RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 PTTG1IPP53801 180 aa3.6□□□□□ -1.83
CD44-238ENST00000534296 SEC24CP53992 1094 aa3.6□□□□□ -1.83
CD44-238ENST00000534296 ZNF280AP59817 542 aaPredicted RBP3.6□□□□□ -1.83
CD44-238ENST00000534296 MRPS35P82673 323 aaKnown RBP3.6□□□□□ -1.83
CD44-238ENST00000534296 FPGSQ05932 587 aa3.6□□□□□ -1.83
CD44-238ENST00000534296 CYP2A13Q16696 494 aa3.6□□□□□ -1.83
CD44-238ENST00000534296 PGS1Q32NB8 556 aa3.6□□□□□ -1.83
CD44-238ENST00000534296 KHDC1Q4VXA5 237 aaKnown RBP3.6□□□□□ -1.83
CD44-238ENST00000534296 CCDC93Q567U6 631 aa3.6□□□□□ -1.83
CD44-238ENST00000534296 SP5Q6BEB4 398 aaPredicted RBP3.6□□□□□ -1.83
CD44-238ENST00000534296 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP3.6□□□□□ -1.83
CD44-238ENST00000534296 USP45Q70EL2 814 aa3.6□□□□□ -1.83
CD44-238ENST00000534296 PDSS2Q86YH6 399 aa3.6□□□□□ -1.83
CD44-238ENST00000534296 DNAJC10Q8IXB1 793 aa3.6□□□□□ -1.83
CD44-238ENST00000534296 CPA6Q8N4T0 437 aa3.6□□□□□ -1.83
CD44-238ENST00000534296 CAGE1Q8TC20 777 aa3.6□□□□□ -1.83
CD44-238ENST00000534296 ASB10Q8WXI3 467 aa3.6□□□□□ -1.83
CD44-238ENST00000534296 LINC00476Q8WZB0 136 aa3.6□□□□□ -1.83
CD44-238ENST00000534296 SNX19Q92543 992 aa3.6□□□□□ -1.83
CD44-238ENST00000534296 DDX17Q92841 729 aaKnown RBP3.6□□□□□ -1.83
CD44-238ENST00000534296 SCAMP4Q969E2 229 aa3.6□□□□□ -1.83
CD44-238ENST00000534296 AGAP2Q99490 1192 aa3.6□□□□□ -1.83
CD44-238ENST00000534296 MAP3K14Q99558 947 aa3.6□□□□□ -1.83
CD44-238ENST00000534296 VRK1Q99986 396 aaPredicted RBP3.6□□□□□ -1.83
CD44-238ENST00000534296 RIOX1Q9H6W3 641 aa3.6□□□□□ -1.83
CD44-238ENST00000534296 CNNM1Q9NRU3 951 aa3.6□□□□□ -1.83
CD44-238ENST00000534296 INTS13Q9NVM9 706 aa3.6□□□□□ -1.83
CD44-238ENST00000534296 DKK2Q9UBU2 259 aa3.6□□□□□ -1.83
CD44-238ENST00000534296 SERPINB13Q9UIV8 391 aa3.6□□□□□ -1.83
CD44-238ENST00000534296 INSL6Q9Y581 213 aa3.6□□□□□ -1.83
CD44-238ENST00000534296 MAST3O60307 1309 aa3.6□□□□□ -1.83
CD44-238ENST00000534296 PRAMEF33A0A0G2JMD5 474 aa3.59□□□□□ -1.83
CD44-238ENST00000534296 A0A1W2PS29 197 aa3.59□□□□□ -1.83
CD44-238ENST00000534296 ZAR1LA6NP61 321 aa3.59□□□□□ -1.83
CD44-238ENST00000534296 WNT10BO00744 389 aa3.59□□□□□ -1.83
CD44-238ENST00000534296 PRAMEF10O60809 474 aa3.59□□□□□ -1.83
CD44-238ENST00000534296 OFD1O75665 1012 aa3.59□□□□□ -1.83
CD44-238ENST00000534296 ALDH1L1O75891 902 aa3.59□□□□□ -1.83
CD44-238ENST00000534296 SOAT2O75908 522 aa3.59□□□□□ -1.83
CD44-238ENST00000534296 ELANEP08246 267 aa3.59□□□□□ -1.83
CD44-238ENST00000534296 U2AF1L5P0DN76 240 aaPredicted RBP3.59□□□□□ -1.83
CD44-238ENST00000534296 KRT4P19013 534 aa3.59□□□□□ -1.83
CD44-238ENST00000534296 PDCP20941 246 aa3.59□□□□□ -1.83
CD44-238ENST00000534296 ANXA11P50995 505 aaKnown RBP3.59□□□□□ -1.83
CD44-238ENST00000534296 POU6F2P78424 691 aaPredicted RBP3.59□□□□□ -1.83
CD44-238ENST00000534296 U2AF1Q01081 240 aaKnown RBP eCLIP3.59□□□□□ -1.83
CD44-238ENST00000534296 SLFN5Q08AF3 891 aa3.59□□□□□ -1.83
CD44-238ENST00000534296 NOGQ13253 232 aa3.59□□□□□ -1.83
CD44-238ENST00000534296 ODF1Q14990 250 aa3.59□□□□□ -1.83
CD44-238ENST00000534296 GEN1Q17RS7 908 aa3.59□□□□□ -1.83
CD44-238ENST00000534296 FLYWCH1Q4VC44 716 aa3.59□□□□□ -1.83
CD44-238ENST00000534296 TAPT1Q6NXT6 567 aa3.59□□□□□ -1.83
CD44-238ENST00000534296 Q6ZNX1 250 aa3.59□□□□□ -1.83
CD44-238ENST00000534296 Q6ZPA2 131 aa3.59□□□□□ -1.83
CD44-238ENST00000534296 GPR149Q86SP6 731 aa3.59□□□□□ -1.83
CD44-238ENST00000534296 SLC17A8Q8NDX2 589 aa3.59□□□□□ -1.83
CD44-238ENST00000534296 BRIX1Q8TDN6 353 aaKnown RBP3.59□□□□□ -1.83
CD44-238ENST00000534296 FUBP1Q96AE4 644 aaKnown RBP3.59□□□□□ -1.83
CD44-238ENST00000534296 TMEM125Q96AQ2 219 aa3.59□□□□□ -1.83
CD44-238ENST00000534296 GPATCH3Q96I76 525 aa3.59□□□□□ -1.83
CD44-238ENST00000534296 Q96MF0 132 aa3.59□□□□□ -1.83
CD44-238ENST00000534296 AIFM2Q9BRQ8 373 aa3.59□□□□□ -1.83
CD44-238ENST00000534296 CNPPD1Q9BV87 410 aa3.59□□□□□ -1.83
CD44-238ENST00000534296 UNKLQ9H9P5 680 aaKnown RBP3.59□□□□□ -1.83
CD44-238ENST00000534296 TCF7L1Q9HCS4 588 aa3.59□□□□□ -1.83
CD44-238ENST00000534296 SLAMF7Q9NQ25 335 aa3.59□□□□□ -1.83
CD44-238ENST00000534296 LMBRD1Q9NUN5 540 aa3.59□□□□□ -1.83
CD44-238ENST00000534296 SYBUQ9NX95 663 aa3.59□□□□□ -1.83
CD44-238ENST00000534296 IP6K2Q9UHH9 426 aa3.59□□□□□ -1.83
CD44-238ENST00000534296 PCDHB1Q9Y5F3 818 aa3.59□□□□□ -1.83
CD44-238ENST00000534296 CCDC151A5D8V7 595 aa3.58□□□□□ -1.84
CD44-238ENST00000534296 ZNF785A8K8V0 405 aa3.58□□□□□ -1.84
CD44-238ENST00000534296 E7ENX8 843 aa3.58□□□□□ -1.84
CD44-238ENST00000534296 POLRMTO00411 1230 aaKnown RBP3.58□□□□□ -1.84
CD44-238ENST00000534296 MARCH6O60337 910 aa3.58□□□□□ -1.84
CD44-238ENST00000534296 PRSS23O95084 383 aa3.58□□□□□ -1.84
CD44-238ENST00000534296 ZRANB2O95218 330 aaKnown RBP eCLIP3.58□□□□□ -1.84
CD44-238ENST00000534296 GJB1P08034 283 aa3.58□□□□□ -1.84
CD44-238ENST00000534296 PDGFRBP09619 1106 aa3.58□□□□□ -1.84
CD44-238ENST00000534296 PF4V1P10720 104 aa3.58□□□□□ -1.84
CD44-238ENST00000534296 RARBP10826 455 aa3.58□□□□□ -1.84
CD44-238ENST00000534296 FXR1P51114 621 aaKnown RBP eCLIP3.58□□□□□ -1.84
CD44-238ENST00000534296 EPHB1P54762 984 aa3.58□□□□□ -1.84
CD44-238ENST00000534296 SATB1Q01826 763 aa3.58□□□□□ -1.84
CD44-238ENST00000534296 TAP2Q03519 686 aa3.58□□□□□ -1.84
CD44-238ENST00000534296 PIN1Q13526 163 aaPredicted RBP3.58□□□□□ -1.84
CD44-238ENST00000534296 HLXQ14774 488 aaPredicted RBP3.58□□□□□ -1.84
CD44-238ENST00000534296 NBPF8Q3BBV2 869 aa3.58□□□□□ -1.84
CD44-238ENST00000534296 IFIT1BQ5T764 474 aaKnown RBP3.58□□□□□ -1.84
CD44-238ENST00000534296 HEATR3Q7Z4Q2 680 aa3.58□□□□□ -1.84
CD44-238ENST00000534296 CFAP52Q8N1V2 620 aa3.58□□□□□ -1.84
CD44-238ENST00000534296 PDPRQ8NCN5 879 aa3.58□□□□□ -1.84
CD44-238ENST00000534296 B3GALNT2Q8NCR0 500 aa3.58□□□□□ -1.84
CD44-238ENST00000534296 ACTRT2Q8TDY3 377 aa3.58□□□□□ -1.84
CD44-238ENST00000534296 SSH3Q8TE77 659 aa3.58□□□□□ -1.84
CD44-238ENST00000534296 HOOK2Q96ED9 719 aa3.58□□□□□ -1.84
CD44-238ENST00000534296 CDK5RAP3Q96JB5 506 aa3.58□□□□□ -1.84
CD44-238ENST00000534296 CCDC136Q96JN2 1154 aa3.58□□□□□ -1.84
CD44-238ENST00000534296 KLHL32Q96NJ5 620 aa3.58□□□□□ -1.84
CD44-238ENST00000534296 TRIB1Q96RU8 372 aa3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms