RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 DSTYKQ6XUX3 929 aa9.2□□□□□ -0.94
USP28-203ENST00000537490 BEST2Q8NFU1 509 aa9.2□□□□□ -0.94
USP28-203ENST00000537490 RAD54LQ92698 747 aa9.2□□□□□ -0.94
USP28-203ENST00000537490 CLDN23Q96B33 292 aa9.2□□□□□ -0.94
USP28-203ENST00000537490 CALML4Q96GE6 196 aa9.2□□□□□ -0.94
USP28-203ENST00000537490 ASB16Q96NS5 453 aa9.2□□□□□ -0.94
USP28-203ENST00000537490 PGLYRP2Q96PD5 576 aa9.2□□□□□ -0.94
USP28-203ENST00000537490 FIZ1Q96SL8 496 aa9.2□□□□□ -0.94
USP28-203ENST00000537490 LRRC3Q9BY71 257 aa9.2□□□□□ -0.94
USP28-203ENST00000537490 RPF1Q9H9Y2 349 aaKnown RBP9.2□□□□□ -0.94
USP28-203ENST00000537490 PARVGQ9HBI0 331 aa9.2□□□□□ -0.94
USP28-203ENST00000537490 ZFP14Q9HCL3 533 aa9.2□□□□□ -0.94
USP28-203ENST00000537490 SPATA6Q9NWH7 488 aaPredicted RBP9.2□□□□□ -0.94
USP28-203ENST00000537490 MAFFQ9ULX9 164 aa9.2□□□□□ -0.94
USP28-203ENST00000537490 CACNA1IQ9P0X4 2223 aa9.2□□□□□ -0.94
USP28-203ENST00000537490 EP300Q09472 2414 aaPredicted RBP9.19□□□□□ -0.94
USP28-203ENST00000537490 GVINP1Q7Z2Y8 2422 aa9.19□□□□□ -0.94
USP28-203ENST00000537490 A0A0B4J269 797 aa9.19□□□□□ -0.94
USP28-203ENST00000537490 ANKRD63C9JTQ0 380 aa9.19□□□□□ -0.94
USP28-203ENST00000537490 K7ENM7 598 aa9.19□□□□□ -0.94
USP28-203ENST00000537490 HNRNPDLO14979 420 aaKnown RBP9.19□□□□□ -0.94
USP28-203ENST00000537490 SPTLC1O15269 473 aa9.19□□□□□ -0.94
USP28-203ENST00000537490 LAMTOR5O43504 91 aa9.19□□□□□ -0.94
USP28-203ENST00000537490 PLCG1P19174 1290 aa9.19□□□□□ -0.94
USP28-203ENST00000537490 NMT1P30419 496 aaKnown RBP9.19□□□□□ -0.94
USP28-203ENST00000537490 LONP1P36776 959 aaKnown RBP9.19□□□□□ -0.94
USP28-203ENST00000537490 VIPR2P41587 438 aa9.19□□□□□ -0.94
USP28-203ENST00000537490 ID4P47928 161 aa9.19□□□□□ -0.94
USP28-203ENST00000537490 GTF2BQ00403 316 aa9.19□□□□□ -0.94
USP28-203ENST00000537490 CSTF1Q05048 431 aaKnown RBP9.19□□□□□ -0.94
USP28-203ENST00000537490 DUSP4Q13115 394 aa9.19□□□□□ -0.94
USP28-203ENST00000537490 SF3A1Q15459 793 aaKnown RBP9.19□□□□□ -0.94
USP28-203ENST00000537490 TEAD2Q15562 447 aa9.19□□□□□ -0.94
USP28-203ENST00000537490 KYAT1Q16773 422 aa9.19□□□□□ -0.94
USP28-203ENST00000537490 SPATA1Q5VX52 437 aa9.19□□□□□ -0.94
USP28-203ENST00000537490 JADE1Q6IE81 842 aa9.19□□□□□ -0.94
USP28-203ENST00000537490 VITQ6UXI7 678 aa9.19□□□□□ -0.94
USP28-203ENST00000537490 ZNF852Q6ZMS4 543 aa9.19□□□□□ -0.94
USP28-203ENST00000537490 USP37Q86T82 979 aa9.19□□□□□ -0.94
USP28-203ENST00000537490 ZNF687Q8N1G0 1237 aa9.19□□□□□ -0.94
USP28-203ENST00000537490 ELMOD1Q8N336 334 aa9.19□□□□□ -0.94
USP28-203ENST00000537490 DCLK2Q8N568 766 aa9.19□□□□□ -0.94
USP28-203ENST00000537490 SUMF1Q8NBK3 374 aa9.19□□□□□ -0.94
USP28-203ENST00000537490 DNASE1L2Q92874 299 aa9.19□□□□□ -0.94
USP28-203ENST00000537490 SMARCD2Q92925 531 aa9.19□□□□□ -0.94
USP28-203ENST00000537490 FAM212AQ96EL1 285 aa9.19□□□□□ -0.94
USP28-203ENST00000537490 TMEM209Q96SK2 561 aa9.19□□□□□ -0.94
USP28-203ENST00000537490 NELL2Q99435 816 aa9.19□□□□□ -0.94
USP28-203ENST00000537490 TRMT61BQ9BVS5 477 aaKnown RBP9.19□□□□□ -0.94
USP28-203ENST00000537490 DNAJC25Q9H1X3 360 aa9.19□□□□□ -0.94
USP28-203ENST00000537490 IKZF4Q9H2S9 585 aa9.19□□□□□ -0.94
USP28-203ENST00000537490 ZHX3Q9H4I2 956 aa9.19□□□□□ -0.94
USP28-203ENST00000537490 BRD9Q9H8M2 597 aa9.19□□□□□ -0.94
USP28-203ENST00000537490 ZNF334Q9HCZ1 680 aaPredicted RBP9.19□□□□□ -0.94
USP28-203ENST00000537490 CPSF3Q9UKF6 684 aaKnown RBP9.19□□□□□ -0.94
USP28-203ENST00000537490 SLC27A5Q9Y2P5 690 aa9.19□□□□□ -0.94
USP28-203ENST00000537490 YIPF1Q9Y548 306 aa9.19□□□□□ -0.94
USP28-203ENST00000537490 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.19□□□□□ -0.94
USP28-203ENST00000537490 NCANO14594 1321 aa9.19□□□□□ -0.94
USP28-203ENST00000537490 MYH15Q9Y2K3 1946 aa9.19□□□□□ -0.94
USP28-203ENST00000537490 OR6C75A6NL08 312 aa9.18□□□□□ -0.94
USP28-203ENST00000537490 TISP43B9A030 160 aa9.18□□□□□ -0.94
USP28-203ENST00000537490 PIRO00625 290 aa9.18□□□□□ -0.94
USP28-203ENST00000537490 XPOTO43592 962 aaKnown RBP9.18□□□□□ -0.94
USP28-203ENST00000537490 BMP15O95972 392 aa9.18□□□□□ -0.94
USP28-203ENST00000537490 KRT18P05783 430 aaKnown RBP9.18□□□□□ -0.94
USP28-203ENST00000537490 NFICP08651 508 aa9.18□□□□□ -0.94
USP28-203ENST00000537490 PSMC3P17980 439 aa9.18□□□□□ -0.94
USP28-203ENST00000537490 TYMPP19971 482 aa9.18□□□□□ -0.94
USP28-203ENST00000537490 GDI1P31150 447 aa9.18□□□□□ -0.94
USP28-203ENST00000537490 DDIT3P35638 169 aa9.18□□□□□ -0.94
USP28-203ENST00000537490 MCM2P49736 904 aa9.18□□□□□ -0.94
USP28-203ENST00000537490 ACOT2P49753 483 aa9.18□□□□□ -0.94
USP28-203ENST00000537490 LILRA4P59901 499 aa9.18□□□□□ -0.94
USP28-203ENST00000537490 GPR17Q13304 367 aa9.18□□□□□ -0.94
USP28-203ENST00000537490 ZNF528Q3MIS6 628 aa9.18□□□□□ -0.94
USP28-203ENST00000537490 ZC2HC1CQ53FD0 456 aaPredicted RBP9.18□□□□□ -0.94
USP28-203ENST00000537490 OVOS1Q6IE37 1185 aa9.18□□□□□ -0.94
USP28-203ENST00000537490 CENPPQ6IPU0 288 aa9.18□□□□□ -0.94
USP28-203ENST00000537490 ZC3H14Q6PJT7 736 aaKnown RBP9.18□□□□□ -0.94
USP28-203ENST00000537490 TSSK4Q6SA08 328 aa9.18□□□□□ -0.94
USP28-203ENST00000537490 USP49Q70CQ1 688 aa9.18□□□□□ -0.94
USP28-203ENST00000537490 BRAPQ7Z569 592 aa9.18□□□□□ -0.94
USP28-203ENST00000537490 TMC8Q8IU68 726 aa9.18□□□□□ -0.94
USP28-203ENST00000537490 GPIHBP1Q8IV16 184 aa9.18□□□□□ -0.94
USP28-203ENST00000537490 MAP4K3Q8IVH8 894 aa9.18□□□□□ -0.94
USP28-203ENST00000537490 CD302Q8IX05 232 aa9.18□□□□□ -0.94
USP28-203ENST00000537490 KIAA2013Q8IYS2 634 aa9.18□□□□□ -0.94
USP28-203ENST00000537490 ATAD1Q8NBU5 361 aa9.18□□□□□ -0.94
USP28-203ENST00000537490 LEMD2Q8NC56 503 aa9.18□□□□□ -0.94
USP28-203ENST00000537490 RASSF8Q8NHQ8 419 aa9.18□□□□□ -0.94
USP28-203ENST00000537490 SHKBP1Q8TBC3 707 aa9.18□□□□□ -0.94
USP28-203ENST00000537490 ZSCAN18Q8TBC5 510 aaPredicted RBP9.18□□□□□ -0.94
USP28-203ENST00000537490 RSPRY1Q96DX4 576 aa9.18□□□□□ -0.94
USP28-203ENST00000537490 SENP8Q96LD8 212 aa9.18□□□□□ -0.94
USP28-203ENST00000537490 TSPAN18Q96SJ8 248 aa9.18□□□□□ -0.94
USP28-203ENST00000537490 MSTO1Q9BUK6 570 aa9.18□□□□□ -0.94
USP28-203ENST00000537490 OXCT2Q9BYC2 517 aaPredicted RBP9.18□□□□□ -0.94
USP28-203ENST00000537490 CCSER1Q9C0I3 900 aa9.18□□□□□ -0.94
USP28-203ENST00000537490 ASAH2Q9NR71 780 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms