RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 PCIF1Q9H4Z3 704 aa16.03■□□□□ 0.16
USP28-204ENST00000537642 ATP6V1DQ9Y5K8 247 aa16.03■□□□□ 0.16
USP28-204ENST00000537642 TIMM13Q9Y5L4 95 aaPredicted RBP16.03■□□□□ 0.16
USP28-204ENST00000537642 EXTL3O43909 919 aa16.02■□□□□ 0.16
USP28-204ENST00000537642 ARPP19P56211 112 aa16.02■□□□□ 0.16
USP28-204ENST00000537642 YWHAHQ04917 246 aaPredicted RBP16.02■□□□□ 0.16
USP28-204ENST00000537642 ARMCX5Q6P1M9 558 aa16.02■□□□□ 0.16
USP28-204ENST00000537642 DSTYKQ6XUX3 929 aa16.02■□□□□ 0.16
USP28-204ENST00000537642 GRASPQ7Z6J2 395 aaPredicted RBP16.02■□□□□ 0.16
USP28-204ENST00000537642 ZNF461Q8TAF7 563 aa16.02■□□□□ 0.16
USP28-204ENST00000537642 MYADMQ96S97 322 aa16.02■□□□□ 0.16
USP28-204ENST00000537642 DPP3Q9NY33 737 aa16.02■□□□□ 0.16
USP28-204ENST00000537642 SORCS3Q9UPU3 1222 aa16.02■□□□□ 0.16
USP28-204ENST00000537642 HPSEQ9Y251 543 aa16.02■□□□□ 0.16
USP28-204ENST00000537642 TSC2P49815 1807 aa16.02■□□□□ 0.16
USP28-204ENST00000537642 PVALEFA0A1B0GWK0 134 aa16.01■□□□□ 0.15
USP28-204ENST00000537642 TMEM221A6NGB7 291 aa16.01■□□□□ 0.15
USP28-204ENST00000537642 M0R296 226 aa16.01■□□□□ 0.15
USP28-204ENST00000537642 KLRC4O43908 158 aa16.01■□□□□ 0.15
USP28-204ENST00000537642 OAZ2O95190 189 aa16.01■□□□□ 0.15
USP28-204ENST00000537642 SEC24AO95486 1093 aa16.01■□□□□ 0.15
USP28-204ENST00000537642 POU2F2P09086 479 aa16.01■□□□□ 0.15
USP28-204ENST00000537642 GBP2P32456 591 aaPredicted RBP16.01■□□□□ 0.15
USP28-204ENST00000537642 NTHL1P78549 312 aa16.01■□□□□ 0.15
USP28-204ENST00000537642 SIGLEC14Q08ET2 396 aa16.01■□□□□ 0.15
USP28-204ENST00000537642 HFE2Q6ZVN8 426 aa16.01■□□□□ 0.15
USP28-204ENST00000537642 RTL10Q7L3V2 364 aa16.01■□□□□ 0.15
USP28-204ENST00000537642 NT5DC4Q86YG4 428 aa16.01■□□□□ 0.15
USP28-204ENST00000537642 GPD1LQ8N335 351 aa16.01■□□□□ 0.15
USP28-204ENST00000537642 SCFD1Q8WVM8 642 aa16.01■□□□□ 0.15
USP28-204ENST00000537642 PAGE5Q96GU1 130 aa16.01■□□□□ 0.15
USP28-204ENST00000537642 SENP8Q96LD8 212 aa16.01■□□□□ 0.15
USP28-204ENST00000537642 SCAND2PQ9GZW5 306 aaPredicted RBP16.01■□□□□ 0.15
USP28-204ENST00000537642 SMOC2Q9H3U7 446 aa16.01■□□□□ 0.15
USP28-204ENST00000537642 RBAKQ9NYW8 714 aaPredicted RBP16.01■□□□□ 0.15
USP28-204ENST00000537642 UBE4BO95155 1302 aa16■□□□□ 0.15
USP28-204ENST00000537642 FAM237AA0A1B0GTK4 181 aa16■□□□□ 0.15
USP28-204ENST00000537642 ARHGEF37A1IGU5 675 aa16■□□□□ 0.15
USP28-204ENST00000537642 KIAA0391O15091 583 aaKnown RBP16■□□□□ 0.15
USP28-204ENST00000537642 TGFB1I1O43294 461 aa16■□□□□ 0.15
USP28-204ENST00000537642 XYLBO75191 536 aa16■□□□□ 0.15
USP28-204ENST00000537642 ATF2P15336 505 aa16■□□□□ 0.15
USP28-204ENST00000537642 TYMPP19971 482 aa16■□□□□ 0.15
USP28-204ENST00000537642 PAX3P23760 479 aa16■□□□□ 0.15
USP28-204ENST00000537642 MTMR3Q13615 1198 aa16■□□□□ 0.15
USP28-204ENST00000537642 TPGS2Q68CL5 300 aa16■□□□□ 0.15
USP28-204ENST00000537642 GET4Q7L5D6 327 aaPredicted RBP16■□□□□ 0.15
USP28-204ENST00000537642 USP37Q86T82 979 aa16■□□□□ 0.15
USP28-204ENST00000537642 TCEAL8Q8IYN2 117 aa16■□□□□ 0.15
USP28-204ENST00000537642 NOC3LQ8WTT2 800 aaKnown RBP16■□□□□ 0.15
USP28-204ENST00000537642 ASIC4Q96FT7 647 aa16■□□□□ 0.15
USP28-204ENST00000537642 FAM84AQ96KN4 292 aa16■□□□□ 0.15
USP28-204ENST00000537642 CYP4F11Q9HBI6 524 aa16■□□□□ 0.15
USP28-204ENST00000537642 GDPD2Q9HCC8 539 aa16■□□□□ 0.15
USP28-204ENST00000537642 PDE11AQ9HCR9 933 aa16■□□□□ 0.15
USP28-204ENST00000537642 SLC39A2Q9NP94 309 aa16■□□□□ 0.15
USP28-204ENST00000537642 HCFC1R1Q9NWW0 138 aa16■□□□□ 0.15
USP28-204ENST00000537642 HSPBP1Q9NZL4 362 aa16■□□□□ 0.15
USP28-204ENST00000537642 EPS15L1Q9UBC2 864 aa16■□□□□ 0.15
USP28-204ENST00000537642 USP25Q9UHP3 1055 aa16■□□□□ 0.15
USP28-204ENST00000537642 POLIQ9UNA4 740 aa16■□□□□ 0.15
USP28-204ENST00000537642 PRRG1O14668 218 aa15.99■□□□□ 0.15
USP28-204ENST00000537642 ODC1P11926 461 aa15.99■□□□□ 0.15
USP28-204ENST00000537642 FSHRP23945 695 aa15.99■□□□□ 0.15
USP28-204ENST00000537642 ELF1P32519 619 aa15.99■□□□□ 0.15
USP28-204ENST00000537642 SYKP43405 635 aa15.99■□□□□ 0.15
USP28-204ENST00000537642 TAF6P49848 677 aa15.99■□□□□ 0.15
USP28-204ENST00000537642 NDUFA8P51970 172 aa15.99■□□□□ 0.15
USP28-204ENST00000537642 TFAMQ00059 246 aaKnown RBP15.99■□□□□ 0.15
USP28-204ENST00000537642 BMT2Q1RMZ1 405 aa15.99■□□□□ 0.15
USP28-204ENST00000537642 SCARA3Q6AZY7 606 aa15.99■□□□□ 0.15
USP28-204ENST00000537642 OVOS1Q6IE37 1185 aa15.99■□□□□ 0.15
USP28-204ENST00000537642 RNF19BQ6ZMZ0 732 aa15.99■□□□□ 0.15
USP28-204ENST00000537642 BMP8AQ7Z5Y6 402 aa15.99■□□□□ 0.15
USP28-204ENST00000537642 CBWD2Q8IUF1 395 aa15.99■□□□□ 0.15
USP28-204ENST00000537642 NELFCDQ8IXH7 590 aa15.99■□□□□ 0.15
USP28-204ENST00000537642 OXCT2Q9BYC2 517 aaPredicted RBP15.99■□□□□ 0.15
USP28-204ENST00000537642 KCNK12Q9HB15 430 aa15.99■□□□□ 0.15
USP28-204ENST00000537642 AGPAT3Q9NRZ7 376 aa15.99■□□□□ 0.15
USP28-204ENST00000537642 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.99■□□□□ 0.15
USP28-204ENST00000537642 DNMT3BQ9UBC3 853 aaKnown RBP15.99■□□□□ 0.15
USP28-204ENST00000537642 AFF4Q9UHB7 1163 aaKnown RBP15.99■□□□□ 0.15
USP28-204ENST00000537642 ZNF318Q5VUA4 2279 aa15.99■□□□□ 0.15
USP28-204ENST00000537642 A0A1W2PQ27 194 aa15.98■□□□□ 0.15
USP28-204ENST00000537642 A0A1W2PQ64 194 aa15.98■□□□□ 0.15
USP28-204ENST00000537642 A0A1W2PQD8 194 aa15.98■□□□□ 0.15
USP28-204ENST00000537642 OR6C75A6NL08 312 aa15.98■□□□□ 0.15
USP28-204ENST00000537642 TULP1O00294 542 aaPredicted RBP15.98■□□□□ 0.15
USP28-204ENST00000537642 VNN2O95498 520 aa15.98■□□□□ 0.15
USP28-204ENST00000537642 CYP11A1P05108 521 aa15.98■□□□□ 0.15
USP28-204ENST00000537642 OR4Q2P0C623 313 aa15.98■□□□□ 0.15
USP28-204ENST00000537642 CPB1P15086 417 aa15.98■□□□□ 0.15
USP28-204ENST00000537642 ADCY1Q08828 1119 aa15.98■□□□□ 0.15
USP28-204ENST00000537642 UBALD2Q8IYN6 164 aa15.98■□□□□ 0.15
USP28-204ENST00000537642 C1orf127Q8N9H9 656 aa15.98■□□□□ 0.15
USP28-204ENST00000537642 FSIP1Q8NA03 581 aa15.98■□□□□ 0.15
USP28-204ENST00000537642 CXorf38Q8TB03 319 aa15.98■□□□□ 0.15
USP28-204ENST00000537642 CACTINQ8WUQ7 758 aaKnown RBP15.98■□□□□ 0.15
USP28-204ENST00000537642 RSAD2Q8WXG1 361 aa15.98■□□□□ 0.15
USP28-204ENST00000537642 BORCS6Q96GS4 357 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms