RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 CHPFQ8IZ52 775 aa5.93□□□□□ -1.46
CD44-236ENST00000533222 TRIML2Q8N7C3 387 aa5.93□□□□□ -1.46
CD44-236ENST00000533222 TEX19Q8NA77 164 aa5.93□□□□□ -1.46
CD44-236ENST00000533222 SMARCC2Q8TAQ2 1214 aa5.93□□□□□ -1.46
CD44-236ENST00000533222 PIP4K2CQ8TBX8 421 aa5.93□□□□□ -1.46
CD44-236ENST00000533222 DQX1Q8TE96 717 aaKnown RBP5.93□□□□□ -1.46
CD44-236ENST00000533222 DYDC1Q8WWB3 177 aa5.93□□□□□ -1.46
CD44-236ENST00000533222 ATL1Q8WXF7 558 aa5.93□□□□□ -1.46
CD44-236ENST00000533222 GIMAP5Q96F15 307 aa5.93□□□□□ -1.46
CD44-236ENST00000533222 ABHD8Q96I13 439 aa5.93□□□□□ -1.46
CD44-236ENST00000533222 CEP19Q96LK0 163 aa5.93□□□□□ -1.46
CD44-236ENST00000533222 JAKMIP1Q96N16 626 aaKnown RBP5.93□□□□□ -1.46
CD44-236ENST00000533222 ALG1Q9BT22 464 aa5.93□□□□□ -1.46
CD44-236ENST00000533222 TRIM8Q9BZR9 551 aa5.93□□□□□ -1.46
CD44-236ENST00000533222 CLIC5Q9NZA1 410 aa5.93□□□□□ -1.46
CD44-236ENST00000533222 SUCLA2Q9P2R7 463 aaPredicted RBP5.93□□□□□ -1.46
CD44-236ENST00000533222 PYCARDQ9ULZ3 195 aa5.93□□□□□ -1.46
CD44-236ENST00000533222 G3BP2Q9UN86 482 aaKnown RBP5.93□□□□□ -1.46
CD44-236ENST00000533222 ATP11BQ9Y2G3 1177 aa5.93□□□□□ -1.46
CD44-236ENST00000533222 C15orf41Q9Y2V0 281 aa5.93□□□□□ -1.46
CD44-236ENST00000533222 COQ6Q9Y2Z9 468 aa5.93□□□□□ -1.46
CD44-236ENST00000533222 TIMM22Q9Y584 194 aa5.93□□□□□ -1.46
CD44-236ENST00000533222 PCDHB4Q9Y5E5 795 aa5.93□□□□□ -1.46
CD44-236ENST00000533222 SPATA31E1Q6ZUB1 1445 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 KIF21AQ7Z4S6 1674 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 MYOCOSA0A1B0GUC4 107 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 LINC00854A0A1B0GVQ3 168 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 SYCE3A1L190 88 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 FAM83GA6ND36 823 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 F8W031 263 aaPredicted RBP5.92□□□□□ -1.46
CD44-236ENST00000533222 H0Y3Z8 333 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 MUSKO15146 869 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 KMOO15229 486 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 SPTLC2O15270 562 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 ASAP2O43150 1006 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 NMT2O60551 498 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 EFCAB14O75071 495 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 RNASEH2AO75792 299 aaKnown RBP5.92□□□□□ -1.46
CD44-236ENST00000533222 OLFM2O95897 454 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 CYBBP04839 570 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 CKMP06732 381 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 LINGO3P0C6S8 592 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 GHRP10912 638 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 EPB41P11171 864 aaKnown RBP5.92□□□□□ -1.46
CD44-236ENST00000533222 PYGMP11217 842 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 GNAT2P19087 354 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 CALB2P22676 271 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 HSD3B2P26439 372 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 PRKAR2BP31323 418 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 VIPR1P32241 457 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 CA8P35219 290 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 MAPKAPK2P49137 400 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 SCNN1BP51168 640 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 UBXN1Q04323 297 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 LRRC74AQ0VAA2 488 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 PAK1Q13153 545 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 KIF22Q14807 665 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 SF3B3Q15393 1217 aaKnown RBP5.92□□□□□ -1.46
CD44-236ENST00000533222 LONRF1Q17RB8 773 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 INSCQ1MX18 579 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 C15orf59Q2T9L4 293 aaPredicted RBP5.92□□□□□ -1.46
CD44-236ENST00000533222 KRT71Q3SY84 523 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 SLC44A4Q53GD3 710 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 LACTB2Q53H82 288 aaPredicted RBP5.92□□□□□ -1.46
CD44-236ENST00000533222 C10orf76Q5T2E6 689 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 PPP4R3AQ6IN85 833 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 TMEM53Q6P2H8 277 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 KLC3Q6P597 504 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 SARM1Q6SZW1 724 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 PAQR3Q6TCH7 311 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 ZNF365Q70YC5 407 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 CABP7Q86V35 215 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 HOOK3Q86VS8 718 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 SPATA24Q86W54 205 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 RIOX2Q8IUF8 465 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 NIM1KQ8IY84 436 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 SYCP3Q8IZU3 236 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 CISD2Q8N5K1 135 aaKnown RBP5.92□□□□□ -1.46
CD44-236ENST00000533222 PAF1Q8N7H5 531 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 NKAIN3Q8N8D7 197 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 TOR1AIP2Q8NFQ8 470 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 SGCDQ92629 289 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 ARHGEF2Q92974 986 aaKnown RBP5.92□□□□□ -1.46
CD44-236ENST00000533222 MED30Q96HR3 178 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 MAGEB10Q96LZ2 347 aaPredicted RBP5.92□□□□□ -1.46
CD44-236ENST00000533222 TBATAQ96M53 351 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 C16orf45Q96MC5 204 aaPredicted RBP5.92□□□□□ -1.46
CD44-236ENST00000533222 PSKH2Q96QS6 385 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 HAPLN3Q96S86 360 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 HGH1Q9BTY7 390 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 NAA15Q9BXJ9 866 aaKnown RBP5.92□□□□□ -1.46
CD44-236ENST00000533222 NAT10Q9H0A0 1025 aaKnown RBP5.92□□□□□ -1.46
CD44-236ENST00000533222 OSBPL5Q9H0X9 879 aaPredicted RBP5.92□□□□□ -1.46
CD44-236ENST00000533222 SEPT11Q9NVA2 429 aaKnown RBP5.92□□□□□ -1.46
CD44-236ENST00000533222 SDAD1Q9NVU7 687 aaKnown RBP eCLIP5.92□□□□□ -1.46
CD44-236ENST00000533222 AATFQ9NY61 560 aaKnown RBP eCLIP5.92□□□□□ -1.46
CD44-236ENST00000533222 RTEL1Q9NZ71 1219 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 CBLCQ9ULV8 474 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 CAPN7Q9Y6W3 813 aa5.92□□□□□ -1.46
CD44-236ENST00000533222 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms