
VPS13A-213ENST00000539950 SH2D3CQ8N5H7 860 aa4.72□□□□□ -1.65
VPS13A-213ENST00000539950 NSUN6Q8TEA1 469 aaKnown RBP4.72□□□□□ -1.65
VPS13A-213ENST00000539950 SNX19Q92543 992 aa4.72□□□□□ -1.65
VPS13A-213ENST00000539950 MTMR8Q96EF0 704 aa4.72□□□□□ -1.65
VPS13A-213ENST00000539950 TIMP4Q99727 224 aa4.72□□□□□ -1.65
VPS13A-213ENST00000539950 VRK1Q99986 396 aaPredicted RBP4.72□□□□□ -1.65
VPS13A-213ENST00000539950 VKORC1Q9BQB6 163 aa4.72□□□□□ -1.65
VPS13A-213ENST00000539950 INO80BQ9C086 356 aaPredicted RBP4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms